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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 26228

FusionGeneSummary for PCGF3_SPATA24

check button Fusion gene summary
Fusion gene informationFusion gene name: PCGF3_SPATA24
Fusion gene ID: 26228
HgeneTgene
Gene symbol

PCGF3

SPATA24

Gene ID

10336

202051

Gene namepolycomb group ring finger 3spermatogenesis associated 24
SynonymsDONG1|RNF3|RNF3ACCDC161|T6441
Cytomap

4p16.3

5q31.2

Type of geneprotein-codingprotein-coding
Descriptionpolycomb group RING finger protein 3RING finger protein 3Aring finger protein 3spermatogenesis-associated protein 24coiled-coil domain containing 161testis protein T6441 homolog
Modification date2018052320180519
UniProtAcc

Q3KNV8

Q86W54

Ensembl transtripts involved in fusion geneENST00000362003, ENST00000400151, 
ENST00000482726, ENST00000470161, 
ENST00000521023, ENST00000505655, 
ENST00000509959, ENST00000451821, 
ENST00000507779, 
Fusion gene scores* DoF score11 X 7 X 7=5391 X 1 X 1=1
# samples 111
** MAII scorelog2(11/539*10)=-2.29278174922785
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(1/1*10)=3.32192809488736
Context

PubMed: PCGF3 [Title/Abstract] AND SPATA24 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGARVBLCATCGA-XF-A8HG-01APCGF3chr4

699759

+SPATA24chr5

138738382

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5UTR-intronENST00000362003ENST00000509959PCGF3chr4

699759

+SPATA24chr5

138738382

-
5UTR-intronENST00000362003ENST00000451821PCGF3chr4

699759

+SPATA24chr5

138738382

-
5UTR-intronENST00000362003ENST00000507779PCGF3chr4

699759

+SPATA24chr5

138738382

-
5UTR-intronENST00000400151ENST00000509959PCGF3chr4

699759

+SPATA24chr5

138738382

-
5UTR-intronENST00000400151ENST00000451821PCGF3chr4

699759

+SPATA24chr5

138738382

-
5UTR-intronENST00000400151ENST00000507779PCGF3chr4

699759

+SPATA24chr5

138738382

-
3UTR-intronENST00000482726ENST00000509959PCGF3chr4

699759

+SPATA24chr5

138738382

-
3UTR-intronENST00000482726ENST00000451821PCGF3chr4

699759

+SPATA24chr5

138738382

-
3UTR-intronENST00000482726ENST00000507779PCGF3chr4

699759

+SPATA24chr5

138738382

-
5UTR-intronENST00000470161ENST00000509959PCGF3chr4

699759

+SPATA24chr5

138738382

-
5UTR-intronENST00000470161ENST00000451821PCGF3chr4

699759

+SPATA24chr5

138738382

-
5UTR-intronENST00000470161ENST00000507779PCGF3chr4

699759

+SPATA24chr5

138738382

-
5UTR-intronENST00000521023ENST00000509959PCGF3chr4

699759

+SPATA24chr5

138738382

-
5UTR-intronENST00000521023ENST00000451821PCGF3chr4

699759

+SPATA24chr5

138738382

-
5UTR-intronENST00000521023ENST00000507779PCGF3chr4

699759

+SPATA24chr5

138738382

-
intron-intronENST00000505655ENST00000509959PCGF3chr4

699759

+SPATA24chr5

138738382

-
intron-intronENST00000505655ENST00000451821PCGF3chr4

699759

+SPATA24chr5

138738382

-
intron-intronENST00000505655ENST00000507779PCGF3chr4

699759

+SPATA24chr5

138738382

-

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FusionProtFeatures for PCGF3_SPATA24


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
PCGF3

Q3KNV8

SPATA24

Q86W54

Component of a Polycomb group (PcG) multiprotein PRC1-like complex, a complex class required to maintain thetranscriptionally repressive state of many genes, including Hoxgenes, throughout development. PcG PRC1 complex acts via chromatinremodeling and modification of histones; it mediatesmonoubiquitination of histone H2A 'Lys-119', rendering chromatinheritably changed in its expressibility. Within the PRC1-likecomplex, regulates RNF2 ubiquitin ligase activity(PubMed:26151332). Plays a redundant role with PCGF5 as part of aPRC1-like complex that mediates monoubiquitination of histone H2A'Lys-119' on the X chromosome and is required for normal silencingof one copy of the X chromosome in XX females (By similarity).{ECO:0000250|UniProtKB:Q8BTQ0, ECO:0000269|PubMed:26151332}. Binds DNA with high affinity but does not bind to TATAboxes. Synergises with GMNN and TBP in activation of TATA box-containing promoters and with GMNN and TBPL1 in activation of theNF1 TATA-less promoter. May play a role in cytoplasm movement andremoval during spermiogenesis (By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for PCGF3_SPATA24


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for PCGF3_SPATA24


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
PCGF3RNF2, RING1, RYBP, YAF2, CBX4, MGA, BCORL1, KDM2B, USP7, AUTS2, FBRS, FBRSL1, CSNK2A1, CSNK2A2, CSNK2B, HSP90AA1, CBX8, CBX7, CBX6, BCOR, BMI1, TRIM9, DZIP3, UBE2C, PHC2, PCGF3, UBE2D3, DCAF7, UBE2E3, KIAA0430, HELZ, CREBBP, EIF4ENIF1, ARID3A, SOWAHA, PAN2, NISCH, RB1, TRIM25SPATA24IQCB1, CAMK2D, FLOT2, PTAFR, EHD2, KDM1A, SUV39H1, KRT31, CALCOCO2, MID2, CEP72, LZTS2, KRTAP4-2, KRT40, PCM1, CEP162, CEP128, CEP135, CEP63, ODF2, LCA5, DCAF17, STXBP2, THNSL1, TRIM9, CDR2, GRPEL1, GGPS1, BTBD1, ISCA1, UBR1, DHPS, RBM26, DCAF5


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for PCGF3_SPATA24


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for PCGF3_SPATA24


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource