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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 26380

FusionGeneSummary for PDE3A_CENPF

check button Fusion gene summary
Fusion gene informationFusion gene name: PDE3A_CENPF
Fusion gene ID: 26380
HgeneTgene
Gene symbol

PDE3A

CENPF

Gene ID

5139

1063

Gene namephosphodiesterase 3Acentromere protein F
SynonymsCGI-PDE|CGI-PDE A|CGI-PDE-A|HTNBCENF|CILD31|PRO1779|STROMS|hcp-1
Cytomap

12p12.2

1q41

Type of geneprotein-codingprotein-coding
DescriptioncGMP-inhibited 3',5'-cyclic phosphodiesterase AcAMP phosphodiesterase, myocardial cGMP-inhibitedcyclic GMP-inhibited phosphodiesterase Aphosphodiesterase 3A, cGMP-inhibitedcentromere protein FAH antigenCENP-F kinetochore proteincell-cycle-dependent 350K nuclear proteincentromere protein F, 350/400kDakinetochore protein CENPFmitosin
Modification date2018051920180522
UniProtAcc

Q14432

P49454

Ensembl transtripts involved in fusion geneENST00000359062, ENST00000544307, 
ENST00000366955, ENST00000467765, 
Fusion gene scores* DoF score5 X 4 X 3=606 X 6 X 2=72
# samples 56
** MAII scorelog2(5/60*10)=-0.263034405833794
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(6/72*10)=-0.263034405833794
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: PDE3A [Title/Abstract] AND CENPF [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgenePDE3A

GO:0006198

cAMP catabolic process

17704206

HgenePDE3A

GO:0071321

cellular response to cGMP

17704206

TgeneCENPF

GO:0015031

protein transport

12974617

TgeneCENPF

GO:0045892

negative regulation of transcription, DNA-templated

15677469

TgeneCENPF

GO:0051310

metaphase plate congression

15870278


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS3.1AF118076PDE3Achr12

20597267

-CENPFchr1

214822023

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
intron-3CDSENST00000359062ENST00000366955PDE3Achr12

20597267

-CENPFchr1

214822023

+
intron-3CDSENST00000359062ENST00000467765PDE3Achr12

20597267

-CENPFchr1

214822023

+
intron-3CDSENST00000544307ENST00000366955PDE3Achr12

20597267

-CENPFchr1

214822023

+
intron-3CDSENST00000544307ENST00000467765PDE3Achr12

20597267

-CENPFchr1

214822023

+

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FusionProtFeatures for PDE3A_CENPF


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
PDE3A

Q14432

CENPF

P49454

Cyclic nucleotide phosphodiesterase with a dual-specificity for the second messengers cAMP and cGMP, which are keyregulators of many important physiological processes.{ECO:0000250|UniProtKB:Q9Z0X4}. Required for kinetochore function and chromosomesegregation in mitosis. Required for kinetochore localization ofdynein, LIS1, NDE1 and NDEL1. Regulates recycling of the plasmamembrane by acting as a link between recycling vesicles and themicrotubule network though its association with STX4 and SNAP25.Acts as a potential inhibitor of pocket protein-mediated cellularprocesses during development by regulating the activity of RBproteins during cell division and proliferation. May play aregulatory or permissive role in the normal embryoniccardiomyocyte cell cycle and in promoting continued mitosis intransformed, abnormally dividing neonatal cardiomyocytes.Interaction with RB directs embryonic stem cells toward a cardiaclineage. Involved in the regulation of DNA synthesis and hencecell cycle progression, via its C-terminus. Has a potential roleregulating skeletal myogenesis and in cell differentiation inembryogenesis. Involved in dendritic cell regulation of T-cellimmunity against chlamydia. {ECO:0000269|PubMed:12974617,ECO:0000269|PubMed:17600710, ECO:0000269|PubMed:7542657,ECO:0000269|PubMed:7651420}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for PDE3A_CENPF


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for PDE3A_CENPF


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for PDE3A_CENPF


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status
HgenePDE3AQ14432DB00235MilrinonecGMP-inhibited 3',5'-cyclic phosphodiesterase Asmall moleculeapproved
HgenePDE3AQ14432DB00261AnagrelidecGMP-inhibited 3',5'-cyclic phosphodiesterase Asmall moleculeapproved
HgenePDE3AQ14432DB00277TheophyllinecGMP-inhibited 3',5'-cyclic phosphodiesterase Asmall moleculeapproved
HgenePDE3AQ14432DB01223AminophyllinecGMP-inhibited 3',5'-cyclic phosphodiesterase Asmall moleculeapproved
HgenePDE3AQ14432DB01303OxtriphyllinecGMP-inhibited 3',5'-cyclic phosphodiesterase Asmall moleculeapproved
HgenePDE3AQ14432DB01427AmrinonecGMP-inhibited 3',5'-cyclic phosphodiesterase Asmall moleculeapproved
HgenePDE3AQ14432DB08811TofisopamcGMP-inhibited 3',5'-cyclic phosphodiesterase Asmall moleculeapproved
HgenePDE3AQ14432DB00922LevosimendancGMP-inhibited 3',5'-cyclic phosphodiesterase Asmall moleculeapproved|investigational
HgenePDE3AQ14432DB01166CilostazolcGMP-inhibited 3',5'-cyclic phosphodiesterase Asmall moleculeapproved|investigational
HgenePDE3AQ14432DB04880EnoximonecGMP-inhibited 3',5'-cyclic phosphodiesterase Asmall moleculeapproved|investigational
HgenePDE3AQ14432DB05266IbudilastcGMP-inhibited 3',5'-cyclic phosphodiesterase Asmall moleculeapproved|investigational

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RelatedDiseases for PDE3A_CENPF


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgenePDE3AC0027051Myocardial Infarction1CTD_human
HgenePDE3AC0040053Thrombosis1CTD_human
HgenePDE3AC1862170Brachydactyly with hypertension1CTD_human;ORPHANET;UNIPROT
TgeneCENPFC1458155Mammary Neoplasms1CTD_human