![]() |
||||||
|
![]() | |
![]() | |
![]() | |
![]() | |
![]() | |
![]() |
Fusion gene ID: 26251 |
FusionGeneSummary for PCM1_PCM1 |
![]() |
Fusion gene information | Fusion gene name: PCM1_PCM1 | Fusion gene ID: 26251 | Hgene | Tgene | Gene symbol | PCM1 | PCM1 | Gene ID | 5108 | 5108 |
Gene name | pericentriolar material 1 | pericentriolar material 1 | |
Synonyms | PTC4|RET/PCM-1 | PTC4|RET/PCM-1 | |
Cytomap | 8p22 | 8p22 | |
Type of gene | protein-coding | protein-coding | |
Description | pericentriolar material 1 proteinPCM-1hPCM-1pericentriolar material 1, PCM1 | pericentriolar material 1 proteinPCM-1hPCM-1pericentriolar material 1, PCM1 | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | Q15154 | Q15154 | |
Ensembl transtripts involved in fusion gene | ENST00000325083, ENST00000519253, ENST00000524226, ENST00000518537, ENST00000518936, ENST00000327578, | ENST00000325083, ENST00000519253, ENST00000524226, ENST00000518537, ENST00000518936, ENST00000327578, | |
Fusion gene scores | * DoF score | 8 X 7 X 5=280 | 5 X 5 X 3=75 |
# samples | 8 | 5 | |
** MAII score | log2(8/280*10)=-1.8073549220576 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(5/75*10)=-0.584962500721156 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: PCM1 [Title/Abstract] AND PCM1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
![]() |
Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | CD240310 | PCM1 | chr8 | 17885252 | + | PCM1 | chr8 | 17883089 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
3UTR-3CDS | ENST00000325083 | ENST00000325083 | PCM1 | chr8 | 17885252 | + | PCM1 | chr8 | 17883089 | - |
3UTR-3CDS | ENST00000325083 | ENST00000519253 | PCM1 | chr8 | 17885252 | + | PCM1 | chr8 | 17883089 | - |
3UTR-3CDS | ENST00000325083 | ENST00000524226 | PCM1 | chr8 | 17885252 | + | PCM1 | chr8 | 17883089 | - |
3UTR-intron | ENST00000325083 | ENST00000518537 | PCM1 | chr8 | 17885252 | + | PCM1 | chr8 | 17883089 | - |
3UTR-intron | ENST00000325083 | ENST00000518936 | PCM1 | chr8 | 17885252 | + | PCM1 | chr8 | 17883089 | - |
3UTR-intron | ENST00000325083 | ENST00000327578 | PCM1 | chr8 | 17885252 | + | PCM1 | chr8 | 17883089 | - |
3UTR-3CDS | ENST00000519253 | ENST00000325083 | PCM1 | chr8 | 17885252 | + | PCM1 | chr8 | 17883089 | - |
3UTR-3CDS | ENST00000519253 | ENST00000519253 | PCM1 | chr8 | 17885252 | + | PCM1 | chr8 | 17883089 | - |
3UTR-3CDS | ENST00000519253 | ENST00000524226 | PCM1 | chr8 | 17885252 | + | PCM1 | chr8 | 17883089 | - |
3UTR-intron | ENST00000519253 | ENST00000518537 | PCM1 | chr8 | 17885252 | + | PCM1 | chr8 | 17883089 | - |
3UTR-intron | ENST00000519253 | ENST00000518936 | PCM1 | chr8 | 17885252 | + | PCM1 | chr8 | 17883089 | - |
3UTR-intron | ENST00000519253 | ENST00000327578 | PCM1 | chr8 | 17885252 | + | PCM1 | chr8 | 17883089 | - |
3UTR-3CDS | ENST00000524226 | ENST00000325083 | PCM1 | chr8 | 17885252 | + | PCM1 | chr8 | 17883089 | - |
3UTR-3CDS | ENST00000524226 | ENST00000519253 | PCM1 | chr8 | 17885252 | + | PCM1 | chr8 | 17883089 | - |
3UTR-3CDS | ENST00000524226 | ENST00000524226 | PCM1 | chr8 | 17885252 | + | PCM1 | chr8 | 17883089 | - |
3UTR-intron | ENST00000524226 | ENST00000518537 | PCM1 | chr8 | 17885252 | + | PCM1 | chr8 | 17883089 | - |
3UTR-intron | ENST00000524226 | ENST00000518936 | PCM1 | chr8 | 17885252 | + | PCM1 | chr8 | 17883089 | - |
3UTR-intron | ENST00000524226 | ENST00000327578 | PCM1 | chr8 | 17885252 | + | PCM1 | chr8 | 17883089 | - |
intron-3CDS | ENST00000518537 | ENST00000325083 | PCM1 | chr8 | 17885252 | + | PCM1 | chr8 | 17883089 | - |
intron-3CDS | ENST00000518537 | ENST00000519253 | PCM1 | chr8 | 17885252 | + | PCM1 | chr8 | 17883089 | - |
intron-3CDS | ENST00000518537 | ENST00000524226 | PCM1 | chr8 | 17885252 | + | PCM1 | chr8 | 17883089 | - |
intron-intron | ENST00000518537 | ENST00000518537 | PCM1 | chr8 | 17885252 | + | PCM1 | chr8 | 17883089 | - |
intron-intron | ENST00000518537 | ENST00000518936 | PCM1 | chr8 | 17885252 | + | PCM1 | chr8 | 17883089 | - |
intron-intron | ENST00000518537 | ENST00000327578 | PCM1 | chr8 | 17885252 | + | PCM1 | chr8 | 17883089 | - |
intron-3CDS | ENST00000518936 | ENST00000325083 | PCM1 | chr8 | 17885252 | + | PCM1 | chr8 | 17883089 | - |
intron-3CDS | ENST00000518936 | ENST00000519253 | PCM1 | chr8 | 17885252 | + | PCM1 | chr8 | 17883089 | - |
intron-3CDS | ENST00000518936 | ENST00000524226 | PCM1 | chr8 | 17885252 | + | PCM1 | chr8 | 17883089 | - |
intron-intron | ENST00000518936 | ENST00000518537 | PCM1 | chr8 | 17885252 | + | PCM1 | chr8 | 17883089 | - |
intron-intron | ENST00000518936 | ENST00000518936 | PCM1 | chr8 | 17885252 | + | PCM1 | chr8 | 17883089 | - |
intron-intron | ENST00000518936 | ENST00000327578 | PCM1 | chr8 | 17885252 | + | PCM1 | chr8 | 17883089 | - |
Frame-shift | ENST00000327578 | ENST00000325083 | PCM1 | chr8 | 17885252 | + | PCM1 | chr8 | 17883089 | - |
Frame-shift | ENST00000327578 | ENST00000519253 | PCM1 | chr8 | 17885252 | + | PCM1 | chr8 | 17883089 | - |
Frame-shift | ENST00000327578 | ENST00000524226 | PCM1 | chr8 | 17885252 | + | PCM1 | chr8 | 17883089 | - |
5CDS-intron | ENST00000327578 | ENST00000518537 | PCM1 | chr8 | 17885252 | + | PCM1 | chr8 | 17883089 | - |
5CDS-intron | ENST00000327578 | ENST00000518936 | PCM1 | chr8 | 17885252 | + | PCM1 | chr8 | 17883089 | - |
5CDS-intron | ENST00000327578 | ENST00000327578 | PCM1 | chr8 | 17885252 | + | PCM1 | chr8 | 17883089 | - |
Top |
FusionProtFeatures for PCM1_PCM1 |
![]() |
Hgene | Tgene |
PCM1 | PCM1 |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Top |
FusionGeneSequence for PCM1_PCM1 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
Top |
FusionGenePPI for PCM1_PCM1 |
![]() |
![]() |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
RelatedDrugs for PCM1_PCM1 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
RelatedDiseases for PCM1_PCM1 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | PCM1 | C0036341 | Schizophrenia | 1 | CTD_human |
Tgene | PCM1 | C0036341 | Schizophrenia | 1 | CTD_human |