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Fusion gene ID: 26453 |
FusionGeneSummary for PDGFC_G3BP2 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: PDGFC_G3BP2 | Fusion gene ID: 26453 | Hgene | Tgene | Gene symbol | PDGFC | G3BP2 | Gene ID | 56034 | 9908 |
| Gene name | platelet derived growth factor C | G3BP stress granule assembly factor 2 | |
| Synonyms | FALLOTEIN|SCDGF | - | |
| Cytomap | 4q32.1 | 4q21.1 | |
| Type of gene | protein-coding | protein-coding | |
| Description | platelet-derived growth factor CPDGF-CVEGF-Esecretory growth factor-like proteinspinal cord-derived growth factor | ras GTPase-activating protein-binding protein 2G3BP-2GAP SH3 domain-binding protein 2GTPase activating protein (SH3 domain) binding protein 2Ras-GTPase activating protein SH3 domain-binding protein 2 | |
| Modification date | 20180523 | 20180523 | |
| UniProtAcc | Q9NRA1 | Q9UN86 | |
| Ensembl transtripts involved in fusion gene | ENST00000502773, ENST00000541126, ENST00000422544, ENST00000504672, ENST00000542208, | ENST00000395719, ENST00000359707, ENST00000357854, ENST00000502654, | |
| Fusion gene scores | * DoF score | 1 X 1 X 1=1 | 3 X 2 X 2=12 |
| # samples | 1 | 3 | |
| ** MAII score | log2(1/1*10)=3.32192809488736 | log2(3/12*10)=1.32192809488736 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
| Context | PubMed: PDGFC [Title/Abstract] AND G3BP2 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | PDGFC | GO:0008284 | positive regulation of cell proliferation | 10806482 |
| Hgene | PDGFC | GO:0048008 | platelet-derived growth factor receptor signaling pathway | 10806482 |
| Hgene | PDGFC | GO:0048146 | positive regulation of fibroblast proliferation | 10806482 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | LUAD | TCGA-86-A4D0-01A | PDGFC | chr4 | 157891938 | - | G3BP2 | chr4 | 76587233 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 5CDS-5UTR | ENST00000502773 | ENST00000395719 | PDGFC | chr4 | 157891938 | - | G3BP2 | chr4 | 76587233 | - |
| 5CDS-5UTR | ENST00000502773 | ENST00000359707 | PDGFC | chr4 | 157891938 | - | G3BP2 | chr4 | 76587233 | - |
| 5CDS-5UTR | ENST00000502773 | ENST00000357854 | PDGFC | chr4 | 157891938 | - | G3BP2 | chr4 | 76587233 | - |
| 5CDS-intron | ENST00000502773 | ENST00000502654 | PDGFC | chr4 | 157891938 | - | G3BP2 | chr4 | 76587233 | - |
| 5UTR-5UTR | ENST00000541126 | ENST00000395719 | PDGFC | chr4 | 157891938 | - | G3BP2 | chr4 | 76587233 | - |
| 5UTR-5UTR | ENST00000541126 | ENST00000359707 | PDGFC | chr4 | 157891938 | - | G3BP2 | chr4 | 76587233 | - |
| 5UTR-5UTR | ENST00000541126 | ENST00000357854 | PDGFC | chr4 | 157891938 | - | G3BP2 | chr4 | 76587233 | - |
| 5UTR-intron | ENST00000541126 | ENST00000502654 | PDGFC | chr4 | 157891938 | - | G3BP2 | chr4 | 76587233 | - |
| 5CDS-5UTR | ENST00000422544 | ENST00000395719 | PDGFC | chr4 | 157891938 | - | G3BP2 | chr4 | 76587233 | - |
| 5CDS-5UTR | ENST00000422544 | ENST00000359707 | PDGFC | chr4 | 157891938 | - | G3BP2 | chr4 | 76587233 | - |
| 5CDS-5UTR | ENST00000422544 | ENST00000357854 | PDGFC | chr4 | 157891938 | - | G3BP2 | chr4 | 76587233 | - |
| 5CDS-intron | ENST00000422544 | ENST00000502654 | PDGFC | chr4 | 157891938 | - | G3BP2 | chr4 | 76587233 | - |
| intron-5UTR | ENST00000504672 | ENST00000395719 | PDGFC | chr4 | 157891938 | - | G3BP2 | chr4 | 76587233 | - |
| intron-5UTR | ENST00000504672 | ENST00000359707 | PDGFC | chr4 | 157891938 | - | G3BP2 | chr4 | 76587233 | - |
| intron-5UTR | ENST00000504672 | ENST00000357854 | PDGFC | chr4 | 157891938 | - | G3BP2 | chr4 | 76587233 | - |
| intron-intron | ENST00000504672 | ENST00000502654 | PDGFC | chr4 | 157891938 | - | G3BP2 | chr4 | 76587233 | - |
| intron-5UTR | ENST00000542208 | ENST00000395719 | PDGFC | chr4 | 157891938 | - | G3BP2 | chr4 | 76587233 | - |
| intron-5UTR | ENST00000542208 | ENST00000359707 | PDGFC | chr4 | 157891938 | - | G3BP2 | chr4 | 76587233 | - |
| intron-5UTR | ENST00000542208 | ENST00000357854 | PDGFC | chr4 | 157891938 | - | G3BP2 | chr4 | 76587233 | - |
| intron-intron | ENST00000542208 | ENST00000502654 | PDGFC | chr4 | 157891938 | - | G3BP2 | chr4 | 76587233 | - |
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FusionProtFeatures for PDGFC_G3BP2 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| PDGFC | G3BP2 |
| Growth factor that plays an essential role in theregulation of embryonic development, cell proliferation, cellmigration, survival and chemotaxis. Potent mitogen andchemoattractant for cells of mesenchymal origin. Required fornormal skeleton formation during embryonic development, especiallyfor normal development of the craniofacial skeleton and for normaldevelopment of the palate. Required for normal skin morphogenesisduring embryonic development. Plays an important role in woundhealing, where it appears to be involved in three stages:inflammation, proliferation and remodeling. Plays an importantrole in angiogenesis and blood vessel development. Involved infibrotic processes, in which transformation of interstitialfibroblasts into myofibroblasts plus collagen deposition occurs.The CUB domain has mitogenic activity in coronary artery smoothmuscle cells, suggesting a role beyond the maintenance of thelatency of the PDGF domain. In the nucleus, PDGFC seems to haveadditional function. {ECO:0000269|PubMed:10806482,ECO:0000269|PubMed:10858496, ECO:0000269|PubMed:11297552,ECO:0000269|PubMed:11854040, ECO:0000269|PubMed:12032822,ECO:0000269|PubMed:15061151, ECO:0000269|PubMed:15372073,ECO:0000269|PubMed:15389578, ECO:0000269|PubMed:15728360,ECO:0000269|PubMed:15911618, ECO:0000269|PubMed:16439802,ECO:0000269|PubMed:18055825}. | Probable scaffold protein that may be involved in mRNAtransport. {ECO:0000305}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for PDGFC_G3BP2 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for PDGFC_G3BP2 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| PDGFC | PDGFRA, PLAT, PLAU, ST14, BAG3, CREB3 | G3BP2 | STK24, NFKBIA, DDX10, RNH1, RPL3L, NUP214, USP10, FARS2, ASCC3, ATXN2L, NUP62, C3orf17, GNL2, UIMC1, UBAP2, DDX24, NUFIP2, RPF2, WDR36, RPL22L1, ING4, TERF2, TP53, MDM2, UBC, PTEN, ELAVL1, ARRB2, CUL3, CDK2, CUL1, COPS5, CAND1, ESR1, CA9, VCP, TARDBP, PIN1, DDX6, FXR2, IVNS1ABP, SUZ12, RNF2, BMI1, G3BP1, POM121, NUP153, NUP88, HNRNPA1, ADSL, IFI30, IGF2BP3, PABPC1, PABPC4, PRPF8, YARS, SFN, NTRK1, RPL10, NF2, SNW1, WWP2, TRIM25, KLHDC3, CYLD, LASP1, RPS6, CAPRIN1 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for PDGFC_G3BP2 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for PDGFC_G3BP2 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | PDGFC | C0025500 | Mesothelioma | 1 | CTD_human |
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