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Fusion gene ID: 26268 |
FusionGeneSummary for PCMTD1_SLCO5A1 |
Fusion gene summary |
Fusion gene information | Fusion gene name: PCMTD1_SLCO5A1 | Fusion gene ID: 26268 | Hgene | Tgene | Gene symbol | PCMTD1 | SLCO5A1 | Gene ID | 115294 | 81796 |
Gene name | protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 | solute carrier organic anion transporter family member 5A1 | |
Synonyms | - | OATP-J|OATP-RP4|OATP5A1|OATPJ|OATPRP4|SLC21A15 | |
Cytomap | 8q11.23 | 8q13.3 | |
Type of gene | protein-coding | protein-coding | |
Description | protein-L-isoaspartate O-methyltransferase domain-containing protein 1 | solute carrier organic anion transporter family member 5A1organic anion transporter polypeptide-related protein 4solute carrier family 21 (organic anion transporter), member 15solute carrier family 21 member 15 | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | Q96MG8 | Q9H2Y9 | |
Ensembl transtripts involved in fusion gene | ENST00000360540, ENST00000544451, ENST00000519559, ENST00000522514, ENST00000521344, | ENST00000260126, ENST00000524945, ENST00000530307, ENST00000528658, | |
Fusion gene scores | * DoF score | 12 X 6 X 10=720 | 3 X 2 X 3=18 |
# samples | 19 | 3 | |
** MAII score | log2(19/720*10)=-1.92199748799873 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(3/18*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: PCMTD1 [Title/Abstract] AND SLCO5A1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | SKCM | TCGA-EE-A2MH-06A | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000360540 | ENST00000260126 | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - |
In-frame | ENST00000360540 | ENST00000524945 | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - |
In-frame | ENST00000360540 | ENST00000530307 | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - |
5CDS-5UTR | ENST00000360540 | ENST00000528658 | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - |
intron-3CDS | ENST00000544451 | ENST00000260126 | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - |
intron-3CDS | ENST00000544451 | ENST00000524945 | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - |
intron-3CDS | ENST00000544451 | ENST00000530307 | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - |
intron-5UTR | ENST00000544451 | ENST00000528658 | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - |
5UTR-3CDS | ENST00000519559 | ENST00000260126 | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - |
5UTR-3CDS | ENST00000519559 | ENST00000524945 | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - |
5UTR-3CDS | ENST00000519559 | ENST00000530307 | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - |
5UTR-5UTR | ENST00000519559 | ENST00000528658 | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - |
Frame-shift | ENST00000522514 | ENST00000260126 | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - |
Frame-shift | ENST00000522514 | ENST00000524945 | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - |
Frame-shift | ENST00000522514 | ENST00000530307 | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - |
5CDS-5UTR | ENST00000522514 | ENST00000528658 | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - |
intron-3CDS | ENST00000521344 | ENST00000260126 | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - |
intron-3CDS | ENST00000521344 | ENST00000524945 | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - |
intron-3CDS | ENST00000521344 | ENST00000530307 | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - |
intron-5UTR | ENST00000521344 | ENST00000528658 | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - |
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FusionProtFeatures for PCMTD1_SLCO5A1 |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
PCMTD1 | SLCO5A1 |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | - | 1 | 10 | 377_383 | 302 | 849 | Compositional bias | Note=Poly-Lys |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | - | 0 | 8 | 377_383 | 302 | 688 | Compositional bias | Note=Poly-Lys |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | - | 0 | 8 | 377_383 | 302 | 794 | Compositional bias | Note=Poly-Lys |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | - | 1 | 10 | 549_603 | 302 | 849 | Domain | Kazal-like |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | - | 0 | 8 | 549_603 | 302 | 688 | Domain | Kazal-like |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | - | 0 | 8 | 549_603 | 302 | 794 | Domain | Kazal-like |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | - | 1 | 10 | 330_344 | 302 | 849 | Topological domain | Extracellular |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | - | 1 | 10 | 370_427 | 302 | 849 | Topological domain | Cytoplasmic |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | - | 1 | 10 | 450_469 | 302 | 849 | Topological domain | Extracellular |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | - | 1 | 10 | 494_497 | 302 | 849 | Topological domain | Cytoplasmic |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | - | 1 | 10 | 522_651 | 302 | 849 | Topological domain | Extracellular |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | - | 1 | 10 | 675_683 | 302 | 849 | Topological domain | Cytoplasmic |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | - | 1 | 10 | 710_742 | 302 | 849 | Topological domain | Extracellular |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | - | 1 | 10 | 761_808 | 302 | 849 | Topological domain | Cytoplasmic |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | - | 0 | 8 | 330_344 | 302 | 688 | Topological domain | Extracellular |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | - | 0 | 8 | 370_427 | 302 | 688 | Topological domain | Cytoplasmic |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | - | 0 | 8 | 450_469 | 302 | 688 | Topological domain | Extracellular |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | - | 0 | 8 | 494_497 | 302 | 688 | Topological domain | Cytoplasmic |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | - | 0 | 8 | 522_651 | 302 | 688 | Topological domain | Extracellular |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | - | 0 | 8 | 675_683 | 302 | 688 | Topological domain | Cytoplasmic |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | - | 0 | 8 | 710_742 | 302 | 688 | Topological domain | Extracellular |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | - | 0 | 8 | 761_808 | 302 | 688 | Topological domain | Cytoplasmic |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | - | 0 | 8 | 330_344 | 302 | 794 | Topological domain | Extracellular |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | - | 0 | 8 | 370_427 | 302 | 794 | Topological domain | Cytoplasmic |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | - | 0 | 8 | 450_469 | 302 | 794 | Topological domain | Extracellular |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | - | 0 | 8 | 494_497 | 302 | 794 | Topological domain | Cytoplasmic |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | - | 0 | 8 | 522_651 | 302 | 794 | Topological domain | Extracellular |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | - | 0 | 8 | 675_683 | 302 | 794 | Topological domain | Cytoplasmic |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | - | 0 | 8 | 710_742 | 302 | 794 | Topological domain | Extracellular |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | - | 0 | 8 | 761_808 | 302 | 794 | Topological domain | Cytoplasmic |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | - | 1 | 10 | 310_329 | 302 | 849 | Transmembrane | Helical%3B Name%3D5 |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | - | 1 | 10 | 345_369 | 302 | 849 | Transmembrane | Helical%3B Name%3D6 |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | - | 1 | 10 | 428_449 | 302 | 849 | Transmembrane | Helical%3B Name%3D7 |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | - | 1 | 10 | 470_493 | 302 | 849 | Transmembrane | Helical%3B Name%3D8 |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | - | 1 | 10 | 498_521 | 302 | 849 | Transmembrane | Helical%3B Name%3D9 |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | - | 1 | 10 | 652_674 | 302 | 849 | Transmembrane | Helical%3B Name%3D10 |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | - | 1 | 10 | 684_709 | 302 | 849 | Transmembrane | Helical%3B Name%3D11 |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | - | 1 | 10 | 743_760 | 302 | 849 | Transmembrane | Helical%3B Name%3D12 |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | - | 0 | 8 | 310_329 | 302 | 688 | Transmembrane | Helical%3B Name%3D5 |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | - | 0 | 8 | 345_369 | 302 | 688 | Transmembrane | Helical%3B Name%3D6 |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | - | 0 | 8 | 428_449 | 302 | 688 | Transmembrane | Helical%3B Name%3D7 |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | - | 0 | 8 | 470_493 | 302 | 688 | Transmembrane | Helical%3B Name%3D8 |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | - | 0 | 8 | 498_521 | 302 | 688 | Transmembrane | Helical%3B Name%3D9 |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | - | 0 | 8 | 652_674 | 302 | 688 | Transmembrane | Helical%3B Name%3D10 |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | - | 0 | 8 | 684_709 | 302 | 688 | Transmembrane | Helical%3B Name%3D11 |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | - | 0 | 8 | 743_760 | 302 | 688 | Transmembrane | Helical%3B Name%3D12 |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | - | 0 | 8 | 310_329 | 302 | 794 | Transmembrane | Helical%3B Name%3D5 |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | - | 0 | 8 | 345_369 | 302 | 794 | Transmembrane | Helical%3B Name%3D6 |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | - | 0 | 8 | 428_449 | 302 | 794 | Transmembrane | Helical%3B Name%3D7 |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | - | 0 | 8 | 470_493 | 302 | 794 | Transmembrane | Helical%3B Name%3D8 |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | - | 0 | 8 | 498_521 | 302 | 794 | Transmembrane | Helical%3B Name%3D9 |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | - | 0 | 8 | 652_674 | 302 | 794 | Transmembrane | Helical%3B Name%3D10 |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | - | 0 | 8 | 684_709 | 302 | 794 | Transmembrane | Helical%3B Name%3D11 |
Tgene | >SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | - | 0 | 8 | 743_760 | 302 | 794 | Transmembrane | Helical%3B Name%3D12 |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | - | 1 | 10 | 150_168 | 302 | 849 | Topological domain | Extracellular |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | - | 1 | 10 | 190_195 | 302 | 849 | Topological domain | Cytoplasmic |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | - | 1 | 10 | 1_128 | 302 | 849 | Topological domain | Cytoplasmic |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | - | 1 | 10 | 221_260 | 302 | 849 | Topological domain | Extracellular |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | - | 1 | 10 | 291_309 | 302 | 849 | Topological domain | Cytoplasmic |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | - | 0 | 8 | 150_168 | 302 | 688 | Topological domain | Extracellular |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | - | 0 | 8 | 190_195 | 302 | 688 | Topological domain | Cytoplasmic |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | - | 0 | 8 | 1_128 | 302 | 688 | Topological domain | Cytoplasmic |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | - | 0 | 8 | 221_260 | 302 | 688 | Topological domain | Extracellular |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | - | 0 | 8 | 291_309 | 302 | 688 | Topological domain | Cytoplasmic |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | - | 0 | 8 | 150_168 | 302 | 794 | Topological domain | Extracellular |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | - | 0 | 8 | 190_195 | 302 | 794 | Topological domain | Cytoplasmic |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | - | 0 | 8 | 1_128 | 302 | 794 | Topological domain | Cytoplasmic |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | - | 0 | 8 | 221_260 | 302 | 794 | Topological domain | Extracellular |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | - | 0 | 8 | 291_309 | 302 | 794 | Topological domain | Cytoplasmic |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | - | 1 | 10 | 129_149 | 302 | 849 | Transmembrane | Helical%3B Name%3D1 |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | - | 1 | 10 | 169_189 | 302 | 849 | Transmembrane | Helical%3B Name%3D2 |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | - | 1 | 10 | 196_220 | 302 | 849 | Transmembrane | Helical%3B Name%3D3 |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | - | 1 | 10 | 261_290 | 302 | 849 | Transmembrane | Helical%3B Name%3D4 |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | - | 0 | 8 | 129_149 | 302 | 688 | Transmembrane | Helical%3B Name%3D1 |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | - | 0 | 8 | 169_189 | 302 | 688 | Transmembrane | Helical%3B Name%3D2 |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | - | 0 | 8 | 196_220 | 302 | 688 | Transmembrane | Helical%3B Name%3D3 |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | - | 0 | 8 | 261_290 | 302 | 688 | Transmembrane | Helical%3B Name%3D4 |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | - | 0 | 8 | 129_149 | 302 | 794 | Transmembrane | Helical%3B Name%3D1 |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | - | 0 | 8 | 169_189 | 302 | 794 | Transmembrane | Helical%3B Name%3D2 |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | - | 0 | 8 | 196_220 | 302 | 794 | Transmembrane | Helical%3B Name%3D3 |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | - | 0 | 8 | 261_290 | 302 | 794 | Transmembrane | Helical%3B Name%3D4 |
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FusionGeneSequence for PCMTD1_SLCO5A1 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_PCMTD1_ENST00000360540_chr8_52758221_-_SLCO5A1_ENST00000260126_chr8_70674110_-_683aa MGGAVSAGEDNDDLIDNLKEAQYIRTERVEQAFRAIDRGDYYLEGYRDNAYKDLAWKHGNIHLSAPCIYSEVMEALKLQPGLSFLNLGSG TGYLSTMVGLILGPFGINHGIELHSDVVEYAKEKLESFIKNSDSFDNHHVCHGSTWPCSGIFIRWTSYWFLCXSQKSCSPXPEXPSFHWK LVEWIPPLCHCNVSCDIPNVYFPKKASTSTQEKEKEKIFCXCCXXXRCSEGEIKQQXTSGQKSFFDGIWKGCQRPTKSSCQDLKQHDIPF CEFVIHSXECHCNCFHYLHSQVHRVTVWYPSLQCQHLHWGYYRPQCWCWYCPRRLHYKKIETWCQRICKTSNDLQWCVFTMFFNPIYCWM XKHXSRGHKHPLYNRTFSHHAPXESDRKLQRXLWLXNTRVXASLWIRWNYILXPLSGWLCXXWXSXHWDTELYRMHLCPKSPSDHSTHRG TAKSAPCGYCQDLSQXERLCCVWEMXTDLQYSYPILSFSFHSHLHHSMCPTISYHSNTQVRRRXGETFCTGNAVCFVANTCIHSYSNLLW SSHXHHLHALATGMWCAGFLLGVQRDVVSFCVFWFGCRPQIRWVYFYFSGLVLHKIQGGWTAEAEAERISPEHREXESGTPRQCPDXILP >In-frame_PCMTD1_ENST00000360540_chr8_52758221_-_SLCO5A1_ENST00000524945_chr8_70674110_-_522aa MGGAVSAGEDNDDLIDNLKEAQYIRTERVEQAFRAIDRGDYYLEGYRDNAYKDLAWKHGNIHLSAPCIYSEVMEALKLQPGLSFLNLGSG TGYLSTMVGLILGPFGINHGIELHSDVVEYAKEKLESFIKNSDSFDNHHVCHGSTWPCSGIFIRWTSYWFLCXSQKSCSPXPEXPSFHWK LVEWIPPLCHCNVSCDIPNVYFPKKASTSTQEKEKEKIFCXCCXXXRCSEGEIKQQXTSGQKSFFDGIWKGCQRPTKSSCQDLKQHDIPF CEFVIHSXECHCNCFHYLHSQVHRVTVWYPSLQCQHLHWGYYRPQCWCWYCPRRLHYKKIETWCQRICKTSNDLQWCVFTMFFNPIYCWM XKHXSRGHKHPLYNRTFSHHAPXESDRKLQRXLWLXNTRVXASLWIRWNYILXPLSGWLCXXWXSXHWDTELYRMHLCPKSPSDHSTHRG >In-frame_PCMTD1_ENST00000360540_chr8_52758221_-_SLCO5A1_ENST00000530307_chr8_70674110_-_628aa MGGAVSAGEDNDDLIDNLKEAQYIRTERVEQAFRAIDRGDYYLEGYRDNAYKDLAWKHGNIHLSAPCIYSEVMEALKLQPGLSFLNLGSG TGYLSTMVGLILGPFGINHGIELHSDVVEYAKEKLESFIKNSDSFDNHHVCHGSTWPCSGIFIRWTSYWFLCXSQKSCSPXPEXPSFHWK LVEWIPPLCHCNVSCDIPNVYFPKKASTSTQEKEKEKIFCXCCXXXRCSEGEIKQQXTSGQKSFFDGIWKGCQRGYYRPQCWCWYCPRRL HYKKIETWCQRICKTSNDLQWCVFTMFFNPIYCWMXKHXSRGHKHPLYNRTFSHHAPXESDRKLQRXLWLXNTRVXASLWIRWNYILXPL SGWLCXXWXSXHWDTELYRMHLCPKSPSDHSTHRGTAKSAPCGYCQDLSQXERLCCVWEMXTDLQYSYPILSFSFHSHLHHSMCPTISYH SNTQVRRRXGETFCTGNAVCFVANTCIHSYSNLLWSSHXHHLHALATGMWCAGFLLGVQRDVVSFCVFWFGCRPQIRWVYFYFSGLVLHK |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_PCMTD1_ENST00000360540_chr8_52758221_-_SLCO5A1_ENST00000260126_chr8_70674110_-_2050nt ATGGGAGGAGCTGTGAGTGCTGGGGAAGATAATGATGACTTAATTGATAATTTAAAAGAAGCTCAGTATATTCGTACTGAAAGAGTGGAG CAAGCCTTCAGAGCGATTGATCGTGGAGATTACTATTTGGAAGGCTACAGAGACAATGCTTACAAAGACTTAGCCTGGAAGCATGGAAAC ATCCACTTGTCAGCACCTTGCATTTATTCTGAAGTTATGGAAGCATTGAAACTTCAACCAGGATTGTCTTTTCTTAACCTGGGAAGTGGA ACCGGATATTTAAGTACAATGGTGGGCTTAATTTTAGGTCCTTTTGGAATAAATCATGGGATTGAGCTTCATTCAGATGTGGTGGAATAT GCCAAGGAAAAACTGGAGAGCTTCATCAAAAATAGTGATAGCTTTGATAACCATCATGTATGTCATGGGAGCACTTGGCCCTGCAGTGGG ATATTTATTAGGTGGACTTCTTATTGGTTTTTATGTTGATCCCAGAAATCCTGTTCACCTTGACCAGAATGACCCTCGTTTCATTGGAAA CTGGTGGAGTGGATTCCTCCTTTGTGCCATTGCAATGTTTCTTGTGATATTCCCAATGTTTACTTTCCCAAAAAAGCTTCCACCTCGACA CAAGAAAAAGAAAAAGAAAAAATTTTCTGTTGATGCTGTTAGTGATGACGATGTTCTGAAGGAGAAATCAAACAACAGTGAACAAGCGGA CAAAAAAGTTTCTTCGATGGGATTTGGAAAGGATGTCAGAGACCTACCAAGAGCAGCTGTCAGGATCTTAAGCAACATGACATTCCTTTT TGTGAGTTTGTCATACACAGCTGAGAGTGCCATTGTAACTGCTTTCATTACCTTCATTCCCAAGTTCATCGAGTCACAGTTTGGTATCCC AGCCTCCAATGCCAGCATCTACACTGGGGTTATTATCGTCCCCAGTGCTGGTGTTGGTATTGTCCTCGGAGGCTACATTATAAAAAAATT GAAACTTGGTGCCAGAGAATCTGCAAAACTAGCAATGATCTGCAGTGGTGTGTCTTTACTATGTTTTTCAACCCTATTTATTGTTGGATG TGAAAGCATTAATCTAGGGGGCATAAACATCCCTTATACAACAGGACCTTCTCTCACCATGCCCCATAGGAATCTGACAGGAAGCTGCAA CGTTAATTGTGGTTGTAAAATACACGAGTATGAGCCAGTCTGTGGATCAGATGGAATTACATACTTTAACCCTTGTCTGGCTGGCTGTGT TAATAGTGGTAATCTTAGCACTGGGATACGGAATTATACAGAATGCACCTGTGTCCAAAGTCGCCAAGTGATCACTCCACCCACCGTGGG ACAGCGAAGTCAGCTCCGTGTGGTTATTGTCAAGACTTATCTCAATGAGAACGGCTATGCTGTGTCTGGGAAATGTAAACGGACCTGCAA TACTCTTATCCCATTCTTAGTTTTTCTTTTCATAGTCACCTTCATCACAGCATGTGCCCAACCATCAGCTATCATAGTAACACTCAGGTC CGTAGAAGATGAGGAGAGACCTTTTGCACTGGGAATGCAGTTTGTTTTGTTGCGAACACTTGCATACATTCCTACTCCAATCTACTTTGG AGCAGTCATTGACACCACCTGCATGCTCTGGCAACAGGAATGTGGTGTGCAGGGTTCTTGCTGGGAGTACAACGTGACGTCGTTTCGTTT TGTGTATTTTGGTTTGGCTGCCGGCCTCAAATTCGTTGGGTTTATTTTTATTTTTCTGGCCTGGTACTCCATAAAATACAAGGAGGATGG ACTGCAGAGGCGGAGGCAGAGAGAATTTCCCCTGAGCACCGTGAGTGAGAGAGTGGGACACCCCGACAATGCCCGGACTAGATCTTGCCC AGCTTTCAGCACCCAGGGAGAATTCCACGAAGAGACTGGCCTGCAAAAAGGGATCCAGTGCGCAGCACAGACCTACCCGGGGCCCTTCCC >In-frame_PCMTD1_ENST00000360540_chr8_52758221_-_SLCO5A1_ENST00000524945_chr8_70674110_-_1567nt ATGGGAGGAGCTGTGAGTGCTGGGGAAGATAATGATGACTTAATTGATAATTTAAAAGAAGCTCAGTATATTCGTACTGAAAGAGTGGAG CAAGCCTTCAGAGCGATTGATCGTGGAGATTACTATTTGGAAGGCTACAGAGACAATGCTTACAAAGACTTAGCCTGGAAGCATGGAAAC ATCCACTTGTCAGCACCTTGCATTTATTCTGAAGTTATGGAAGCATTGAAACTTCAACCAGGATTGTCTTTTCTTAACCTGGGAAGTGGA ACCGGATATTTAAGTACAATGGTGGGCTTAATTTTAGGTCCTTTTGGAATAAATCATGGGATTGAGCTTCATTCAGATGTGGTGGAATAT GCCAAGGAAAAACTGGAGAGCTTCATCAAAAATAGTGATAGCTTTGATAACCATCATGTATGTCATGGGAGCACTTGGCCCTGCAGTGGG ATATTTATTAGGTGGACTTCTTATTGGTTTTTATGTTGATCCCAGAAATCCTGTTCACCTTGACCAGAATGACCCTCGTTTCATTGGAAA CTGGTGGAGTGGATTCCTCCTTTGTGCCATTGCAATGTTTCTTGTGATATTCCCAATGTTTACTTTCCCAAAAAAGCTTCCACCTCGACA CAAGAAAAAGAAAAAGAAAAAATTTTCTGTTGATGCTGTTAGTGATGACGATGTTCTGAAGGAGAAATCAAACAACAGTGAACAAGCGGA CAAAAAAGTTTCTTCGATGGGATTTGGAAAGGATGTCAGAGACCTACCAAGAGCAGCTGTCAGGATCTTAAGCAACATGACATTCCTTTT TGTGAGTTTGTCATACACAGCTGAGAGTGCCATTGTAACTGCTTTCATTACCTTCATTCCCAAGTTCATCGAGTCACAGTTTGGTATCCC AGCCTCCAATGCCAGCATCTACACTGGGGTTATTATCGTCCCCAGTGCTGGTGTTGGTATTGTCCTCGGAGGCTACATTATAAAAAAATT GAAACTTGGTGCCAGAGAATCTGCAAAACTAGCAATGATCTGCAGTGGTGTGTCTTTACTATGTTTTTCAACCCTATTTATTGTTGGATG TGAAAGCATTAATCTAGGGGGCATAAACATCCCTTATACAACAGGACCTTCTCTCACCATGCCCCATAGGAATCTGACAGGAAGCTGCAA CGTTAATTGTGGTTGTAAAATACACGAGTATGAGCCAGTCTGTGGATCAGATGGAATTACATACTTTAACCCTTGTCTGGCTGGCTGTGT TAATAGTGGTAATCTTAGCACTGGGATACGGAATTATACAGAATGCACCTGTGTCCAAAGTCGCCAAGTGATCACTCCACCCACCGTGGG ACAGCGAAGTCAGCTCCGTGTGGTTATTGTCAAGACTTATCTCAATGAGAACGGCTATGCTGTGTCTGGGAAATGTAAACGGACCTGCAA TACTCTTATCCCATTCTTAGTTTTTCTTTTCATAGTCACCTTCATCACAGCATGTGCCCAACCATCAGCTATCATAGTAACACTCAGCAT >In-frame_PCMTD1_ENST00000360540_chr8_52758221_-_SLCO5A1_ENST00000530307_chr8_70674110_-_1885nt ATGGGAGGAGCTGTGAGTGCTGGGGAAGATAATGATGACTTAATTGATAATTTAAAAGAAGCTCAGTATATTCGTACTGAAAGAGTGGAG CAAGCCTTCAGAGCGATTGATCGTGGAGATTACTATTTGGAAGGCTACAGAGACAATGCTTACAAAGACTTAGCCTGGAAGCATGGAAAC ATCCACTTGTCAGCACCTTGCATTTATTCTGAAGTTATGGAAGCATTGAAACTTCAACCAGGATTGTCTTTTCTTAACCTGGGAAGTGGA ACCGGATATTTAAGTACAATGGTGGGCTTAATTTTAGGTCCTTTTGGAATAAATCATGGGATTGAGCTTCATTCAGATGTGGTGGAATAT GCCAAGGAAAAACTGGAGAGCTTCATCAAAAATAGTGATAGCTTTGATAACCATCATGTATGTCATGGGAGCACTTGGCCCTGCAGTGGG ATATTTATTAGGTGGACTTCTTATTGGTTTTTATGTTGATCCCAGAAATCCTGTTCACCTTGACCAGAATGACCCTCGTTTCATTGGAAA CTGGTGGAGTGGATTCCTCCTTTGTGCCATTGCAATGTTTCTTGTGATATTCCCAATGTTTACTTTCCCAAAAAAGCTTCCACCTCGACA CAAGAAAAAGAAAAAGAAAAAATTTTCTGTTGATGCTGTTAGTGATGACGATGTTCTGAAGGAGAAATCAAACAACAGTGAACAAGCGGA CAAAAAAGTTTCTTCGATGGGATTTGGAAAGGATGTCAGAGGGGTTATTATCGTCCCCAGTGCTGGTGTTGGTATTGTCCTCGGAGGCTA CATTATAAAAAAATTGAAACTTGGTGCCAGAGAATCTGCAAAACTAGCAATGATCTGCAGTGGTGTGTCTTTACTATGTTTTTCAACCCT ATTTATTGTTGGATGTGAAAGCATTAATCTAGGGGGCATAAACATCCCTTATACAACAGGACCTTCTCTCACCATGCCCCATAGGAATCT GACAGGAAGCTGCAACGTTAATTGTGGTTGTAAAATACACGAGTATGAGCCAGTCTGTGGATCAGATGGAATTACATACTTTAACCCTTG TCTGGCTGGCTGTGTTAATAGTGGTAATCTTAGCACTGGGATACGGAATTATACAGAATGCACCTGTGTCCAAAGTCGCCAAGTGATCAC TCCACCCACCGTGGGACAGCGAAGTCAGCTCCGTGTGGTTATTGTCAAGACTTATCTCAATGAGAACGGCTATGCTGTGTCTGGGAAATG TAAACGGACCTGCAATACTCTTATCCCATTCTTAGTTTTTCTTTTCATAGTCACCTTCATCACAGCATGTGCCCAACCATCAGCTATCAT AGTAACACTCAGGTCCGTAGAAGATGAGGAGAGACCTTTTGCACTGGGAATGCAGTTTGTTTTGTTGCGAACACTTGCATACATTCCTAC TCCAATCTACTTTGGAGCAGTCATTGACACCACCTGCATGCTCTGGCAACAGGAATGTGGTGTGCAGGGTTCTTGCTGGGAGTACAACGT GACGTCGTTTCGTTTTGTGTATTTTGGTTTGGCTGCCGGCCTCAAATTCGTTGGGTTTATTTTTATTTTTCTGGCCTGGTACTCCATAAA ATACAAGGAGGATGGACTGCAGAGGCGGAGGCAGAGAGAATTTCCCCTGAGCACCGTGAGTGAGAGAGTGGGACACCCCGACAATGCCCG GACTAGATCTTGCCCAGCTTTCAGCACCCAGGGAGAATTCCACGAAGAGACTGGCCTGCAAAAAGGGATCCAGTGCGCAGCACAGACCTA |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_PCMTD1_ENST00000360540_chr8_52758221_-_SLCO5A1_ENST00000260126_chr8_70674110_-_8279nt GGCGGCTCCGGAGTCCGGGAGGCTCTGGCTGCTCCAGTCGCGGGTCCGGGCCCCGCCTCTCCACTCGGCGGTGGCGTCCGTGTTGTTATT GTGGTGGTAGCGGCGTCTGGCTGCTGCGGACCCCGCCGAGTCCTAGCGCCTGGCCTGCGCGCCGCTGCCCGCGCCACAGCCCCATCACTG AGAAGAATTTTTTCACTGTATAGTTGCCTCTGCACTTAAAGCAGGCTTGGTCCATGAATCCCATGACAAGAGCTTTGAGGACATGAGGAG CATTCTTTGTTCAAACATACTGTGTTTTCCTTTGGATCACTGGATTAATTTATTTTTGGAAATCAAGTGCAATATTGGAAGCCATTTCTA CTAATTTTATTTCACTTTTAAATTTATGATTTGATTTGAATACTATCATGGGAGGAGCTGTGAGTGCTGGGGAAGATAATGATGACTTAA TTGATAATTTAAAAGAAGCTCAGTATATTCGTACTGAAAGAGTGGAGCAAGCCTTCAGAGCGATTGATCGTGGAGATTACTATTTGGAAG GCTACAGAGACAATGCTTACAAAGACTTAGCCTGGAAGCATGGAAACATCCACTTGTCAGCACCTTGCATTTATTCTGAAGTTATGGAAG CATTGAAACTTCAACCAGGATTGTCTTTTCTTAACCTGGGAAGTGGAACCGGATATTTAAGTACAATGGTGGGCTTAATTTTAGGTCCTT TTGGAATAAATCATGGGATTGAGCTTCATTCAGATGTGGTGGAATATGCCAAGGAAAAACTGGAGAGCTTCATCAAAAATAGTGATAGCT TTGATAACCATCATGTATGTCATGGGAGCACTTGGCCCTGCAGTGGGATATTTATTAGGTGGACTTCTTATTGGTTTTTATGTTGATCCC AGAAATCCTGTTCACCTTGACCAGAATGACCCTCGTTTCATTGGAAACTGGTGGAGTGGATTCCTCCTTTGTGCCATTGCAATGTTTCTT GTGATATTCCCAATGTTTACTTTCCCAAAAAAGCTTCCACCTCGACACAAGAAAAAGAAAAAGAAAAAATTTTCTGTTGATGCTGTTAGT GATGACGATGTTCTGAAGGAGAAATCAAACAACAGTGAACAAGCGGACAAAAAAGTTTCTTCGATGGGATTTGGAAAGGATGTCAGAGAC CTACCAAGAGCAGCTGTCAGGATCTTAAGCAACATGACATTCCTTTTTGTGAGTTTGTCATACACAGCTGAGAGTGCCATTGTAACTGCT TTCATTACCTTCATTCCCAAGTTCATCGAGTCACAGTTTGGTATCCCAGCCTCCAATGCCAGCATCTACACTGGGGTTATTATCGTCCCC AGTGCTGGTGTTGGTATTGTCCTCGGAGGCTACATTATAAAAAAATTGAAACTTGGTGCCAGAGAATCTGCAAAACTAGCAATGATCTGC AGTGGTGTGTCTTTACTATGTTTTTCAACCCTATTTATTGTTGGATGTGAAAGCATTAATCTAGGGGGCATAAACATCCCTTATACAACA GGACCTTCTCTCACCATGCCCCATAGGAATCTGACAGGAAGCTGCAACGTTAATTGTGGTTGTAAAATACACGAGTATGAGCCAGTCTGT GGATCAGATGGAATTACATACTTTAACCCTTGTCTGGCTGGCTGTGTTAATAGTGGTAATCTTAGCACTGGGATACGGAATTATACAGAA TGCACCTGTGTCCAAAGTCGCCAAGTGATCACTCCACCCACCGTGGGACAGCGAAGTCAGCTCCGTGTGGTTATTGTCAAGACTTATCTC AATGAGAACGGCTATGCTGTGTCTGGGAAATGTAAACGGACCTGCAATACTCTTATCCCATTCTTAGTTTTTCTTTTCATAGTCACCTTC ATCACAGCATGTGCCCAACCATCAGCTATCATAGTAACACTCAGGTCCGTAGAAGATGAGGAGAGACCTTTTGCACTGGGAATGCAGTTT GTTTTGTTGCGAACACTTGCATACATTCCTACTCCAATCTACTTTGGAGCAGTCATTGACACCACCTGCATGCTCTGGCAACAGGAATGT GGTGTGCAGGGTTCTTGCTGGGAGTACAACGTGACGTCGTTTCGTTTTGTGTATTTTGGTTTGGCTGCCGGCCTCAAATTCGTTGGGTTT ATTTTTATTTTTCTGGCCTGGTACTCCATAAAATACAAGGAGGATGGACTGCAGAGGCGGAGGCAGAGAGAATTTCCCCTGAGCACCGTG AGTGAGAGAGTGGGACACCCCGACAATGCCCGGACTAGATCTTGCCCAGCTTTCAGCACCCAGGGAGAATTCCACGAAGAGACTGGCCTG CAAAAAGGGATCCAGTGCGCAGCACAGACCTACCCGGGGCCCTTCCCAGAAGCAATAAGTTCCTCTGCGGACCCGGGGCTGGAAGAGAGC CCCGCTGCCTTGGAGCCGCCCTCCTGAAGCTTGAAAATGGAAGAATTTAGTTTTGTTGGTTGAATTGAAAATGGCGACTTGAGAAACAAC TGTGCCTTCTTTTCTTTCTTTCTTTTTTTTAACCTCTACAGACACAATCCTCAAACCAACAAAACTCAGTATACACAGCCGCTATTCATT GAGGGCTGGATACCTCAACAAGACTGAGAGCCTTTCCCCGCTTCTCTCCAAGAAGGAGACGTTCAGCTAGATTTGTTCCCATTTCCGTTG TGTTAATTCAAAGCTCATGCTCCCCTACGGTACAGGCTGAGGTACACGGTTAGCAAAACCATGGGAAGGGGAATGGCGGTGCATATCATT AACTAACACTCCAAACAAAGGTGAGCTTGCCCAGGACTTGGCATTTCCAAATCAAAGTTTTTAGATATGAACACCTACTGTGAGTTCTGC TACAAAGCACAAATGAATTTGTCTCAACTATGCAATTTGATTGGAAAAATGTATGTGCAGCATGTTACATTTACTTTCACGGAATAAAGC AGATATGTTTCTGAAAAGAGGAAGCTGAACTTTCCATCCAGTACTGTTGATAGCATTTTAAGCCATAGCAGTTATAAATCAGGTAGAGTT TTTCAAATGCTTCAGAGGAACCATAGGCATAGTGTGATAGAAGGAACAGCTACTTCAGGTCGTAGGACACATTCTCTTTCAGTCTGCCTG CCCCATCCTAAGATAAAGAGGCTGCTGAATCATAAATCTGATAGCTTAAATATAAACTCCAGTATTCTTTTGTAAGGAGCATTAAAACTA GTGTGCTAAACAATATGGCTAGAAACTGTAATTTGAAATGCATAATAGGGAAAGAAAATGACAGCTTTCTCATCCAAGAAAATTGTTGCA GAAATTTTCTTTAGCTCTACGGGCCCACAAAGTCACTGGGAAAAGTCCCACCTGAGTATTTTAGTTACATCTTGAAAGCACTGGCAAATC TGTGTGGTTTTCTTTTTTTCTGGACAGAAAATTGCTGTGGTTGCTCCTGAAAATGCATACTTATATCAGGAAATCTGTGCCTGGGATATG AAAATCACTTAGAATACAGGAGGAGGGAGATCTGTGTTCTGGAACAGAATATGATCTTAAGTAATTGTTGAAAATTATGTAAAATAAACC AGTCCATCCGAAAGAACCCTACTTTATCAGAGATAGAATCGTTTTACACTACCCTTTGATTCCCCCTTACTGTAAGTTTCTGGCAGTGAT TCTGAGAGAGGATTTTTCTGTTCCTAAATGCACTTTGGGTTCATTACCCATCATTCTTTTCAGTACCTCCCAGCACATCACTTTGAAGTA AGCATCATAGAGAATGCTTTCTACATGGCTCTTAAGATAGATGCTTCCTGACGGCGCTAACGGATTGACAGCAAGTTAGCTCAGGGGTTC TGGCTGCCAGGGAGTGTAAGGGCCAAATGCTGATATAATTGTGAACTTTTTCTGCCAAGGAGCCTATGGTCATGGAGGGCTAATTAGGGA AATGTTTTTCTCTTCTGGTTTACCCTTATCCCCAGAAGAGATGTGATTGACAGACTGTTCCATGATTCAGGCTTCTGCTCTCCAACCTTG CTTGACTGCACAGGTGGAATTGTGCAAATACTCCTGGGTATAAGGCTGTTTCCCTCTCTTCCTAGGAATGACATTGGTCAAACAGTTCTC TTGGTTGCATACAGTTTGTGTTAACACTGTTAGACTGAACAATGTCTACAAGGGGTGGAGCTAGTGGTCTCAGGGGCTAAGGACTTCCCT CTGGTTCCTGGGCTTGGCTCTCGGGGAGGTGAGGATTCTTGCTTGGTTAAGACTGTAATTGCACTGGTAATTGTCAGACTCTGGCCAATG TGGCATATATTGGAAGTATTCAAAAAATCTTGCTGATTAAGAAAACCTTGCTGATTGAACTAGTGTCTCCTTTGGGGCCTCAGGGTTCCC CTTTACCCTCTATGGGAGAGCTCTGATCCTTTAAAGGAGAAATTTTCCTTTGGTGTGGGAGTTAAAGATATGTAGATTGGAGAGGTGTGG TGTTTTCTTAATTTTCTTCTGATCATTAAGATACTGCATTGAGAGAATTTTGGTGGGATTGGCACTTTTTCTGGTAGCTAAGATTGCTGG ACTCAGCACGGAGTAGTTAGAGAGCCCCCTTACTCCCTTTGCTGCCATGAACAGTCATCCAGTTTGGCGATCACTGATCAGGTGCCAGGT ATCTTCAGGTGTCATATTACCTGATTACCATCTGCCACTCCATAAAATCCTTTGGGATGATTGGGCCAGAACTCAAAGAAATGGGCCTGA AATGTGCACCACAGTGTTAATATTGTACTTCCTCAAGTATCTGCTCCTTATAAATAGCAGGTATTTCATTAATGTGTTGTTGGTGAATGT AGACTAAGTAGTAAAAATCATGAGAAAATAAAGCTTTGGAATATGTACCAATTAAGAGTGGTTCACAAAATACTTGGGGCTATGGTAGCA TCACTGGAATATTACATAGCCAACTGAAGTGACTGTTTTGTAGATGATACCATTTAATTGTATATATAGGGTCTTATATGTTTCTTAATA AATTGATCCCATTACTTTATAGTCACAGCTCCTATTAGAAGTTTTAATGAAGACTCTCCATGAGCTTAGGCTTCAAATTACTTGTTTTGG AAAAGGTCATCTTGTCCTTTATAAACTGTAAATTCATATATTATTTAGCTTTAATATGCAAATACAATATCCTTGAGTTCATCCTATTAA TTTAGAAACTCCCAGGAGGTAAGATGGGTGGTTGGAGCGCATTCTTTGGTTATTTTCATTAGCATTAAGTCCTTATTCTTTATAGGTGGA TTTAATTCTTGAAAATATTCAAAAGTAATTCAGAGTCAAGGTGTTGGGGATGGAGAGAAAGGAGGAACAGAGAGGAAAAAAATTAGCATT TGTTGAGTGTTGACGATTTGTAGAGCATTTTGACAAGCACTTAATATACATCATCATTCATTTTGATCCTCTTAATTACCTTGCAAAGAT TTGATTCTTTTTTTTTTTTTGAGACAGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCTTAATCTCAGCTCACTGCAACCTCCGC TTCCTGGGTTCAAGTGATTCTCCTGTTTCAGTCTCCTGAGGAACTGGGATTAAGGTGTGTGCCACCACACCCAGCTATTTTTTTTCTATT TTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCCACCTGCCTTGGCCTCTCAAAGTGC TGGGATTACAGGCATGAGCCACCATGCCCGGCTGATTTTATTATTTTTTTAAAAAACATATGAAACCAAGACTCAGAGAAGTAAAATAAC TCATTTAGGATCATACAGAATGGTAAAGTCAGGATTCAGACATAGATTTCTCTCACTCCATTATTCATTTTTTACACTACGCAATGTATA CAATAGCTTTTGGTTAACAAAGGCAAGGTGACTATAAAATCGTGAGATTAAAGCATTTCAATTTTTTGATATATTACCGTTTATGAAGAG TAGAGAGGTTTTTTTGTGTAAATAAAAAAAACTGTAGGAAACATCTGTAGGAAATATCAAGATTTAATGTTTAACTAGATTTTCAAGGTA AATTTACATTTATTTAGCTAAGTGTTATATTAAAGTTATTTGTCATAACATACCTCAAATATTTATTTATAGTTCATATTTAATACAGAA CAAATCTAGTCTTCGTGTTAACATCGGGTCTCGGCAGAGTTTCTGAAATGAAACATTATGAAGAAAGGTAGTTCAGATTTGTTGAATCTG AGCTTTAGGGATTTCAAGTGTATTTTTTTTTATTTTCCTCTTTCAGAATATTAACATCTCTATTAGTTTTTTGATGAATATGAGTTTTAA GATTCCTAATAAGGGTTTTAAGTGAACACACATAAAATACATATCAAACCACTGATCCCGATTGTTCCCTTTAGTCGCTGTGACATTGTT ACCTTTAGTGGCATGCACTTGGAAATGTCAGCCTTCAGAGAAGGGGGAGTTACATGGAGTAAGGCCTCATGGATGTCATGGTGGTCCTCC ATGTTCACCAACCACCAAGAAAATTCTTCTTCAGTCCACAATTCCAGCTTGCGCTCTTTGGTGCACTTGGAGCCAGAAAGTGTCTTTTTG GCCCTGTTTTGTAGAAACCGTGCATGTACCAAAGAGAAACTTTAGAGTTTGGATGGAGCTGAAGCATTGATGGGAATTCCCTAGTGCACC CAGGAGCAGGAGGCAAGCCCAAGCCTCGGGTGGTAGCCAATTATATTTTGTGATCGTGTATGTACTTAAAACATCAGAGATGACACAGCA CATGAATATAACTATTGATATGTAGGTGCATACTGAGTATTCTAAGTAGCAGATAGATACCAAAATACTGTATAATCCCAGAATTGCCTA AACTGCAGGTTTGCTAGTTCTCTGTTATACAGACCAGTAGGTAGCCTTTCCACACATTTGTGTTTTCTCTTCCATAATAAGAGAGTGCTG CGGCTGGCAGGCAAAGGTAGTTGCCTCATGCACTTTATCTTTTTGTCTTTTTCTCTTCTTCATCTTTTGGGATGCTGCTGGCTGTATCTG TCCCAAACTTCTTGTTGCATTAGAATCAGATCTGTGTATGTTTGAGGAGGTTTTATTTTAAAGACTTCAGTTTTACTCAGCTCTAGGAAG GGTCAAATACAACAACAACAACAAAAAACAGAAAACAAAAAACCCTCCCTAGGTGTTTGCTTTTGCAACATTAAAAAAAATGCCTTGGTG CTAAAAAGTATTTAATGACGCATGTTCACCACTAAAAAGCGCCACTGAATTCACAGTATTTCACTGCTAAGTGGCTGCATGTACTTTGTG TTTGGAAATCTGAAGAATTTTCCAGAAAACAAGCATCCATTACTCTCATTTCAACAGTTACTCCATCTATGCTGCAAAAATGAAGCGTGA AAGGGGGGATACTTTTCTATGGAATACTCAGTGCTTTTGATATTTATTTTAGCAAGAATAATCAGATGCCAAAAATAATTTCAGAGAAAG GTAGAAAAAATATTTCAGGTAACCTTTTCTTATTTCTTCTCCAAAAAGATTACACCCATGTAAGGTATTTTTAACACTGGGGTTTTGAAG GTGTTATCTTTTCTGGTATCCTATCACTACATGTTAAAATTGAAGGAGAAAATATTATTGAAACTAAAGTAATTGCAGGGACACATTAAA CCAAAGGGGTGAACAAAAGAGGTTTAAAGTTTGTATCTAGAAATGAAAAATAAGAATCATTGGTAAGACTAGTACCGATTATTGGCAATT GGTAATTGATAATTGGTAAGAGTAGTACCAAATAATGGGCATTTTTCTTAAAATACATACCTCTACCCCAAACCCCAAATGTTAATTTAG AATCCTGAAACAGGCAAGTCAGGCTCTGACTCTTTTGTTTAAGGAAATGTAATACTGTGTCAACTAAACTGGCATTAGGTTCTTAGTGGA GTGTGTGTTTGTGTGTGTGTGTGTGTGTTTTGTGTAGAGGTATGTTTGTGATGAAAGGTTTTGCACTGTTGCATAAAGAAGTTTGATTTT GTGATTTTTAAAATGATATTCATTTGGAGACTTTTTAAGGTAATTTAAAAGATGTATAATTTCCGTGTGTTTAATGAAATCTGTTGTCGA >In-frame_PCMTD1_ENST00000360540_chr8_52758221_-_SLCO5A1_ENST00000524945_chr8_70674110_-_2918nt GGCGGCTCCGGAGTCCGGGAGGCTCTGGCTGCTCCAGTCGCGGGTCCGGGCCCCGCCTCTCCACTCGGCGGTGGCGTCCGTGTTGTTATT GTGGTGGTAGCGGCGTCTGGCTGCTGCGGACCCCGCCGAGTCCTAGCGCCTGGCCTGCGCGCCGCTGCCCGCGCCACAGCCCCATCACTG AGAAGAATTTTTTCACTGTATAGTTGCCTCTGCACTTAAAGCAGGCTTGGTCCATGAATCCCATGACAAGAGCTTTGAGGACATGAGGAG CATTCTTTGTTCAAACATACTGTGTTTTCCTTTGGATCACTGGATTAATTTATTTTTGGAAATCAAGTGCAATATTGGAAGCCATTTCTA CTAATTTTATTTCACTTTTAAATTTATGATTTGATTTGAATACTATCATGGGAGGAGCTGTGAGTGCTGGGGAAGATAATGATGACTTAA TTGATAATTTAAAAGAAGCTCAGTATATTCGTACTGAAAGAGTGGAGCAAGCCTTCAGAGCGATTGATCGTGGAGATTACTATTTGGAAG GCTACAGAGACAATGCTTACAAAGACTTAGCCTGGAAGCATGGAAACATCCACTTGTCAGCACCTTGCATTTATTCTGAAGTTATGGAAG CATTGAAACTTCAACCAGGATTGTCTTTTCTTAACCTGGGAAGTGGAACCGGATATTTAAGTACAATGGTGGGCTTAATTTTAGGTCCTT TTGGAATAAATCATGGGATTGAGCTTCATTCAGATGTGGTGGAATATGCCAAGGAAAAACTGGAGAGCTTCATCAAAAATAGTGATAGCT TTGATAACCATCATGTATGTCATGGGAGCACTTGGCCCTGCAGTGGGATATTTATTAGGTGGACTTCTTATTGGTTTTTATGTTGATCCC AGAAATCCTGTTCACCTTGACCAGAATGACCCTCGTTTCATTGGAAACTGGTGGAGTGGATTCCTCCTTTGTGCCATTGCAATGTTTCTT GTGATATTCCCAATGTTTACTTTCCCAAAAAAGCTTCCACCTCGACACAAGAAAAAGAAAAAGAAAAAATTTTCTGTTGATGCTGTTAGT GATGACGATGTTCTGAAGGAGAAATCAAACAACAGTGAACAAGCGGACAAAAAAGTTTCTTCGATGGGATTTGGAAAGGATGTCAGAGAC CTACCAAGAGCAGCTGTCAGGATCTTAAGCAACATGACATTCCTTTTTGTGAGTTTGTCATACACAGCTGAGAGTGCCATTGTAACTGCT TTCATTACCTTCATTCCCAAGTTCATCGAGTCACAGTTTGGTATCCCAGCCTCCAATGCCAGCATCTACACTGGGGTTATTATCGTCCCC AGTGCTGGTGTTGGTATTGTCCTCGGAGGCTACATTATAAAAAAATTGAAACTTGGTGCCAGAGAATCTGCAAAACTAGCAATGATCTGC AGTGGTGTGTCTTTACTATGTTTTTCAACCCTATTTATTGTTGGATGTGAAAGCATTAATCTAGGGGGCATAAACATCCCTTATACAACA GGACCTTCTCTCACCATGCCCCATAGGAATCTGACAGGAAGCTGCAACGTTAATTGTGGTTGTAAAATACACGAGTATGAGCCAGTCTGT GGATCAGATGGAATTACATACTTTAACCCTTGTCTGGCTGGCTGTGTTAATAGTGGTAATCTTAGCACTGGGATACGGAATTATACAGAA TGCACCTGTGTCCAAAGTCGCCAAGTGATCACTCCACCCACCGTGGGACAGCGAAGTCAGCTCCGTGTGGTTATTGTCAAGACTTATCTC AATGAGAACGGCTATGCTGTGTCTGGGAAATGTAAACGGACCTGCAATACTCTTATCCCATTCTTAGTTTTTCTTTTCATAGTCACCTTC ATCACAGCATGTGCCCAACCATCAGCTATCATAGTAACACTCAGCATACATTCCTACTCCAATCTACTTTGGAGCAGTCATTGACACCAC CTGCATGCTCTGGCAACAGGAATGTGGTGTGCAGGGTTCTTGCTGGGAGTACAACGTGACGTCGTTTCGTTTTGTGTATTTTGGTTTGGC TGCCGGCCTCAAATTCGTTGGGTTTATTTTTATTTTTCTGGCCTGGTACTCCATAAAATACAAGGAGGATGGACTGCAGAGGCGGAGGCA GAGAGAATTTCCCCTGAGCACCGTGAGTGAGAGAGTGGGACACCCCGACAATGCCCGGACTAGATCTTGCCCAGCTTTCAGCACCCAGGG AGAATTCCACGAAGAGACTGGCCTGCAAAAAGGGATCCAGTGCGCAGCACAGACCTACCCGGGGCCCTTCCCAGAAGCAATAAGTTCCTC TGCGGACCCGGGGCTGGAAGAGAGCCCCGCTGCCTTGGAGCCGCCCTCCTGAAGCTTGAAAATGGAAGAATTTAGTTTTGTTGGTTGAAT TGAAAATGGCGACTTGAGAAACAACTGTGCCTTCTTTTCTTTCTTTCTTTTTTTTAACCTCTACAGACACAATCCTCAAACCAACAAAAC TCAGTATACACAGCCGCTATTCATTGAGGGCTGGATACCTCAACAAGACTGAGAGCCTTTCCCCGCTTCTCTCCAAGAAGGAGACGTTCA GCTAGATTTGTTCCCATTTCCGTTGTGTTAATTCAAAGCTCATGCTCCCCTACGGTACAGGCTGAGGTACACGGTTAGCAAAACCATGGG AAGGGGAATGGCGGTGCATATCATTAACTAACACTCCAAACAAAGGTGAGCTTGCCCAGGACTTGGCATTTCCAAATCAAAGTTTTTAGA TATGAACACCTACTGTGAGTTCTGCTACAAAGCACAAATGAATTTGTCTCAACTATGCAATTTGATTGGAAAAATGTATGTGCAGCATGT >In-frame_PCMTD1_ENST00000360540_chr8_52758221_-_SLCO5A1_ENST00000530307_chr8_70674110_-_2498nt GGCGGCTCCGGAGTCCGGGAGGCTCTGGCTGCTCCAGTCGCGGGTCCGGGCCCCGCCTCTCCACTCGGCGGTGGCGTCCGTGTTGTTATT GTGGTGGTAGCGGCGTCTGGCTGCTGCGGACCCCGCCGAGTCCTAGCGCCTGGCCTGCGCGCCGCTGCCCGCGCCACAGCCCCATCACTG AGAAGAATTTTTTCACTGTATAGTTGCCTCTGCACTTAAAGCAGGCTTGGTCCATGAATCCCATGACAAGAGCTTTGAGGACATGAGGAG CATTCTTTGTTCAAACATACTGTGTTTTCCTTTGGATCACTGGATTAATTTATTTTTGGAAATCAAGTGCAATATTGGAAGCCATTTCTA CTAATTTTATTTCACTTTTAAATTTATGATTTGATTTGAATACTATCATGGGAGGAGCTGTGAGTGCTGGGGAAGATAATGATGACTTAA TTGATAATTTAAAAGAAGCTCAGTATATTCGTACTGAAAGAGTGGAGCAAGCCTTCAGAGCGATTGATCGTGGAGATTACTATTTGGAAG GCTACAGAGACAATGCTTACAAAGACTTAGCCTGGAAGCATGGAAACATCCACTTGTCAGCACCTTGCATTTATTCTGAAGTTATGGAAG CATTGAAACTTCAACCAGGATTGTCTTTTCTTAACCTGGGAAGTGGAACCGGATATTTAAGTACAATGGTGGGCTTAATTTTAGGTCCTT TTGGAATAAATCATGGGATTGAGCTTCATTCAGATGTGGTGGAATATGCCAAGGAAAAACTGGAGAGCTTCATCAAAAATAGTGATAGCT TTGATAACCATCATGTATGTCATGGGAGCACTTGGCCCTGCAGTGGGATATTTATTAGGTGGACTTCTTATTGGTTTTTATGTTGATCCC AGAAATCCTGTTCACCTTGACCAGAATGACCCTCGTTTCATTGGAAACTGGTGGAGTGGATTCCTCCTTTGTGCCATTGCAATGTTTCTT GTGATATTCCCAATGTTTACTTTCCCAAAAAAGCTTCCACCTCGACACAAGAAAAAGAAAAAGAAAAAATTTTCTGTTGATGCTGTTAGT GATGACGATGTTCTGAAGGAGAAATCAAACAACAGTGAACAAGCGGACAAAAAAGTTTCTTCGATGGGATTTGGAAAGGATGTCAGAGGG GTTATTATCGTCCCCAGTGCTGGTGTTGGTATTGTCCTCGGAGGCTACATTATAAAAAAATTGAAACTTGGTGCCAGAGAATCTGCAAAA CTAGCAATGATCTGCAGTGGTGTGTCTTTACTATGTTTTTCAACCCTATTTATTGTTGGATGTGAAAGCATTAATCTAGGGGGCATAAAC ATCCCTTATACAACAGGACCTTCTCTCACCATGCCCCATAGGAATCTGACAGGAAGCTGCAACGTTAATTGTGGTTGTAAAATACACGAG TATGAGCCAGTCTGTGGATCAGATGGAATTACATACTTTAACCCTTGTCTGGCTGGCTGTGTTAATAGTGGTAATCTTAGCACTGGGATA CGGAATTATACAGAATGCACCTGTGTCCAAAGTCGCCAAGTGATCACTCCACCCACCGTGGGACAGCGAAGTCAGCTCCGTGTGGTTATT GTCAAGACTTATCTCAATGAGAACGGCTATGCTGTGTCTGGGAAATGTAAACGGACCTGCAATACTCTTATCCCATTCTTAGTTTTTCTT TTCATAGTCACCTTCATCACAGCATGTGCCCAACCATCAGCTATCATAGTAACACTCAGGTCCGTAGAAGATGAGGAGAGACCTTTTGCA CTGGGAATGCAGTTTGTTTTGTTGCGAACACTTGCATACATTCCTACTCCAATCTACTTTGGAGCAGTCATTGACACCACCTGCATGCTC TGGCAACAGGAATGTGGTGTGCAGGGTTCTTGCTGGGAGTACAACGTGACGTCGTTTCGTTTTGTGTATTTTGGTTTGGCTGCCGGCCTC AAATTCGTTGGGTTTATTTTTATTTTTCTGGCCTGGTACTCCATAAAATACAAGGAGGATGGACTGCAGAGGCGGAGGCAGAGAGAATTT CCCCTGAGCACCGTGAGTGAGAGAGTGGGACACCCCGACAATGCCCGGACTAGATCTTGCCCAGCTTTCAGCACCCAGGGAGAATTCCAC GAAGAGACTGGCCTGCAAAAAGGGATCCAGTGCGCAGCACAGACCTACCCGGGGCCCTTCCCAGAAGCAATAAGTTCCTCTGCGGACCCG GGGCTGGAAGAGAGCCCCGCTGCCTTGGAGCCGCCCTCCTGAAGCTTGAAAATGGAAGAATTTAGTTTTGTTGGTTGAATTGAAAATGGC GACTTGAGAAACAACTGTGCCTTCTTTTCTTTCTTTCTTTTTTTTAACCTCTACAGACACAATCCTCAAACCAACAAAACTCAGTATACA |
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FusionGenePPI for PCMTD1_SLCO5A1 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
PCMTD1 | ELAVL1, CUL5, MRPS11, NANOG, RPS14, SEPT3, UBC | SLCO5A1 | TRIM25 |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for PCMTD1_SLCO5A1 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for PCMTD1_SLCO5A1 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |