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Fusion gene ID: 26346 |
FusionGeneSummary for PDCD4_CHD1L |
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Fusion gene information | Fusion gene name: PDCD4_CHD1L | Fusion gene ID: 26346 | Hgene | Tgene | Gene symbol | PDCD4 | CHD1L | Gene ID | 27250 | 9557 |
Gene name | programmed cell death 4 | chromodomain helicase DNA binding protein 1 like | |
Synonyms | H731 | ALC1|CHDL | |
Cytomap | 10q25.2 | 1q21.1 | |
Type of gene | protein-coding | protein-coding | |
Description | programmed cell death protein 4neoplastic transformation inhibitor proteinnuclear antigen H731programmed cell death 4 (neoplastic transformation inhibitor)protein 197/15a | chromodomain-helicase-DNA-binding protein 1-likeamplified in liver cancer 1amplified in liver cancer protein 1 | |
Modification date | 20180527 | 20180522 | |
UniProtAcc | Q53EL6 | Q86WJ1 | |
Ensembl transtripts involved in fusion gene | ENST00000280154, ENST00000393104, ENST00000481353, | ENST00000431239, ENST00000369259, ENST00000369258, ENST00000467213, ENST00000361293, | |
Fusion gene scores | * DoF score | 5 X 5 X 1=25 | 5 X 4 X 4=80 |
# samples | 5 | 5 | |
** MAII score | log2(5/25*10)=1 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(5/80*10)=-0.678071905112638 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: PDCD4 [Title/Abstract] AND CHD1L [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation | Oncogene involved fusion gene, in-frame and retained their domain. Tumor suppressor gene involved fusion gene, in-frame but not retained their domain. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | PDCD4 | GO:0007569 | cell aging | 12054647 |
Hgene | PDCD4 | GO:0030509 | BMP signaling pathway | 18548003 |
Hgene | PDCD4 | GO:0045892 | negative regulation of transcription, DNA-templated | 16357133 |
Hgene | PDCD4 | GO:1905064 | negative regulation of vascular smooth muscle cell differentiation | 18548003 |
Tgene | CHD1L | GO:0006338 | chromatin remodeling | 19661379 |
Tgene | CHD1L | GO:0006974 | cellular response to DNA damage stimulus | 19661379 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | DA689020 | PDCD4 | chr10 | 112635830 | + | CHD1L | chr1 | 146747014 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000280154 | ENST00000431239 | PDCD4 | chr10 | 112635830 | + | CHD1L | chr1 | 146747014 | + |
In-frame | ENST00000280154 | ENST00000369259 | PDCD4 | chr10 | 112635830 | + | CHD1L | chr1 | 146747014 | + |
In-frame | ENST00000280154 | ENST00000369258 | PDCD4 | chr10 | 112635830 | + | CHD1L | chr1 | 146747014 | + |
5CDS-3UTR | ENST00000280154 | ENST00000467213 | PDCD4 | chr10 | 112635830 | + | CHD1L | chr1 | 146747014 | + |
5CDS-3UTR | ENST00000280154 | ENST00000361293 | PDCD4 | chr10 | 112635830 | + | CHD1L | chr1 | 146747014 | + |
5UTR-3CDS | ENST00000393104 | ENST00000431239 | PDCD4 | chr10 | 112635830 | + | CHD1L | chr1 | 146747014 | + |
5UTR-3CDS | ENST00000393104 | ENST00000369259 | PDCD4 | chr10 | 112635830 | + | CHD1L | chr1 | 146747014 | + |
5UTR-3CDS | ENST00000393104 | ENST00000369258 | PDCD4 | chr10 | 112635830 | + | CHD1L | chr1 | 146747014 | + |
5UTR-3UTR | ENST00000393104 | ENST00000467213 | PDCD4 | chr10 | 112635830 | + | CHD1L | chr1 | 146747014 | + |
5UTR-3UTR | ENST00000393104 | ENST00000361293 | PDCD4 | chr10 | 112635830 | + | CHD1L | chr1 | 146747014 | + |
intron-3CDS | ENST00000481353 | ENST00000431239 | PDCD4 | chr10 | 112635830 | + | CHD1L | chr1 | 146747014 | + |
intron-3CDS | ENST00000481353 | ENST00000369259 | PDCD4 | chr10 | 112635830 | + | CHD1L | chr1 | 146747014 | + |
intron-3CDS | ENST00000481353 | ENST00000369258 | PDCD4 | chr10 | 112635830 | + | CHD1L | chr1 | 146747014 | + |
intron-3UTR | ENST00000481353 | ENST00000467213 | PDCD4 | chr10 | 112635830 | + | CHD1L | chr1 | 146747014 | + |
intron-3UTR | ENST00000481353 | ENST00000361293 | PDCD4 | chr10 | 112635830 | + | CHD1L | chr1 | 146747014 | + |
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FusionProtFeatures for PDCD4_CHD1L |
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Hgene | Tgene |
PDCD4 | CHD1L |
Inhibits translation initiation and cap-dependenttranslation. May excert its function by hindering the interactionbetween EIF4A1 and EIF4G. Inhibits the helicase activity of EIF4A.Modulates the activation of JUN kinase. Down-regulates theexpression of MAP4K1, thus inhibiting events important in drivinginvasion, namely, MAPK85 activation and consequent JUN-dependenttranscription. May play a role in apoptosis. Tumor suppressor.Inhibits tumor promoter-induced neoplastic transformation. BindsRNA (By similarity). {ECO:0000250, ECO:0000269|PubMed:16357133,ECO:0000269|PubMed:16449643, ECO:0000269|PubMed:17053147,ECO:0000269|PubMed:18296639, ECO:0000269|PubMed:19153607,ECO:0000269|PubMed:19204291}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | >CHD1L | chr10:112635830 | chr1:146747014 | ENST00000369258 | + | 11 | 23 | 638_675 | 423 | 898 | Coiled coil | Ontology_term=ECO:0000255 |
Tgene | >CHD1L | chr10:112635830 | chr1:146747014 | ENST00000369259 | + | 5 | 17 | 638_675 | 219 | 694 | Coiled coil | Ontology_term=ECO:0000255 |
Tgene | >CHD1L | chr10:112635830 | chr1:146747014 | ENST00000431239 | + | 8 | 20 | 638_675 | 329 | 804 | Coiled coil | Ontology_term=ECO:0000255 |
Tgene | >CHD1L | chr10:112635830 | chr1:146747014 | ENST00000369258 | + | 11 | 23 | 704_897 | 423 | 898 | Domain | Macro |
Tgene | >CHD1L | chr10:112635830 | chr1:146747014 | ENST00000369259 | + | 5 | 17 | 351_513 | 219 | 694 | Domain | Helicase C-terminal |
Tgene | >CHD1L | chr10:112635830 | chr1:146747014 | ENST00000369259 | + | 5 | 17 | 704_897 | 219 | 694 | Domain | Macro |
Tgene | >CHD1L | chr10:112635830 | chr1:146747014 | ENST00000431239 | + | 8 | 20 | 351_513 | 329 | 804 | Domain | Helicase C-terminal |
Tgene | >CHD1L | chr10:112635830 | chr1:146747014 | ENST00000431239 | + | 8 | 20 | 704_897 | 329 | 804 | Domain | Macro |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >PDCD4 | chr10:112635830 | chr1:146747014 | ENST00000280154 | + | 2 | 12 | 163_284 | 14 | 470 | Domain | MI 1 |
Hgene | >PDCD4 | chr10:112635830 | chr1:146747014 | ENST00000280154 | + | 2 | 12 | 326_449 | 14 | 470 | Domain | MI 2 |
Hgene | >PDCD4 | chr10:112635830 | chr1:146747014 | ENST00000393104 | + | 2 | 13 | 163_284 | -25 | 459 | Domain | MI 1 |
Hgene | >PDCD4 | chr10:112635830 | chr1:146747014 | ENST00000393104 | + | 2 | 13 | 326_449 | -25 | 459 | Domain | MI 2 |
Hgene | >PDCD4 | chr10:112635830 | chr1:146747014 | ENST00000280154 | + | 2 | 12 | 241_250 | 14 | 470 | Motif | Nuclear localization signal |
Hgene | >PDCD4 | chr10:112635830 | chr1:146747014 | ENST00000280154 | + | 2 | 12 | 58_64 | 14 | 470 | Motif | Nuclear localization signal |
Hgene | >PDCD4 | chr10:112635830 | chr1:146747014 | ENST00000280154 | + | 2 | 12 | 70_76 | 14 | 470 | Motif | Note=Phosphodegron |
Hgene | >PDCD4 | chr10:112635830 | chr1:146747014 | ENST00000393104 | + | 2 | 13 | 241_250 | -25 | 459 | Motif | Nuclear localization signal |
Hgene | >PDCD4 | chr10:112635830 | chr1:146747014 | ENST00000393104 | + | 2 | 13 | 58_64 | -25 | 459 | Motif | Nuclear localization signal |
Hgene | >PDCD4 | chr10:112635830 | chr1:146747014 | ENST00000393104 | + | 2 | 13 | 70_76 | -25 | 459 | Motif | Note=Phosphodegron |
Tgene | CHD1L | chr10:112635830 | chr1:146747014 | ENST00000369258 | + | 11 | 23 | 351_513 | 423 | 898 | Domain | Helicase C-terminal |
Tgene | CHD1L | chr10:112635830 | chr1:146747014 | ENST00000369258 | + | 11 | 23 | 58_223 | 423 | 898 | Domain | Helicase ATP-binding |
Tgene | CHD1L | chr10:112635830 | chr1:146747014 | ENST00000369259 | + | 5 | 17 | 58_223 | 219 | 694 | Domain | Helicase ATP-binding |
Tgene | CHD1L | chr10:112635830 | chr1:146747014 | ENST00000431239 | + | 8 | 20 | 58_223 | 329 | 804 | Domain | Helicase ATP-binding |
Tgene | CHD1L | chr10:112635830 | chr1:146747014 | ENST00000369258 | + | 11 | 23 | 174_177 | 423 | 898 | Motif | Note=DEAH box |
Tgene | CHD1L | chr10:112635830 | chr1:146747014 | ENST00000369259 | + | 5 | 17 | 174_177 | 219 | 694 | Motif | Note=DEAH box |
Tgene | CHD1L | chr10:112635830 | chr1:146747014 | ENST00000431239 | + | 8 | 20 | 174_177 | 329 | 804 | Motif | Note=DEAH box |
Tgene | CHD1L | chr10:112635830 | chr1:146747014 | ENST00000369258 | + | 11 | 23 | 71_78 | 423 | 898 | Nucleotide binding | ATP |
Tgene | CHD1L | chr10:112635830 | chr1:146747014 | ENST00000369259 | + | 5 | 17 | 71_78 | 219 | 694 | Nucleotide binding | ATP |
Tgene | CHD1L | chr10:112635830 | chr1:146747014 | ENST00000431239 | + | 8 | 20 | 71_78 | 329 | 804 | Nucleotide binding | ATP |
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FusionGeneSequence for PDCD4_CHD1L |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_PDCD4_ENST00000280154_chr10_112635830_+_CHD1L_ENST00000431239_chr1_146747014_+_489aa MDVENEQILNVNPAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEGGHF TLGAQKPAADADLQLSEILKFGLDKLLASEGSTMDEIDLESILGETKDGQWVSDALPAAEGGSRDQEEGKNHMYLFEGKDYSKEPSKEDR KSFEQLVNLQKTLLEKASQEGRSLRNKGSVLIPGLVEGSTKRKRVLSPEELEDRQKKRQEAAAKRRRLIEEKKRQKEEAEHKKKMAWWES NNYQSFCLPSEESEPEDLENGEESSAELDYQDPDATSLKYVSGDVTHPQAGAEDALIVHCVDDSGHWGRGGLFTALEKRSAEPRKIYELA GKMKDLSLGGVLLFPVDDKESRNKGQDLLALIVAQHRDRSNVLSGIKMAALEEGLKKIFLAAKKKKASVHLPRIGHATKGFNWYGTERLI >In-frame_PDCD4_ENST00000280154_chr10_112635830_+_CHD1L_ENST00000369259_chr1_146747014_+_489aa MDVENEQILNVNPAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEGGHF TLGAQKPAADADLQLSEILKFGLDKLLASEGSTMDEIDLESILGETKDGQWVSDALPAAEGGSRDQEEGKNHMYLFEGKDYSKEPSKEDR KSFEQLVNLQKTLLEKASQEGRSLRNKGSVLIPGLVEGSTKRKRVLSPEELEDRQKKRQEAAAKRRRLIEEKKRQKEEAEHKKKMAWWES NNYQSFCLPSEESEPEDLENGEESSAELDYQDPDATSLKYVSGDVTHPQAGAEDALIVHCVDDSGHWGRGGLFTALEKRSAEPRKIYELA GKMKDLSLGGVLLFPVDDKESRNKGQDLLALIVAQHRDRSNVLSGIKMAALEEGLKKIFLAAKKKKASVHLPRIGHATKGFNWYGTERLI >In-frame_PDCD4_ENST00000280154_chr10_112635830_+_CHD1L_ENST00000369258_chr1_146747014_+_489aa MDVENEQILNVNPAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEGGHF TLGAQKPAADADLQLSEILKFGLDKLLASEGSTMDEIDLESILGETKDGQWVSDALPAAEGGSRDQEEGKNHMYLFEGKDYSKEPSKEDR KSFEQLVNLQKTLLEKASQEGRSLRNKGSVLIPGLVEGSTKRKRVLSPEELEDRQKKRQEAAAKRRRLIEEKKRQKEEAEHKKKMAWWES NNYQSFCLPSEESEPEDLENGEESSAELDYQDPDATSLKYVSGDVTHPQAGAEDALIVHCVDDSGHWGRGGLFTALEKRSAEPRKIYELA GKMKDLSLGGVLLFPVDDKESRNKGQDLLALIVAQHRDRSNVLSGIKMAALEEGLKKIFLAAKKKKASVHLPRIGHATKGFNWYGTERLI |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_PDCD4_ENST00000280154_chr10_112635830_+_CHD1L_ENST00000431239_chr1_146747014_+_1467nt ATGGATGTAGAAAATGAGCAGATACTGAATGTAAACCCTGCAGGTGGAGTTGGCATGAACTTAACAGCAGCAGATACTGTGATTTTTGTT GACAGTGACTTTAATCCTCAGAATGACTTGCAAGCAGCTGCCAGGGCTCATCGCATTGGCCAAAACAAGTCTGTTAAAGTTATTCGGCTG ATTGGTCGAGACACTGTGGAAGAAATAGTCTATAGGAAAGCAGCCTCCAAACTGCAGCTCACCAACATGATCATAGAAGGAGGCCATTTT ACTCTGGGAGCCCAGAAACCCGCTGCCGATGCTGACCTCCAGTTGAGTGAGATACTCAAATTTGGTTTGGATAAACTGCTGGCCTCTGAG GGGAGCACCATGGATGAAATAGACCTGGAGTCCATACTGGGAGAAACAAAAGATGGCCAGTGGGTCTCTGATGCCTTGCCTGCAGCAGAA GGAGGGAGCAGAGATCAAGAGGAAGGAAAAAATCATATGTACTTATTTGAAGGTAAAGATTATTCTAAAGAGCCCAGTAAGGAAGACAGA AAATCATTTGAACAACTGGTAAACCTTCAGAAAACCCTTTTGGAGAAAGCTAGTCAAGAGGGCCGATCACTCCGAAATAAAGGCAGTGTT CTCATCCCAGGCCTTGTGGAGGGATCTACCAAAAGGAAGCGGGTTCTGAGTCCAGAAGAGCTGGAGGACAGACAGAAGAAAAGACAAGAA GCAGCTGCCAAGAGAAGGAGACTCATAGAGGAGAAGAAGAGGCAAAAGGAAGAGGCTGAACATAAGAAAAAGATGGCCTGGTGGGAATCC AACAATTACCAGTCCTTCTGCCTGCCCTCTGAGGAGAGCGAGCCAGAGGACCTTGAGAATGGGGAAGAGAGCTCTGCTGAGCTGGATTAC CAAGACCCAGATGCTACTTCCCTCAAGTACGTTAGTGGTGATGTCACCCACCCTCAGGCTGGGGCCGAGGATGCTCTCATTGTGCACTGC GTAGATGACTCTGGCCACTGGGGCAGAGGTGGTTTATTTACAGCTCTGGAAAAGCGATCCGCTGAGCCAAGAAAAATATATGAGCTGGCT GGGAAAATGAAAGACCTGAGTTTGGGAGGTGTCCTTTTATTTCCTGTTGATGATAAAGAATCAAGAAACAAAGGGCAAGATTTGTTGGCC TTGATTGTGGCTCAGCATCGTGATCGTTCCAATGTCCTGTCTGGCATTAAGATGGCAGCCCTAGAAGAGGGCCTGAAGAAGATATTTTTA GCAGCAAAAAAGAAGAAAGCAAGTGTTCATCTTCCACGTATTGGACATGCCACGAAAGGTTTTAACTGGTATGGTACTGAGCGACTTATT CGGAAACATCTGGCTGCAAGAGGCATCCCAACTTACATATATTATTTTCCTAGAAGCAAGTCTGCTGTCCTTCATGCACAGTCTTCATCT >In-frame_PDCD4_ENST00000280154_chr10_112635830_+_CHD1L_ENST00000369259_chr1_146747014_+_1467nt ATGGATGTAGAAAATGAGCAGATACTGAATGTAAACCCTGCAGGTGGAGTTGGCATGAACTTAACAGCAGCAGATACTGTGATTTTTGTT GACAGTGACTTTAATCCTCAGAATGACTTGCAAGCAGCTGCCAGGGCTCATCGCATTGGCCAAAACAAGTCTGTTAAAGTTATTCGGCTG ATTGGTCGAGACACTGTGGAAGAAATAGTCTATAGGAAAGCAGCCTCCAAACTGCAGCTCACCAACATGATCATAGAAGGAGGCCATTTT ACTCTGGGAGCCCAGAAACCCGCTGCCGATGCTGACCTCCAGTTGAGTGAGATACTCAAATTTGGTTTGGATAAACTGCTGGCCTCTGAG GGGAGCACCATGGATGAAATAGACCTGGAGTCCATACTGGGAGAAACAAAAGATGGCCAGTGGGTCTCTGATGCCTTGCCTGCAGCAGAA GGAGGGAGCAGAGATCAAGAGGAAGGAAAAAATCATATGTACTTATTTGAAGGTAAAGATTATTCTAAAGAGCCCAGTAAGGAAGACAGA AAATCATTTGAACAACTGGTAAACCTTCAGAAAACCCTTTTGGAGAAAGCTAGTCAAGAGGGCCGATCACTCCGAAATAAAGGCAGTGTT CTCATCCCAGGCCTTGTGGAGGGATCTACCAAAAGGAAGCGGGTTCTGAGTCCAGAAGAGCTGGAGGACAGACAGAAGAAAAGACAAGAA GCAGCTGCCAAGAGAAGGAGACTCATAGAGGAGAAGAAGAGGCAAAAGGAAGAGGCTGAACATAAGAAAAAGATGGCCTGGTGGGAATCC AACAATTACCAGTCCTTCTGCCTGCCCTCTGAGGAGAGCGAGCCAGAGGACCTTGAGAATGGGGAAGAGAGCTCTGCTGAGCTGGATTAC CAAGACCCAGATGCTACTTCCCTCAAGTACGTTAGTGGTGATGTCACCCACCCTCAGGCTGGGGCCGAGGATGCTCTCATTGTGCACTGC GTAGATGACTCTGGCCACTGGGGCAGAGGTGGTTTATTTACAGCTCTGGAAAAGCGATCCGCTGAGCCAAGAAAAATATATGAGCTGGCT GGGAAAATGAAAGACCTGAGTTTGGGAGGTGTCCTTTTATTTCCTGTTGATGATAAAGAATCAAGAAACAAAGGGCAAGATTTGTTGGCC TTGATTGTGGCTCAGCATCGTGATCGTTCCAATGTCCTGTCTGGCATTAAGATGGCAGCCCTAGAAGAGGGCCTGAAGAAGATATTTTTA GCAGCAAAAAAGAAGAAAGCAAGTGTTCATCTTCCACGTATTGGACATGCCACGAAAGGTTTTAACTGGTATGGTACTGAGCGACTTATT CGGAAACATCTGGCTGCAAGAGGCATCCCAACTTACATATATTATTTTCCTAGAAGCAAGTCTGCTGTCCTTCATGCACAGTCTTCATCT >In-frame_PDCD4_ENST00000280154_chr10_112635830_+_CHD1L_ENST00000369258_chr1_146747014_+_1467nt ATGGATGTAGAAAATGAGCAGATACTGAATGTAAACCCTGCAGGTGGAGTTGGCATGAACTTAACAGCAGCAGATACTGTGATTTTTGTT GACAGTGACTTTAATCCTCAGAATGACTTGCAAGCAGCTGCCAGGGCTCATCGCATTGGCCAAAACAAGTCTGTTAAAGTTATTCGGCTG ATTGGTCGAGACACTGTGGAAGAAATAGTCTATAGGAAAGCAGCCTCCAAACTGCAGCTCACCAACATGATCATAGAAGGAGGCCATTTT ACTCTGGGAGCCCAGAAACCCGCTGCCGATGCTGACCTCCAGTTGAGTGAGATACTCAAATTTGGTTTGGATAAACTGCTGGCCTCTGAG GGGAGCACCATGGATGAAATAGACCTGGAGTCCATACTGGGAGAAACAAAAGATGGCCAGTGGGTCTCTGATGCCTTGCCTGCAGCAGAA GGAGGGAGCAGAGATCAAGAGGAAGGAAAAAATCATATGTACTTATTTGAAGGTAAAGATTATTCTAAAGAGCCCAGTAAGGAAGACAGA AAATCATTTGAACAACTGGTAAACCTTCAGAAAACCCTTTTGGAGAAAGCTAGTCAAGAGGGCCGATCACTCCGAAATAAAGGCAGTGTT CTCATCCCAGGCCTTGTGGAGGGATCTACCAAAAGGAAGCGGGTTCTGAGTCCAGAAGAGCTGGAGGACAGACAGAAGAAAAGACAAGAA GCAGCTGCCAAGAGAAGGAGACTCATAGAGGAGAAGAAGAGGCAAAAGGAAGAGGCTGAACATAAGAAAAAGATGGCCTGGTGGGAATCC AACAATTACCAGTCCTTCTGCCTGCCCTCTGAGGAGAGCGAGCCAGAGGACCTTGAGAATGGGGAAGAGAGCTCTGCTGAGCTGGATTAC CAAGACCCAGATGCTACTTCCCTCAAGTACGTTAGTGGTGATGTCACCCACCCTCAGGCTGGGGCCGAGGATGCTCTCATTGTGCACTGC GTAGATGACTCTGGCCACTGGGGCAGAGGTGGTTTATTTACAGCTCTGGAAAAGCGATCCGCTGAGCCAAGAAAAATATATGAGCTGGCT GGGAAAATGAAAGACCTGAGTTTGGGAGGTGTCCTTTTATTTCCTGTTGATGATAAAGAATCAAGAAACAAAGGGCAAGATTTGTTGGCC TTGATTGTGGCTCAGCATCGTGATCGTTCCAATGTCCTGTCTGGCATTAAGATGGCAGCCCTAGAAGAGGGCCTGAAGAAGATATTTTTA GCAGCAAAAAAGAAGAAAGCAAGTGTTCATCTTCCACGTATTGGACATGCCACGAAAGGTTTTAACTGGTATGGTACTGAGCGACTTATT CGGAAACATCTGGCTGCAAGAGGCATCCCAACTTACATATATTATTTTCCTAGAAGCAAGTCTGCTGTCCTTCATGCACAGTCTTCATCT |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_PDCD4_ENST00000280154_chr10_112635830_+_CHD1L_ENST00000431239_chr1_146747014_+_1992nt AGCTCCGGCTCCGCCGCCACGATTGGCCAGCCGACCACCCGGCCTCGGCCAATAAGCGCCGCCCTCTCGCCCCCGTGTTACTGGGTAGAA GAAAACAAAAACAAACAGAGCGAGAAGGGCCAGAGACTCTCCGAGGCGGCGGCAGAGACAGAAGAGCGGGGTCGGGGCCGGCTGACCAGG AACCTGGGCGAGCAGCGGCGGGGGCCCGAGGGATTCTGAAGGAAGATTTCCATTAGGTAATTTGTTTAATCAGTGCAAGCGAAATTAAGG GAAAATGGATGTAGAAAATGAGCAGATACTGAATGTAAACCCTGCAGGTGGAGTTGGCATGAACTTAACAGCAGCAGATACTGTGATTTT TGTTGACAGTGACTTTAATCCTCAGAATGACTTGCAAGCAGCTGCCAGGGCTCATCGCATTGGCCAAAACAAGTCTGTTAAAGTTATTCG GCTGATTGGTCGAGACACTGTGGAAGAAATAGTCTATAGGAAAGCAGCCTCCAAACTGCAGCTCACCAACATGATCATAGAAGGAGGCCA TTTTACTCTGGGAGCCCAGAAACCCGCTGCCGATGCTGACCTCCAGTTGAGTGAGATACTCAAATTTGGTTTGGATAAACTGCTGGCCTC TGAGGGGAGCACCATGGATGAAATAGACCTGGAGTCCATACTGGGAGAAACAAAAGATGGCCAGTGGGTCTCTGATGCCTTGCCTGCAGC AGAAGGAGGGAGCAGAGATCAAGAGGAAGGAAAAAATCATATGTACTTATTTGAAGGTAAAGATTATTCTAAAGAGCCCAGTAAGGAAGA CAGAAAATCATTTGAACAACTGGTAAACCTTCAGAAAACCCTTTTGGAGAAAGCTAGTCAAGAGGGCCGATCACTCCGAAATAAAGGCAG TGTTCTCATCCCAGGCCTTGTGGAGGGATCTACCAAAAGGAAGCGGGTTCTGAGTCCAGAAGAGCTGGAGGACAGACAGAAGAAAAGACA AGAAGCAGCTGCCAAGAGAAGGAGACTCATAGAGGAGAAGAAGAGGCAAAAGGAAGAGGCTGAACATAAGAAAAAGATGGCCTGGTGGGA ATCCAACAATTACCAGTCCTTCTGCCTGCCCTCTGAGGAGAGCGAGCCAGAGGACCTTGAGAATGGGGAAGAGAGCTCTGCTGAGCTGGA TTACCAAGACCCAGATGCTACTTCCCTCAAGTACGTTAGTGGTGATGTCACCCACCCTCAGGCTGGGGCCGAGGATGCTCTCATTGTGCA CTGCGTAGATGACTCTGGCCACTGGGGCAGAGGTGGTTTATTTACAGCTCTGGAAAAGCGATCCGCTGAGCCAAGAAAAATATATGAGCT GGCTGGGAAAATGAAAGACCTGAGTTTGGGAGGTGTCCTTTTATTTCCTGTTGATGATAAAGAATCAAGAAACAAAGGGCAAGATTTGTT GGCCTTGATTGTGGCTCAGCATCGTGATCGTTCCAATGTCCTGTCTGGCATTAAGATGGCAGCCCTAGAAGAGGGCCTGAAGAAGATATT TTTAGCAGCAAAAAAGAAGAAAGCAAGTGTTCATCTTCCACGTATTGGACATGCCACGAAAGGTTTTAACTGGTATGGTACTGAGCGACT TATTCGGAAACATCTGGCTGCAAGAGGCATCCCAACTTACATATATTATTTTCCTAGAAGCAAGTCTGCTGTCCTTCATGCACAGTCTTC ATCTTCCTCCTCAAGACAGCTGGTGCCTTAAGAATTGGCCCAGCCTCAGATCCTGTCTTTAGCAACCAGCTAATATTTACCCAGAGGTAC TGCAATAGAGTATTTCAAAATGGAATCAGGATCTGGTGGGCCTCAGAAATTGTCTCTTTTCTGAGTTTCAATTTGGTTCTCCTGGATGTT TTGCTCTGTTTTGGTACCTGTAATATAGGGAAACACAACTTTTTTTGGGAAAGCCCTTTGACCCCAGCTTGCTAGTTGCATAATAATAAA >In-frame_PDCD4_ENST00000280154_chr10_112635830_+_CHD1L_ENST00000369259_chr1_146747014_+_1992nt AGCTCCGGCTCCGCCGCCACGATTGGCCAGCCGACCACCCGGCCTCGGCCAATAAGCGCCGCCCTCTCGCCCCCGTGTTACTGGGTAGAA GAAAACAAAAACAAACAGAGCGAGAAGGGCCAGAGACTCTCCGAGGCGGCGGCAGAGACAGAAGAGCGGGGTCGGGGCCGGCTGACCAGG AACCTGGGCGAGCAGCGGCGGGGGCCCGAGGGATTCTGAAGGAAGATTTCCATTAGGTAATTTGTTTAATCAGTGCAAGCGAAATTAAGG GAAAATGGATGTAGAAAATGAGCAGATACTGAATGTAAACCCTGCAGGTGGAGTTGGCATGAACTTAACAGCAGCAGATACTGTGATTTT TGTTGACAGTGACTTTAATCCTCAGAATGACTTGCAAGCAGCTGCCAGGGCTCATCGCATTGGCCAAAACAAGTCTGTTAAAGTTATTCG GCTGATTGGTCGAGACACTGTGGAAGAAATAGTCTATAGGAAAGCAGCCTCCAAACTGCAGCTCACCAACATGATCATAGAAGGAGGCCA TTTTACTCTGGGAGCCCAGAAACCCGCTGCCGATGCTGACCTCCAGTTGAGTGAGATACTCAAATTTGGTTTGGATAAACTGCTGGCCTC TGAGGGGAGCACCATGGATGAAATAGACCTGGAGTCCATACTGGGAGAAACAAAAGATGGCCAGTGGGTCTCTGATGCCTTGCCTGCAGC AGAAGGAGGGAGCAGAGATCAAGAGGAAGGAAAAAATCATATGTACTTATTTGAAGGTAAAGATTATTCTAAAGAGCCCAGTAAGGAAGA CAGAAAATCATTTGAACAACTGGTAAACCTTCAGAAAACCCTTTTGGAGAAAGCTAGTCAAGAGGGCCGATCACTCCGAAATAAAGGCAG TGTTCTCATCCCAGGCCTTGTGGAGGGATCTACCAAAAGGAAGCGGGTTCTGAGTCCAGAAGAGCTGGAGGACAGACAGAAGAAAAGACA AGAAGCAGCTGCCAAGAGAAGGAGACTCATAGAGGAGAAGAAGAGGCAAAAGGAAGAGGCTGAACATAAGAAAAAGATGGCCTGGTGGGA ATCCAACAATTACCAGTCCTTCTGCCTGCCCTCTGAGGAGAGCGAGCCAGAGGACCTTGAGAATGGGGAAGAGAGCTCTGCTGAGCTGGA TTACCAAGACCCAGATGCTACTTCCCTCAAGTACGTTAGTGGTGATGTCACCCACCCTCAGGCTGGGGCCGAGGATGCTCTCATTGTGCA CTGCGTAGATGACTCTGGCCACTGGGGCAGAGGTGGTTTATTTACAGCTCTGGAAAAGCGATCCGCTGAGCCAAGAAAAATATATGAGCT GGCTGGGAAAATGAAAGACCTGAGTTTGGGAGGTGTCCTTTTATTTCCTGTTGATGATAAAGAATCAAGAAACAAAGGGCAAGATTTGTT GGCCTTGATTGTGGCTCAGCATCGTGATCGTTCCAATGTCCTGTCTGGCATTAAGATGGCAGCCCTAGAAGAGGGCCTGAAGAAGATATT TTTAGCAGCAAAAAAGAAGAAAGCAAGTGTTCATCTTCCACGTATTGGACATGCCACGAAAGGTTTTAACTGGTATGGTACTGAGCGACT TATTCGGAAACATCTGGCTGCAAGAGGCATCCCAACTTACATATATTATTTTCCTAGAAGCAAGTCTGCTGTCCTTCATGCACAGTCTTC ATCTTCCTCCTCAAGACAGCTGGTGCCTTAAGAATTGGCCCAGCCTCAGATCCTGTCTTTAGCAACCAGCTAATATTTACCCAGAGGTAC TGCAATAGAGTATTTCAAAATGGAATCAGGATCTGGTGGGCCTCAGAAATTGTCTCTTTTCTGAGTTTCAATTTGGTTCTCCTGGATGTT TTGCTCTGTTTTGGTACCTGTAATATAGGGAAACACAACTTTTTTTGGGAAAGCCCTTTGACCCCAGCTTGCTAGTTGCATAATAATAAA >In-frame_PDCD4_ENST00000280154_chr10_112635830_+_CHD1L_ENST00000369258_chr1_146747014_+_1994nt AGCTCCGGCTCCGCCGCCACGATTGGCCAGCCGACCACCCGGCCTCGGCCAATAAGCGCCGCCCTCTCGCCCCCGTGTTACTGGGTAGAA GAAAACAAAAACAAACAGAGCGAGAAGGGCCAGAGACTCTCCGAGGCGGCGGCAGAGACAGAAGAGCGGGGTCGGGGCCGGCTGACCAGG AACCTGGGCGAGCAGCGGCGGGGGCCCGAGGGATTCTGAAGGAAGATTTCCATTAGGTAATTTGTTTAATCAGTGCAAGCGAAATTAAGG GAAAATGGATGTAGAAAATGAGCAGATACTGAATGTAAACCCTGCAGGTGGAGTTGGCATGAACTTAACAGCAGCAGATACTGTGATTTT TGTTGACAGTGACTTTAATCCTCAGAATGACTTGCAAGCAGCTGCCAGGGCTCATCGCATTGGCCAAAACAAGTCTGTTAAAGTTATTCG GCTGATTGGTCGAGACACTGTGGAAGAAATAGTCTATAGGAAAGCAGCCTCCAAACTGCAGCTCACCAACATGATCATAGAAGGAGGCCA TTTTACTCTGGGAGCCCAGAAACCCGCTGCCGATGCTGACCTCCAGTTGAGTGAGATACTCAAATTTGGTTTGGATAAACTGCTGGCCTC TGAGGGGAGCACCATGGATGAAATAGACCTGGAGTCCATACTGGGAGAAACAAAAGATGGCCAGTGGGTCTCTGATGCCTTGCCTGCAGC AGAAGGAGGGAGCAGAGATCAAGAGGAAGGAAAAAATCATATGTACTTATTTGAAGGTAAAGATTATTCTAAAGAGCCCAGTAAGGAAGA CAGAAAATCATTTGAACAACTGGTAAACCTTCAGAAAACCCTTTTGGAGAAAGCTAGTCAAGAGGGCCGATCACTCCGAAATAAAGGCAG TGTTCTCATCCCAGGCCTTGTGGAGGGATCTACCAAAAGGAAGCGGGTTCTGAGTCCAGAAGAGCTGGAGGACAGACAGAAGAAAAGACA AGAAGCAGCTGCCAAGAGAAGGAGACTCATAGAGGAGAAGAAGAGGCAAAAGGAAGAGGCTGAACATAAGAAAAAGATGGCCTGGTGGGA ATCCAACAATTACCAGTCCTTCTGCCTGCCCTCTGAGGAGAGCGAGCCAGAGGACCTTGAGAATGGGGAAGAGAGCTCTGCTGAGCTGGA TTACCAAGACCCAGATGCTACTTCCCTCAAGTACGTTAGTGGTGATGTCACCCACCCTCAGGCTGGGGCCGAGGATGCTCTCATTGTGCA CTGCGTAGATGACTCTGGCCACTGGGGCAGAGGTGGTTTATTTACAGCTCTGGAAAAGCGATCCGCTGAGCCAAGAAAAATATATGAGCT GGCTGGGAAAATGAAAGACCTGAGTTTGGGAGGTGTCCTTTTATTTCCTGTTGATGATAAAGAATCAAGAAACAAAGGGCAAGATTTGTT GGCCTTGATTGTGGCTCAGCATCGTGATCGTTCCAATGTCCTGTCTGGCATTAAGATGGCAGCCCTAGAAGAGGGCCTGAAGAAGATATT TTTAGCAGCAAAAAAGAAGAAAGCAAGTGTTCATCTTCCACGTATTGGACATGCCACGAAAGGTTTTAACTGGTATGGTACTGAGCGACT TATTCGGAAACATCTGGCTGCAAGAGGCATCCCAACTTACATATATTATTTTCCTAGAAGCAAGTCTGCTGTCCTTCATGCACAGTCTTC ATCTTCCTCCTCAAGACAGCTGGTGCCTTAAGAATTGGCCCAGCCTCAGATCCTGTCTTTAGCAACCAGCTAATATTTACCCAGAGGTAC TGCAATAGAGTATTTCAAAATGGAATCAGGATCTGGTGGGCCTCAGAAATTGTCTCTTTTCTGAGTTTCAATTTGGTTCTCCTGGATGTT TTGCTCTGTTTTGGTACCTGTAATATAGGGAAACACAACTTTTTTTGGGAAAGCCCTTTGACCCCAGCTTGCTAGTTGCATAATAATAAA |
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FusionGenePPI for PDCD4_CHD1L |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
PDCD4 | EIF4A2, EIF4A1, RPL5, RPS13, EIF4G1, BTRC, FBXW11, EMD, ELAVL1, RPS6KA1, APOE, PSEN2, PSEN1, NAP1L1, NR1H2, VCP, CSNK2A1, DAXX, CD81, IGSF8, ARPC1B, BTF3, PAIP1, AAMP, TPD52, UFD1L, EIF4A3, TMEM51, COMTD1, RPS6KB2, HNRNPA1, UNK, EIF6, ETF1, NCAPD3, PCF11, EIF3H, EIF3I, PPP2R1B, PRMT5, PSMB6, THOC2, PSMC1, SNRPD1, NTRK1, UBE2S, HIST1H2BG, IBTK, CEP19, XPO1, TGIF2LY | CHD1L | XRCC6, PARP1, HIST2H2AA4, HIST3H2A, XRCC5, H2AFX, RPA3, SUPT16H, H3F3AP6, H2AFZ, RPA2, PRKDC, PARP2, HIST1H2BK, HIST1H2BB, RPA1, API5, EIF4A1, RFC2, CBX1, CBX3, CBX5, XRCC1, APLF, SCYL1, NR4A1, HIST2H2BE, TRIM33, CIAO1, KLK11, KLK5, FAS, KIR2DS2, RNF146, NT5E, ART3, TGOLN2, RNF166, HIST1H2BA, NTRK1, HIST1H2BG, SRPK2, ID1, PLK1, FAM134A, LRRK2, SGOL1, TEAD2, FOXB1, FOXL1, FOXP1, SNW1, CDC5L, XPC, LAMP2, TNKS2, HLTF, CCL22, HSPA8, TNKS, FAM196A, SSRP1, C1orf85, BAALC |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for PDCD4_CHD1L |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for PDCD4_CHD1L |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | PDCD4 | C0027626 | Neoplasm Invasiveness | 1 | CTD_human |
Tgene | CHD1L | C0236969 | Substance-Related Disorders | 1 | CTD_human |