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Fusion gene ID: 2610 |
FusionGeneSummary for ARID1A_NUDC |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: ARID1A_NUDC | Fusion gene ID: 2610 | Hgene | Tgene | Gene symbol | ARID1A | NUDC | Gene ID | 8289 | 10726 |
| Gene name | AT-rich interaction domain 1A | nuclear distribution C, dynein complex regulator | |
| Synonyms | B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1 | HNUDC|MNUDC|NPD011 | |
| Cytomap | 1p36.11 | 1p36.11 | |
| Type of gene | protein-coding | protein-coding | |
| Description | AT-rich interactive domain-containing protein 1AARID domain-containing protein 1AAT rich interactive domain 1A (SWI-like)BRG1-associated factor 250aOSA1 nuclear proteinSWI-like proteinSWI/SNF complex protein p270SWI/SNF-related, matrix-associated, | nuclear migration protein nudCnuclear distribution C homolognuclear distribution gene C homolognuclear distribution protein C homolognudC nuclear distribution protein | |
| Modification date | 20180519 | 20180523 | |
| UniProtAcc | O14497 | Q9Y266 | |
| Ensembl transtripts involved in fusion gene | ENST00000324856, ENST00000457599, ENST00000374152, ENST00000540690, | ENST00000321265, ENST00000484772, | |
| Fusion gene scores | * DoF score | 21 X 13 X 13=3549 | 4 X 5 X 5=100 |
| # samples | 31 | 6 | |
| ** MAII score | log2(31/3549*10)=-3.51707245378671 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(6/100*10)=-0.736965594166206 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: ARID1A [Title/Abstract] AND NUDC [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | Tumor suppressor gene involved fusion gene, in-frame but not retained their domain. | ||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | ARID1A | GO:0006337 | nucleosome disassembly | 8895581 |
| Hgene | ARID1A | GO:0006338 | chromatin remodeling | 11726552 |
| Hgene | ARID1A | GO:0030520 | intracellular estrogen receptor signaling pathway | 12200431 |
| Hgene | ARID1A | GO:0030521 | androgen receptor signaling pathway | 12200431 |
| Hgene | ARID1A | GO:0042921 | glucocorticoid receptor signaling pathway | 12200431 |
| Hgene | ARID1A | GO:0045893 | positive regulation of transcription, DNA-templated | 12200431 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | LD | BRCA | TCGA-AR-A1AI-01A | ARID1A | chr1 | 27088810 | + | NUDC | chr1 | 27237619 | + |
| TCGA | LD | OV | TCGA-24-1928-01A | ARID1A | chr1 | 27059283 | + | NUDC | chr1 | 27267948 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 5CDS-intron | ENST00000324856 | ENST00000321265 | ARID1A | chr1 | 27088810 | + | NUDC | chr1 | 27237619 | + |
| 5CDS-intron | ENST00000324856 | ENST00000484772 | ARID1A | chr1 | 27088810 | + | NUDC | chr1 | 27237619 | + |
| 5CDS-intron | ENST00000457599 | ENST00000321265 | ARID1A | chr1 | 27088810 | + | NUDC | chr1 | 27237619 | + |
| 5CDS-intron | ENST00000457599 | ENST00000484772 | ARID1A | chr1 | 27088810 | + | NUDC | chr1 | 27237619 | + |
| 5CDS-intron | ENST00000374152 | ENST00000321265 | ARID1A | chr1 | 27088810 | + | NUDC | chr1 | 27237619 | + |
| 5CDS-intron | ENST00000374152 | ENST00000484772 | ARID1A | chr1 | 27088810 | + | NUDC | chr1 | 27237619 | + |
| intron-intron | ENST00000540690 | ENST00000321265 | ARID1A | chr1 | 27088810 | + | NUDC | chr1 | 27237619 | + |
| intron-intron | ENST00000540690 | ENST00000484772 | ARID1A | chr1 | 27088810 | + | NUDC | chr1 | 27237619 | + |
| In-frame | ENST00000324856 | ENST00000321265 | ARID1A | chr1 | 27059283 | + | NUDC | chr1 | 27267948 | + |
| 5CDS-intron | ENST00000324856 | ENST00000484772 | ARID1A | chr1 | 27059283 | + | NUDC | chr1 | 27267948 | + |
| In-frame | ENST00000457599 | ENST00000321265 | ARID1A | chr1 | 27059283 | + | NUDC | chr1 | 27267948 | + |
| 5CDS-intron | ENST00000457599 | ENST00000484772 | ARID1A | chr1 | 27059283 | + | NUDC | chr1 | 27267948 | + |
| In-frame | ENST00000374152 | ENST00000321265 | ARID1A | chr1 | 27059283 | + | NUDC | chr1 | 27267948 | + |
| 5CDS-intron | ENST00000374152 | ENST00000484772 | ARID1A | chr1 | 27059283 | + | NUDC | chr1 | 27267948 | + |
| intron-3CDS | ENST00000540690 | ENST00000321265 | ARID1A | chr1 | 27059283 | + | NUDC | chr1 | 27267948 | + |
| intron-intron | ENST00000540690 | ENST00000484772 | ARID1A | chr1 | 27059283 | + | NUDC | chr1 | 27267948 | + |
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FusionProtFeatures for ARID1A_NUDC |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| ARID1A | NUDC |
| Plays a role in neurogenesis and neuronal migration (Bysimilarity). Necessary for correct formation of mitotic spindlesand chromosome separation during mitosis. Necessary forcytokinesis and cell proliferation. {ECO:0000250,ECO:0000269|PubMed:12679384, ECO:0000269|PubMed:12852857}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | ARID1A | chr1:27059283 | chr1:27267948 | ENST00000324856 | + | 4 | 20 | 479_482 | 640 | 2286 | Compositional bias | Note=Poly-Gln |
| Hgene | ARID1A | chr1:27059283 | chr1:27267948 | ENST00000324856 | + | 4 | 20 | 561_567 | 640 | 2286 | Compositional bias | Note=Poly-Gln |
| Hgene | ARID1A | chr1:27059283 | chr1:27267948 | ENST00000457599 | + | 4 | 20 | 479_482 | 640 | 2069 | Compositional bias | Note=Poly-Gln |
| Hgene | ARID1A | chr1:27059283 | chr1:27267948 | ENST00000457599 | + | 4 | 20 | 561_567 | 640 | 2069 | Compositional bias | Note=Poly-Gln |
| Hgene | ARID1A | chr1:27059283 | chr1:27267948 | ENST00000324856 | + | 4 | 20 | 295_299 | 640 | 2286 | Motif | Note=LXXLL |
| Hgene | ARID1A | chr1:27059283 | chr1:27267948 | ENST00000457599 | + | 4 | 20 | 295_299 | 640 | 2069 | Motif | Note=LXXLL |
| Tgene | >NUDC | chr1:27059283 | chr1:27267948 | ENST00000321265 | + | 1 | 9 | 60_134 | 53 | 332 | Coiled coil | Ontology_term=ECO:0000255 |
| Tgene | >NUDC | chr1:27059283 | chr1:27267948 | ENST00000321265 | + | 1 | 9 | 167_258 | 53 | 332 | Domain | CS |
| Tgene | >NUDC | chr1:27059283 | chr1:27267948 | ENST00000321265 | + | 1 | 9 | 68_74 | 53 | 332 | Motif | Nuclear localization signal |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | >ARID1A | chr1:27059283 | chr1:27267948 | ENST00000324856 | + | 4 | 20 | 1327_1404 | 640 | 2286 | Compositional bias | Note=Gln-rich |
| Hgene | >ARID1A | chr1:27059283 | chr1:27267948 | ENST00000324856 | + | 4 | 20 | 998_1001 | 640 | 2286 | Compositional bias | Note=Poly-Ser |
| Hgene | >ARID1A | chr1:27059283 | chr1:27267948 | ENST00000374152 | + | 3 | 19 | 1327_1404 | 257 | 1903 | Compositional bias | Note=Gln-rich |
| Hgene | >ARID1A | chr1:27059283 | chr1:27267948 | ENST00000374152 | + | 3 | 19 | 479_482 | 257 | 1903 | Compositional bias | Note=Poly-Gln |
| Hgene | >ARID1A | chr1:27059283 | chr1:27267948 | ENST00000374152 | + | 3 | 19 | 561_567 | 257 | 1903 | Compositional bias | Note=Poly-Gln |
| Hgene | >ARID1A | chr1:27059283 | chr1:27267948 | ENST00000374152 | + | 3 | 19 | 998_1001 | 257 | 1903 | Compositional bias | Note=Poly-Ser |
| Hgene | >ARID1A | chr1:27059283 | chr1:27267948 | ENST00000457599 | + | 4 | 20 | 1327_1404 | 640 | 2069 | Compositional bias | Note=Gln-rich |
| Hgene | >ARID1A | chr1:27059283 | chr1:27267948 | ENST00000457599 | + | 4 | 20 | 998_1001 | 640 | 2069 | Compositional bias | Note=Poly-Ser |
| Hgene | >ARID1A | chr1:27059283 | chr1:27267948 | ENST00000324856 | + | 4 | 20 | 1017_1108 | 640 | 2286 | Domain | ARID |
| Hgene | >ARID1A | chr1:27059283 | chr1:27267948 | ENST00000374152 | + | 3 | 19 | 1017_1108 | 257 | 1903 | Domain | ARID |
| Hgene | >ARID1A | chr1:27059283 | chr1:27267948 | ENST00000457599 | + | 4 | 20 | 1017_1108 | 640 | 2069 | Domain | ARID |
| Hgene | >ARID1A | chr1:27059283 | chr1:27267948 | ENST00000324856 | + | 4 | 20 | 1368_1387 | 640 | 2286 | Motif | Nuclear localization signal |
| Hgene | >ARID1A | chr1:27059283 | chr1:27267948 | ENST00000324856 | + | 4 | 20 | 1709_1713 | 640 | 2286 | Motif | Note=LXXLL |
| Hgene | >ARID1A | chr1:27059283 | chr1:27267948 | ENST00000324856 | + | 4 | 20 | 1967_1971 | 640 | 2286 | Motif | Note=LXXLL |
| Hgene | >ARID1A | chr1:27059283 | chr1:27267948 | ENST00000324856 | + | 4 | 20 | 2085_2089 | 640 | 2286 | Motif | Note=LXXLL |
| Hgene | >ARID1A | chr1:27059283 | chr1:27267948 | ENST00000374152 | + | 3 | 19 | 1368_1387 | 257 | 1903 | Motif | Nuclear localization signal |
| Hgene | >ARID1A | chr1:27059283 | chr1:27267948 | ENST00000374152 | + | 3 | 19 | 1709_1713 | 257 | 1903 | Motif | Note=LXXLL |
| Hgene | >ARID1A | chr1:27059283 | chr1:27267948 | ENST00000374152 | + | 3 | 19 | 1967_1971 | 257 | 1903 | Motif | Note=LXXLL |
| Hgene | >ARID1A | chr1:27059283 | chr1:27267948 | ENST00000374152 | + | 3 | 19 | 2085_2089 | 257 | 1903 | Motif | Note=LXXLL |
| Hgene | >ARID1A | chr1:27059283 | chr1:27267948 | ENST00000374152 | + | 3 | 19 | 295_299 | 257 | 1903 | Motif | Note=LXXLL |
| Hgene | >ARID1A | chr1:27059283 | chr1:27267948 | ENST00000457599 | + | 4 | 20 | 1368_1387 | 640 | 2069 | Motif | Nuclear localization signal |
| Hgene | >ARID1A | chr1:27059283 | chr1:27267948 | ENST00000457599 | + | 4 | 20 | 1709_1713 | 640 | 2069 | Motif | Note=LXXLL |
| Hgene | >ARID1A | chr1:27059283 | chr1:27267948 | ENST00000457599 | + | 4 | 20 | 1967_1971 | 640 | 2069 | Motif | Note=LXXLL |
| Hgene | >ARID1A | chr1:27059283 | chr1:27267948 | ENST00000457599 | + | 4 | 20 | 2085_2089 | 640 | 2069 | Motif | Note=LXXLL |
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FusionGeneSequence for ARID1A_NUDC |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| >In-frame_ARID1A_ENST00000324856_chr1_27059283_+_NUDC_ENST00000321265_chr1_27267948_+_919aa MAAQVAPAAASSLGNPPPPPPSELKKAEQQQREEAGGEAAAAAAAERGEMKAAAGQESEGPAVGPPQPLGKELQDGAESNGGGGGGGAGS GGGPGAEPDLKNSNGNAGPRPALNNNLTEPPGGGGGGSSDGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPG LAALQSGGGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPAPAYALSSPRGGTPGSGAAAAAGSKPPPSSSASASSSSSSFAQQR FGAMGGGGPSAAGGGTPQPTATPTLNQLLTSPSSARGYQGYPGGDYSGGPQDGGAGKGPADMASQCWGAAAAAAAAAAASGGAQQRSHHA PMSPGSSGGGGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQQGPPSGPQQGHGYPGQPYGSQTPQRYPMTMQGRAQSAMGGLSYTQQ IPPYGQQGPSGYGQQGQTPYYNQQSPHPQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQPSQPPHQQSPAPYPSQQST TQQHPQSQPPYSQPQAQSPYQQQQPQQPAPSTLSQQAAYPQPQSQQSQQTAYSQQRFPPPQELSQDSFGSQASSAPSMTSSKGGQEDMNL SLQSRPSSLPLITQTFSHHNQLAQKTRREKRARQEAERREKAERAARLAKEAKSETSGPQIKELTDEEAERLQLEIDQKKDAENHEAQLK NGSLDSPGKQDTEEDEEEDEKDKGKLKPNLGNGADLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQPAIIDGELY NEVKVEESSWLIEDGKVVTVHLEKINKMEWWSRLVSSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQEIL >In-frame_ARID1A_ENST00000457599_chr1_27059283_+_NUDC_ENST00000321265_chr1_27267948_+_919aa MAAQVAPAAASSLGNPPPPPPSELKKAEQQQREEAGGEAAAAAAAERGEMKAAAGQESEGPAVGPPQPLGKELQDGAESNGGGGGGGAGS GGGPGAEPDLKNSNGNAGPRPALNNNLTEPPGGGGGGSSDGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPG LAALQSGGGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPAPAYALSSPRGGTPGSGAAAAAGSKPPPSSSASASSSSSSFAQQR FGAMGGGGPSAAGGGTPQPTATPTLNQLLTSPSSARGYQGYPGGDYSGGPQDGGAGKGPADMASQCWGAAAAAAAAAAASGGAQQRSHHA PMSPGSSGGGGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQQGPPSGPQQGHGYPGQPYGSQTPQRYPMTMQGRAQSAMGGLSYTQQ IPPYGQQGPSGYGQQGQTPYYNQQSPHPQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQPSQPPHQQSPAPYPSQQST TQQHPQSQPPYSQPQAQSPYQQQQPQQPAPSTLSQQAAYPQPQSQQSQQTAYSQQRFPPPQELSQDSFGSQASSAPSMTSSKGGQEDMNL SLQSRPSSLPLITQTFSHHNQLAQKTRREKRARQEAERREKAERAARLAKEAKSETSGPQIKELTDEEAERLQLEIDQKKDAENHEAQLK NGSLDSPGKQDTEEDEEEDEKDKGKLKPNLGNGADLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQPAIIDGELY NEVKVEESSWLIEDGKVVTVHLEKINKMEWWSRLVSSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQEIL >In-frame_ARID1A_ENST00000374152_chr1_27059283_+_NUDC_ENST00000321265_chr1_27267948_+_536aa MDQMGKMRPQPYGGTNPYSQQQGPPSGPQQGHGYPGQPYGSQTPQRYPMTMQGRAQSAMGGLSYTQQIPPYGQQGPSGYGQQGQTPYYNQ QSPHPQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQPSQPPHQQSPAPYPSQQSTTQQHPQSQPPYSQPQAQSPYQQQ QPQQPAPSTLSQQAAYPQPQSQQSQQTAYSQQRFPPPQELSQDSFGSQASSAPSMTSSKGGQEDMNLSLQSRPSSLPLITQTFSHHNQLA QKTRREKRARQEAERREKAERAARLAKEAKSETSGPQIKELTDEEAERLQLEIDQKKDAENHEAQLKNGSLDSPGKQDTEEDEEEDEKDK GKLKPNLGNGADLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQPAIIDGELYNEVKVEESSWLIEDGKVVTVHLE |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| >In-frame_ARID1A_ENST00000324856_chr1_27059283_+_NUDC_ENST00000321265_chr1_27267948_+_2757nt ATGGCCGCGCAGGTCGCCCCCGCCGCCGCCAGCAGCCTGGGCAACCCGCCGCCGCCGCCGCCCTCGGAGCTGAAGAAAGCCGAGCAGCAG CAGCGGGAGGAGGCGGGGGGCGAGGCGGCGGCGGCGGCAGCGGCCGAGCGCGGGGAAATGAAGGCAGCCGCCGGGCAGGAAAGCGAGGGC CCCGCCGTGGGGCCGCCGCAGCCGCTGGGAAAGGAGCTGCAGGACGGGGCCGAGAGCAATGGGGGTGGCGGCGGCGGCGGAGCCGGCAGC GGCGGCGGGCCCGGCGCGGAGCCGGACCTGAAGAACTCGAACGGGAACGCGGGCCCTAGGCCCGCCCTGAACAATAACCTCACGGAGCCG CCCGGCGGCGGCGGTGGCGGCAGCAGCGATGGGGTGGGGGCGCCTCCTCACTCAGCCGCGGCCGCCTTGCCGCCCCCAGCCTACGGCTTC GGGCAACCCTACGGCCGGAGCCCGTCTGCCGTCGCCGCCGCCGCGGCCGCCGTCTTCCACCAACAACATGGCGGACAACAAAGCCCTGGC CTGGCAGCGCTGCAGAGCGGCGGCGGCGGGGGCCTGGAGCCCTACGCGGGGCCCCAGCAGAACTCTCACGACCACGGCTTCCCCAACCAC CAGTACAACTCCTACTACCCCAACCGCAGCGCCTACCCCCCGCCCGCCCCGGCCTACGCGCTGAGCTCCCCGAGAGGTGGCACTCCGGGC TCCGGCGCGGCGGCGGCTGCCGGCTCCAAGCCGCCTCCCTCCTCCAGCGCCTCCGCCTCCTCGTCGTCTTCGTCCTTCGCTCAGCAGCGC TTCGGGGCCATGGGGGGAGGCGGCCCCTCCGCGGCCGGCGGGGGAACTCCCCAGCCCACCGCCACCCCCACCCTCAACCAACTGCTCACG TCGCCCAGCTCGGCCCGGGGCTACCAGGGCTACCCCGGGGGCGACTACAGTGGCGGGCCCCAGGACGGGGGCGCCGGCAAGGGCCCGGCG GACATGGCCTCGCAGTGTTGGGGGGCTGCGGCGGCGGCAGCTGCGGCGGCGGCCGCCTCGGGAGGGGCCCAACAAAGGAGCCACCACGCG CCCATGAGCCCCGGGAGCAGCGGCGGCGGGGGGCAGCCGCTCGCCCGGACCCCTCAGCCATCCAGTCCAATGGATCAGATGGGCAAGATG AGACCTCAGCCATATGGCGGGACTAACCCATACTCGCAGCAACAGGGACCTCCGTCAGGACCGCAGCAAGGACATGGGTACCCAGGGCAG CCATACGGGTCCCAGACCCCGCAGCGGTACCCGATGACCATGCAGGGCCGGGCGCAGAGTGCCATGGGCGGCCTCTCTTATACACAGCAG ATTCCTCCTTATGGACAACAAGGCCCCAGCGGGTATGGTCAACAGGGCCAGACTCCATATTACAACCAGCAAAGTCCTCACCCTCAGCAG CAGCAGCCACCCTACTCCCAGCAACCACCGTCCCAGACCCCTCATGCCCAACCTTCGTATCAGCAGCAGCCACAGTCTCAACCACCACAG CTCCAGTCCTCTCAGCCTCCATACTCCCAGCAGCCATCCCAGCCTCCACATCAGCAGTCCCCGGCTCCATACCCCTCCCAGCAGTCGACG ACACAGCAGCACCCCCAGAGCCAGCCCCCCTACTCACAGCCACAGGCTCAGTCTCCTTACCAGCAGCAGCAACCTCAGCAGCCAGCACCC TCGACGCTCTCCCAGCAGGCTGCGTATCCTCAGCCCCAGTCTCAGCAGTCCCAGCAAACTGCCTATTCCCAGCAGCGCTTCCCTCCACCG CAGGAGCTATCTCAAGATTCATTTGGGTCTCAGGCATCCTCAGCCCCCTCAATGACCTCCAGTAAGGGAGGGCAAGAAGATATGAACCTG AGCCTTCAGTCAAGACCCTCCAGCTTGCCTCTTATCACACAGACTTTCAGCCACCACAATCAGCTGGCACAGAAGACCCGGCGGGAGAAG AGAGCCCGGCAGGAGGCCGAGCGGCGGGAGAAGGCGGAGCGGGCGGCCAGACTGGCCAAGGAAGCCAAGTCAGAGACCTCAGGGCCCCAG ATCAAGGAGCTAACTGATGAAGAGGCAGAGAGGCTGCAGCTAGAGATTGACCAGAAAAAGGATGCAGAGAATCATGAGGCCCAGCTCAAG AACGGCAGCCTTGACTCCCCAGGGAAGCAGGATACTGAGGAAGATGAGGAGGAAGATGAGAAGGACAAAGGAAAACTGAAGCCCAACCTA GGCAACGGGGCAGACCTGCCCAATTACCGCTGGACCCAGACCCTGTCGGAGCTGGACCTGGCGGTCCCTTTCTGTGTGAACTTCCGGCTG AAAGGGAAGGACATGGTGGTGGACATCCAGCGGCGGCACCTCCGGGTGGGGCTCAAGGGGCAGCCAGCGATCATTGATGGGGAGCTCTAC AATGAAGTGAAGGTGGAGGAGAGCTCGTGGCTCATTGAGGACGGCAAGGTGGTGACTGTGCATCTGGAGAAGATCAATAAGATGGAGTGG TGGAGCCGCTTGGTGTCCAGTGACCCTGAGATCAACACCAAGAAGATTAACCCTGAGAATTCCAAGCTGTCAGACCTGGACAGTGAGACT CGCAGCATGGTGGAAAAGATGATGTATGACCAGCGACAGAAGTCCATGGGGCTGCCAACTTCAGACGAACAGAAGAAACAGGAGATTCTG >In-frame_ARID1A_ENST00000457599_chr1_27059283_+_NUDC_ENST00000321265_chr1_27267948_+_2757nt ATGGCCGCGCAGGTCGCCCCCGCCGCCGCCAGCAGCCTGGGCAACCCGCCGCCGCCGCCGCCCTCGGAGCTGAAGAAAGCCGAGCAGCAG CAGCGGGAGGAGGCGGGGGGCGAGGCGGCGGCGGCGGCAGCGGCCGAGCGCGGGGAAATGAAGGCAGCCGCCGGGCAGGAAAGCGAGGGC CCCGCCGTGGGGCCGCCGCAGCCGCTGGGAAAGGAGCTGCAGGACGGGGCCGAGAGCAATGGGGGTGGCGGCGGCGGCGGAGCCGGCAGC GGCGGCGGGCCCGGCGCGGAGCCGGACCTGAAGAACTCGAACGGGAACGCGGGCCCTAGGCCCGCCCTGAACAATAACCTCACGGAGCCG CCCGGCGGCGGCGGTGGCGGCAGCAGCGATGGGGTGGGGGCGCCTCCTCACTCAGCCGCGGCCGCCTTGCCGCCCCCAGCCTACGGCTTC GGGCAACCCTACGGCCGGAGCCCGTCTGCCGTCGCCGCCGCCGCGGCCGCCGTCTTCCACCAACAACATGGCGGACAACAAAGCCCTGGC CTGGCAGCGCTGCAGAGCGGCGGCGGCGGGGGCCTGGAGCCCTACGCGGGGCCCCAGCAGAACTCTCACGACCACGGCTTCCCCAACCAC CAGTACAACTCCTACTACCCCAACCGCAGCGCCTACCCCCCGCCCGCCCCGGCCTACGCGCTGAGCTCCCCGAGAGGTGGCACTCCGGGC TCCGGCGCGGCGGCGGCTGCCGGCTCCAAGCCGCCTCCCTCCTCCAGCGCCTCCGCCTCCTCGTCGTCTTCGTCCTTCGCTCAGCAGCGC TTCGGGGCCATGGGGGGAGGCGGCCCCTCCGCGGCCGGCGGGGGAACTCCCCAGCCCACCGCCACCCCCACCCTCAACCAACTGCTCACG TCGCCCAGCTCGGCCCGGGGCTACCAGGGCTACCCCGGGGGCGACTACAGTGGCGGGCCCCAGGACGGGGGCGCCGGCAAGGGCCCGGCG GACATGGCCTCGCAGTGTTGGGGGGCTGCGGCGGCGGCAGCTGCGGCGGCGGCCGCCTCGGGAGGGGCCCAACAAAGGAGCCACCACGCG CCCATGAGCCCCGGGAGCAGCGGCGGCGGGGGGCAGCCGCTCGCCCGGACCCCTCAGCCATCCAGTCCAATGGATCAGATGGGCAAGATG AGACCTCAGCCATATGGCGGGACTAACCCATACTCGCAGCAACAGGGACCTCCGTCAGGACCGCAGCAAGGACATGGGTACCCAGGGCAG CCATACGGGTCCCAGACCCCGCAGCGGTACCCGATGACCATGCAGGGCCGGGCGCAGAGTGCCATGGGCGGCCTCTCTTATACACAGCAG ATTCCTCCTTATGGACAACAAGGCCCCAGCGGGTATGGTCAACAGGGCCAGACTCCATATTACAACCAGCAAAGTCCTCACCCTCAGCAG CAGCAGCCACCCTACTCCCAGCAACCACCGTCCCAGACCCCTCATGCCCAACCTTCGTATCAGCAGCAGCCACAGTCTCAACCACCACAG CTCCAGTCCTCTCAGCCTCCATACTCCCAGCAGCCATCCCAGCCTCCACATCAGCAGTCCCCGGCTCCATACCCCTCCCAGCAGTCGACG ACACAGCAGCACCCCCAGAGCCAGCCCCCCTACTCACAGCCACAGGCTCAGTCTCCTTACCAGCAGCAGCAACCTCAGCAGCCAGCACCC TCGACGCTCTCCCAGCAGGCTGCGTATCCTCAGCCCCAGTCTCAGCAGTCCCAGCAAACTGCCTATTCCCAGCAGCGCTTCCCTCCACCG CAGGAGCTATCTCAAGATTCATTTGGGTCTCAGGCATCCTCAGCCCCCTCAATGACCTCCAGTAAGGGAGGGCAAGAAGATATGAACCTG AGCCTTCAGTCAAGACCCTCCAGCTTGCCTCTTATCACACAGACTTTCAGCCACCACAATCAGCTGGCACAGAAGACCCGGCGGGAGAAG AGAGCCCGGCAGGAGGCCGAGCGGCGGGAGAAGGCGGAGCGGGCGGCCAGACTGGCCAAGGAAGCCAAGTCAGAGACCTCAGGGCCCCAG ATCAAGGAGCTAACTGATGAAGAGGCAGAGAGGCTGCAGCTAGAGATTGACCAGAAAAAGGATGCAGAGAATCATGAGGCCCAGCTCAAG AACGGCAGCCTTGACTCCCCAGGGAAGCAGGATACTGAGGAAGATGAGGAGGAAGATGAGAAGGACAAAGGAAAACTGAAGCCCAACCTA GGCAACGGGGCAGACCTGCCCAATTACCGCTGGACCCAGACCCTGTCGGAGCTGGACCTGGCGGTCCCTTTCTGTGTGAACTTCCGGCTG AAAGGGAAGGACATGGTGGTGGACATCCAGCGGCGGCACCTCCGGGTGGGGCTCAAGGGGCAGCCAGCGATCATTGATGGGGAGCTCTAC AATGAAGTGAAGGTGGAGGAGAGCTCGTGGCTCATTGAGGACGGCAAGGTGGTGACTGTGCATCTGGAGAAGATCAATAAGATGGAGTGG TGGAGCCGCTTGGTGTCCAGTGACCCTGAGATCAACACCAAGAAGATTAACCCTGAGAATTCCAAGCTGTCAGACCTGGACAGTGAGACT CGCAGCATGGTGGAAAAGATGATGTATGACCAGCGACAGAAGTCCATGGGGCTGCCAACTTCAGACGAACAGAAGAAACAGGAGATTCTG >In-frame_ARID1A_ENST00000374152_chr1_27059283_+_NUDC_ENST00000321265_chr1_27267948_+_1608nt ATGGATCAGATGGGCAAGATGAGACCTCAGCCATATGGCGGGACTAACCCATACTCGCAGCAACAGGGACCTCCGTCAGGACCGCAGCAA GGACATGGGTACCCAGGGCAGCCATACGGGTCCCAGACCCCGCAGCGGTACCCGATGACCATGCAGGGCCGGGCGCAGAGTGCCATGGGC GGCCTCTCTTATACACAGCAGATTCCTCCTTATGGACAACAAGGCCCCAGCGGGTATGGTCAACAGGGCCAGACTCCATATTACAACCAG CAAAGTCCTCACCCTCAGCAGCAGCAGCCACCCTACTCCCAGCAACCACCGTCCCAGACCCCTCATGCCCAACCTTCGTATCAGCAGCAG CCACAGTCTCAACCACCACAGCTCCAGTCCTCTCAGCCTCCATACTCCCAGCAGCCATCCCAGCCTCCACATCAGCAGTCCCCGGCTCCA TACCCCTCCCAGCAGTCGACGACACAGCAGCACCCCCAGAGCCAGCCCCCCTACTCACAGCCACAGGCTCAGTCTCCTTACCAGCAGCAG CAACCTCAGCAGCCAGCACCCTCGACGCTCTCCCAGCAGGCTGCGTATCCTCAGCCCCAGTCTCAGCAGTCCCAGCAAACTGCCTATTCC CAGCAGCGCTTCCCTCCACCGCAGGAGCTATCTCAAGATTCATTTGGGTCTCAGGCATCCTCAGCCCCCTCAATGACCTCCAGTAAGGGA GGGCAAGAAGATATGAACCTGAGCCTTCAGTCAAGACCCTCCAGCTTGCCTCTTATCACACAGACTTTCAGCCACCACAATCAGCTGGCA CAGAAGACCCGGCGGGAGAAGAGAGCCCGGCAGGAGGCCGAGCGGCGGGAGAAGGCGGAGCGGGCGGCCAGACTGGCCAAGGAAGCCAAG TCAGAGACCTCAGGGCCCCAGATCAAGGAGCTAACTGATGAAGAGGCAGAGAGGCTGCAGCTAGAGATTGACCAGAAAAAGGATGCAGAG AATCATGAGGCCCAGCTCAAGAACGGCAGCCTTGACTCCCCAGGGAAGCAGGATACTGAGGAAGATGAGGAGGAAGATGAGAAGGACAAA GGAAAACTGAAGCCCAACCTAGGCAACGGGGCAGACCTGCCCAATTACCGCTGGACCCAGACCCTGTCGGAGCTGGACCTGGCGGTCCCT TTCTGTGTGAACTTCCGGCTGAAAGGGAAGGACATGGTGGTGGACATCCAGCGGCGGCACCTCCGGGTGGGGCTCAAGGGGCAGCCAGCG ATCATTGATGGGGAGCTCTACAATGAAGTGAAGGTGGAGGAGAGCTCGTGGCTCATTGAGGACGGCAAGGTGGTGACTGTGCATCTGGAG AAGATCAATAAGATGGAGTGGTGGAGCCGCTTGGTGTCCAGTGACCCTGAGATCAACACCAAGAAGATTAACCCTGAGAATTCCAAGCTG TCAGACCTGGACAGTGAGACTCGCAGCATGGTGGAAAAGATGATGTATGACCAGCGACAGAAGTCCATGGGGCTGCCAACTTCAGACGAA |
| * Fusion transcript sequences (Full-length transcript). |
| >In-frame_ARID1A_ENST00000324856_chr1_27059283_+_NUDC_ENST00000321265_chr1_27267948_+_3809nt GAAAGCGGAGAGTCACAGCGGGGCCAGGCCCTGGGGAGCGGAGCCTCCACCGCCCCCCTCATTCCCAGGCAAGGGCTTGGGGGGAATGAG CCGGGAGAGCCGGGTCCCGAGCCTACAGAGCCGGGAGCAGCTGAGCCGCCGGCGCCTCGGCCGCCGCCGCCGCCTCCTCCTCCTCCGCCG CCGCCAGCCCGGAGCCTGAGCCGGCGGGGCGGGGGGGAGAGGAGCGAGCGCAGCGCAGCAGCGGAGCCCCGCGAGGCCCGCCCGGGCGGG TGGGGAGGGCAGCCCGGGGGACTGGGCCCCGGGGCGGGGTGGGAGGGGGGGAGAAGACGAAGACAGGGCCGGGTCTCTCCGCGGACGAGA CAGCGGGGATCATGGCCGCGCAGGTCGCCCCCGCCGCCGCCAGCAGCCTGGGCAACCCGCCGCCGCCGCCGCCCTCGGAGCTGAAGAAAG CCGAGCAGCAGCAGCGGGAGGAGGCGGGGGGCGAGGCGGCGGCGGCGGCAGCGGCCGAGCGCGGGGAAATGAAGGCAGCCGCCGGGCAGG AAAGCGAGGGCCCCGCCGTGGGGCCGCCGCAGCCGCTGGGAAAGGAGCTGCAGGACGGGGCCGAGAGCAATGGGGGTGGCGGCGGCGGCG GAGCCGGCAGCGGCGGCGGGCCCGGCGCGGAGCCGGACCTGAAGAACTCGAACGGGAACGCGGGCCCTAGGCCCGCCCTGAACAATAACC TCACGGAGCCGCCCGGCGGCGGCGGTGGCGGCAGCAGCGATGGGGTGGGGGCGCCTCCTCACTCAGCCGCGGCCGCCTTGCCGCCCCCAG CCTACGGCTTCGGGCAACCCTACGGCCGGAGCCCGTCTGCCGTCGCCGCCGCCGCGGCCGCCGTCTTCCACCAACAACATGGCGGACAAC AAAGCCCTGGCCTGGCAGCGCTGCAGAGCGGCGGCGGCGGGGGCCTGGAGCCCTACGCGGGGCCCCAGCAGAACTCTCACGACCACGGCT TCCCCAACCACCAGTACAACTCCTACTACCCCAACCGCAGCGCCTACCCCCCGCCCGCCCCGGCCTACGCGCTGAGCTCCCCGAGAGGTG GCACTCCGGGCTCCGGCGCGGCGGCGGCTGCCGGCTCCAAGCCGCCTCCCTCCTCCAGCGCCTCCGCCTCCTCGTCGTCTTCGTCCTTCG CTCAGCAGCGCTTCGGGGCCATGGGGGGAGGCGGCCCCTCCGCGGCCGGCGGGGGAACTCCCCAGCCCACCGCCACCCCCACCCTCAACC AACTGCTCACGTCGCCCAGCTCGGCCCGGGGCTACCAGGGCTACCCCGGGGGCGACTACAGTGGCGGGCCCCAGGACGGGGGCGCCGGCA AGGGCCCGGCGGACATGGCCTCGCAGTGTTGGGGGGCTGCGGCGGCGGCAGCTGCGGCGGCGGCCGCCTCGGGAGGGGCCCAACAAAGGA GCCACCACGCGCCCATGAGCCCCGGGAGCAGCGGCGGCGGGGGGCAGCCGCTCGCCCGGACCCCTCAGCCATCCAGTCCAATGGATCAGA TGGGCAAGATGAGACCTCAGCCATATGGCGGGACTAACCCATACTCGCAGCAACAGGGACCTCCGTCAGGACCGCAGCAAGGACATGGGT ACCCAGGGCAGCCATACGGGTCCCAGACCCCGCAGCGGTACCCGATGACCATGCAGGGCCGGGCGCAGAGTGCCATGGGCGGCCTCTCTT ATACACAGCAGATTCCTCCTTATGGACAACAAGGCCCCAGCGGGTATGGTCAACAGGGCCAGACTCCATATTACAACCAGCAAAGTCCTC ACCCTCAGCAGCAGCAGCCACCCTACTCCCAGCAACCACCGTCCCAGACCCCTCATGCCCAACCTTCGTATCAGCAGCAGCCACAGTCTC AACCACCACAGCTCCAGTCCTCTCAGCCTCCATACTCCCAGCAGCCATCCCAGCCTCCACATCAGCAGTCCCCGGCTCCATACCCCTCCC AGCAGTCGACGACACAGCAGCACCCCCAGAGCCAGCCCCCCTACTCACAGCCACAGGCTCAGTCTCCTTACCAGCAGCAGCAACCTCAGC AGCCAGCACCCTCGACGCTCTCCCAGCAGGCTGCGTATCCTCAGCCCCAGTCTCAGCAGTCCCAGCAAACTGCCTATTCCCAGCAGCGCT TCCCTCCACCGCAGGAGCTATCTCAAGATTCATTTGGGTCTCAGGCATCCTCAGCCCCCTCAATGACCTCCAGTAAGGGAGGGCAAGAAG ATATGAACCTGAGCCTTCAGTCAAGACCCTCCAGCTTGCCTCTTATCACACAGACTTTCAGCCACCACAATCAGCTGGCACAGAAGACCC GGCGGGAGAAGAGAGCCCGGCAGGAGGCCGAGCGGCGGGAGAAGGCGGAGCGGGCGGCCAGACTGGCCAAGGAAGCCAAGTCAGAGACCT CAGGGCCCCAGATCAAGGAGCTAACTGATGAAGAGGCAGAGAGGCTGCAGCTAGAGATTGACCAGAAAAAGGATGCAGAGAATCATGAGG CCCAGCTCAAGAACGGCAGCCTTGACTCCCCAGGGAAGCAGGATACTGAGGAAGATGAGGAGGAAGATGAGAAGGACAAAGGAAAACTGA AGCCCAACCTAGGCAACGGGGCAGACCTGCCCAATTACCGCTGGACCCAGACCCTGTCGGAGCTGGACCTGGCGGTCCCTTTCTGTGTGA ACTTCCGGCTGAAAGGGAAGGACATGGTGGTGGACATCCAGCGGCGGCACCTCCGGGTGGGGCTCAAGGGGCAGCCAGCGATCATTGATG GGGAGCTCTACAATGAAGTGAAGGTGGAGGAGAGCTCGTGGCTCATTGAGGACGGCAAGGTGGTGACTGTGCATCTGGAGAAGATCAATA AGATGGAGTGGTGGAGCCGCTTGGTGTCCAGTGACCCTGAGATCAACACCAAGAAGATTAACCCTGAGAATTCCAAGCTGTCAGACCTGG ACAGTGAGACTCGCAGCATGGTGGAAAAGATGATGTATGACCAGCGACAGAAGTCCATGGGGCTGCCAACTTCAGACGAACAGAAGAAAC AGGAGATTCTGAAGAAGTTCATGGATCAACATCCGGAGATGGATTTTTCCAAGGCTAAATTCAACTAGCCCCTGTTTTTTCCTCCCTGAA CTCTTGGGGCTGAGCTGCAACCACCCAACTTTCTTTCCCACTCTTCTCTGGGACTTGTGGGCCTCAGGGCTTGGGGCAGGCATGGGACTG GCCCAGGCACACAGGTCCCGGGGCATCAGGAGAAAGGCTGGGTCTTGGGACCTTGTCCTCCCCAGTTGGCCTACTGTTACACATTAAAAC GATTTGCCCAGCTCCTTCTGTGTCCTCTCTTGCCTCTGGCCTTTCTCTGGGGCACAGGCCTCTTACGGCTGCTGCTGGGAACTGGGAGTT TGGCTTCTAGCCCAGATTCTGCCATGTGACCTAGGGCACATCCTTGCCCCTCTCTGGGCCTCAGTTTCTCATTACTTAAAGATTAAAACA AGGCTTGGCCGGGTGTGATGGTTCATGTCTGTAATCCCAGCACTTTGGGAGGCTGAGGGGAGCAGATCACCTGATGTCAGGAGTTTGAGA CCAGCTTGGCCAACATGGAGAAACCCAGTCTCTACTAAAAATACAAAAATTAGCCGGGTGTGGTGGTGCACACCTGTAATCCCAGCTACT CGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGTGGCGGAGGTTGCAGTGAGCCGAGATTGCACTACTTCACTCCAGCATGGGTGAC >In-frame_ARID1A_ENST00000457599_chr1_27059283_+_NUDC_ENST00000321265_chr1_27267948_+_3438nt ATGGCCGCGCAGGTCGCCCCCGCCGCCGCCAGCAGCCTGGGCAACCCGCCGCCGCCGCCGCCCTCGGAGCTGAAGAAAGCCGAGCAGCAG CAGCGGGAGGAGGCGGGGGGCGAGGCGGCGGCGGCGGCAGCGGCCGAGCGCGGGGAAATGAAGGCAGCCGCCGGGCAGGAAAGCGAGGGC CCCGCCGTGGGGCCGCCGCAGCCGCTGGGAAAGGAGCTGCAGGACGGGGCCGAGAGCAATGGGGGTGGCGGCGGCGGCGGAGCCGGCAGC GGCGGCGGGCCCGGCGCGGAGCCGGACCTGAAGAACTCGAACGGGAACGCGGGCCCTAGGCCCGCCCTGAACAATAACCTCACGGAGCCG CCCGGCGGCGGCGGTGGCGGCAGCAGCGATGGGGTGGGGGCGCCTCCTCACTCAGCCGCGGCCGCCTTGCCGCCCCCAGCCTACGGCTTC GGGCAACCCTACGGCCGGAGCCCGTCTGCCGTCGCCGCCGCCGCGGCCGCCGTCTTCCACCAACAACATGGCGGACAACAAAGCCCTGGC CTGGCAGCGCTGCAGAGCGGCGGCGGCGGGGGCCTGGAGCCCTACGCGGGGCCCCAGCAGAACTCTCACGACCACGGCTTCCCCAACCAC CAGTACAACTCCTACTACCCCAACCGCAGCGCCTACCCCCCGCCCGCCCCGGCCTACGCGCTGAGCTCCCCGAGAGGTGGCACTCCGGGC TCCGGCGCGGCGGCGGCTGCCGGCTCCAAGCCGCCTCCCTCCTCCAGCGCCTCCGCCTCCTCGTCGTCTTCGTCCTTCGCTCAGCAGCGC TTCGGGGCCATGGGGGGAGGCGGCCCCTCCGCGGCCGGCGGGGGAACTCCCCAGCCCACCGCCACCCCCACCCTCAACCAACTGCTCACG TCGCCCAGCTCGGCCCGGGGCTACCAGGGCTACCCCGGGGGCGACTACAGTGGCGGGCCCCAGGACGGGGGCGCCGGCAAGGGCCCGGCG GACATGGCCTCGCAGTGTTGGGGGGCTGCGGCGGCGGCAGCTGCGGCGGCGGCCGCCTCGGGAGGGGCCCAACAAAGGAGCCACCACGCG CCCATGAGCCCCGGGAGCAGCGGCGGCGGGGGGCAGCCGCTCGCCCGGACCCCTCAGCCATCCAGTCCAATGGATCAGATGGGCAAGATG AGACCTCAGCCATATGGCGGGACTAACCCATACTCGCAGCAACAGGGACCTCCGTCAGGACCGCAGCAAGGACATGGGTACCCAGGGCAG CCATACGGGTCCCAGACCCCGCAGCGGTACCCGATGACCATGCAGGGCCGGGCGCAGAGTGCCATGGGCGGCCTCTCTTATACACAGCAG ATTCCTCCTTATGGACAACAAGGCCCCAGCGGGTATGGTCAACAGGGCCAGACTCCATATTACAACCAGCAAAGTCCTCACCCTCAGCAG CAGCAGCCACCCTACTCCCAGCAACCACCGTCCCAGACCCCTCATGCCCAACCTTCGTATCAGCAGCAGCCACAGTCTCAACCACCACAG CTCCAGTCCTCTCAGCCTCCATACTCCCAGCAGCCATCCCAGCCTCCACATCAGCAGTCCCCGGCTCCATACCCCTCCCAGCAGTCGACG ACACAGCAGCACCCCCAGAGCCAGCCCCCCTACTCACAGCCACAGGCTCAGTCTCCTTACCAGCAGCAGCAACCTCAGCAGCCAGCACCC TCGACGCTCTCCCAGCAGGCTGCGTATCCTCAGCCCCAGTCTCAGCAGTCCCAGCAAACTGCCTATTCCCAGCAGCGCTTCCCTCCACCG CAGGAGCTATCTCAAGATTCATTTGGGTCTCAGGCATCCTCAGCCCCCTCAATGACCTCCAGTAAGGGAGGGCAAGAAGATATGAACCTG AGCCTTCAGTCAAGACCCTCCAGCTTGCCTCTTATCACACAGACTTTCAGCCACCACAATCAGCTGGCACAGAAGACCCGGCGGGAGAAG AGAGCCCGGCAGGAGGCCGAGCGGCGGGAGAAGGCGGAGCGGGCGGCCAGACTGGCCAAGGAAGCCAAGTCAGAGACCTCAGGGCCCCAG ATCAAGGAGCTAACTGATGAAGAGGCAGAGAGGCTGCAGCTAGAGATTGACCAGAAAAAGGATGCAGAGAATCATGAGGCCCAGCTCAAG AACGGCAGCCTTGACTCCCCAGGGAAGCAGGATACTGAGGAAGATGAGGAGGAAGATGAGAAGGACAAAGGAAAACTGAAGCCCAACCTA GGCAACGGGGCAGACCTGCCCAATTACCGCTGGACCCAGACCCTGTCGGAGCTGGACCTGGCGGTCCCTTTCTGTGTGAACTTCCGGCTG AAAGGGAAGGACATGGTGGTGGACATCCAGCGGCGGCACCTCCGGGTGGGGCTCAAGGGGCAGCCAGCGATCATTGATGGGGAGCTCTAC AATGAAGTGAAGGTGGAGGAGAGCTCGTGGCTCATTGAGGACGGCAAGGTGGTGACTGTGCATCTGGAGAAGATCAATAAGATGGAGTGG TGGAGCCGCTTGGTGTCCAGTGACCCTGAGATCAACACCAAGAAGATTAACCCTGAGAATTCCAAGCTGTCAGACCTGGACAGTGAGACT CGCAGCATGGTGGAAAAGATGATGTATGACCAGCGACAGAAGTCCATGGGGCTGCCAACTTCAGACGAACAGAAGAAACAGGAGATTCTG AAGAAGTTCATGGATCAACATCCGGAGATGGATTTTTCCAAGGCTAAATTCAACTAGCCCCTGTTTTTTCCTCCCTGAACTCTTGGGGCT GAGCTGCAACCACCCAACTTTCTTTCCCACTCTTCTCTGGGACTTGTGGGCCTCAGGGCTTGGGGCAGGCATGGGACTGGCCCAGGCACA CAGGTCCCGGGGCATCAGGAGAAAGGCTGGGTCTTGGGACCTTGTCCTCCCCAGTTGGCCTACTGTTACACATTAAAACGATTTGCCCAG CTCCTTCTGTGTCCTCTCTTGCCTCTGGCCTTTCTCTGGGGCACAGGCCTCTTACGGCTGCTGCTGGGAACTGGGAGTTTGGCTTCTAGC CCAGATTCTGCCATGTGACCTAGGGCACATCCTTGCCCCTCTCTGGGCCTCAGTTTCTCATTACTTAAAGATTAAAACAAGGCTTGGCCG GGTGTGATGGTTCATGTCTGTAATCCCAGCACTTTGGGAGGCTGAGGGGAGCAGATCACCTGATGTCAGGAGTTTGAGACCAGCTTGGCC AACATGGAGAAACCCAGTCTCTACTAAAAATACAAAAATTAGCCGGGTGTGGTGGTGCACACCTGTAATCCCAGCTACTCGGGAGGCTGA GGCAGGAGAATCGCTTGAACCCGGGTGGCGGAGGTTGCAGTGAGCCGAGATTGCACTACTTCACTCCAGCATGGGTGACAGAGACTCCAT >In-frame_ARID1A_ENST00000374152_chr1_27059283_+_NUDC_ENST00000321265_chr1_27267948_+_2572nt TGGATCTCAAGCAGTACCACAGTTACAAAGTAGTTTTTAGCTTACAAGGTGTTTTCACAAATAGGTGGTATTTTCATTTTTCAAATGACA AAATTAGGGTTCTGAGGCGGGTCAGTTGACTTAAAGGTTACTAGGTTGGTCTCATTGCTCTTTCAAAGTAACTGTATTTCTTTATAGCAT ACAGACTAAAAAAACCTGTGTACTTGGGTTATATATTCAGTGGCCAGAGGCCATCAAAGCTCAGGTTAATGAAATGCTCTTTATTTTGTA GCCATCCAGTCCAATGGATCAGATGGGCAAGATGAGACCTCAGCCATATGGCGGGACTAACCCATACTCGCAGCAACAGGGACCTCCGTC AGGACCGCAGCAAGGACATGGGTACCCAGGGCAGCCATACGGGTCCCAGACCCCGCAGCGGTACCCGATGACCATGCAGGGCCGGGCGCA GAGTGCCATGGGCGGCCTCTCTTATACACAGCAGATTCCTCCTTATGGACAACAAGGCCCCAGCGGGTATGGTCAACAGGGCCAGACTCC ATATTACAACCAGCAAAGTCCTCACCCTCAGCAGCAGCAGCCACCCTACTCCCAGCAACCACCGTCCCAGACCCCTCATGCCCAACCTTC GTATCAGCAGCAGCCACAGTCTCAACCACCACAGCTCCAGTCCTCTCAGCCTCCATACTCCCAGCAGCCATCCCAGCCTCCACATCAGCA GTCCCCGGCTCCATACCCCTCCCAGCAGTCGACGACACAGCAGCACCCCCAGAGCCAGCCCCCCTACTCACAGCCACAGGCTCAGTCTCC TTACCAGCAGCAGCAACCTCAGCAGCCAGCACCCTCGACGCTCTCCCAGCAGGCTGCGTATCCTCAGCCCCAGTCTCAGCAGTCCCAGCA AACTGCCTATTCCCAGCAGCGCTTCCCTCCACCGCAGGAGCTATCTCAAGATTCATTTGGGTCTCAGGCATCCTCAGCCCCCTCAATGAC CTCCAGTAAGGGAGGGCAAGAAGATATGAACCTGAGCCTTCAGTCAAGACCCTCCAGCTTGCCTCTTATCACACAGACTTTCAGCCACCA CAATCAGCTGGCACAGAAGACCCGGCGGGAGAAGAGAGCCCGGCAGGAGGCCGAGCGGCGGGAGAAGGCGGAGCGGGCGGCCAGACTGGC CAAGGAAGCCAAGTCAGAGACCTCAGGGCCCCAGATCAAGGAGCTAACTGATGAAGAGGCAGAGAGGCTGCAGCTAGAGATTGACCAGAA AAAGGATGCAGAGAATCATGAGGCCCAGCTCAAGAACGGCAGCCTTGACTCCCCAGGGAAGCAGGATACTGAGGAAGATGAGGAGGAAGA TGAGAAGGACAAAGGAAAACTGAAGCCCAACCTAGGCAACGGGGCAGACCTGCCCAATTACCGCTGGACCCAGACCCTGTCGGAGCTGGA CCTGGCGGTCCCTTTCTGTGTGAACTTCCGGCTGAAAGGGAAGGACATGGTGGTGGACATCCAGCGGCGGCACCTCCGGGTGGGGCTCAA GGGGCAGCCAGCGATCATTGATGGGGAGCTCTACAATGAAGTGAAGGTGGAGGAGAGCTCGTGGCTCATTGAGGACGGCAAGGTGGTGAC TGTGCATCTGGAGAAGATCAATAAGATGGAGTGGTGGAGCCGCTTGGTGTCCAGTGACCCTGAGATCAACACCAAGAAGATTAACCCTGA GAATTCCAAGCTGTCAGACCTGGACAGTGAGACTCGCAGCATGGTGGAAAAGATGATGTATGACCAGCGACAGAAGTCCATGGGGCTGCC AACTTCAGACGAACAGAAGAAACAGGAGATTCTGAAGAAGTTCATGGATCAACATCCGGAGATGGATTTTTCCAAGGCTAAATTCAACTA GCCCCTGTTTTTTCCTCCCTGAACTCTTGGGGCTGAGCTGCAACCACCCAACTTTCTTTCCCACTCTTCTCTGGGACTTGTGGGCCTCAG GGCTTGGGGCAGGCATGGGACTGGCCCAGGCACACAGGTCCCGGGGCATCAGGAGAAAGGCTGGGTCTTGGGACCTTGTCCTCCCCAGTT GGCCTACTGTTACACATTAAAACGATTTGCCCAGCTCCTTCTGTGTCCTCTCTTGCCTCTGGCCTTTCTCTGGGGCACAGGCCTCTTACG GCTGCTGCTGGGAACTGGGAGTTTGGCTTCTAGCCCAGATTCTGCCATGTGACCTAGGGCACATCCTTGCCCCTCTCTGGGCCTCAGTTT CTCATTACTTAAAGATTAAAACAAGGCTTGGCCGGGTGTGATGGTTCATGTCTGTAATCCCAGCACTTTGGGAGGCTGAGGGGAGCAGAT CACCTGATGTCAGGAGTTTGAGACCAGCTTGGCCAACATGGAGAAACCCAGTCTCTACTAAAAATACAAAAATTAGCCGGGTGTGGTGGT GCACACCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGTGGCGGAGGTTGCAGTGAGCCGAGATTGCAC |
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FusionGenePPI for ARID1A_NUDC |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| ARID1A | KLF1, GATA1, SMARCB1, SMARCA4, SMARCA2, ING1, SMARCE1, PBRM1, SMARCC2, SMARCC1, PGR, BCL7C, HIC1, CUL2, ARID1B, SMAD2, SMAD3, CARM1, ADNP, RARA, SOX2, CHD7, SMARCD1, TP53, ELAVL1, SIRT7, TFAP4, CUL3, SMARCD2, ACTL6A, SMARCD3, PHF10, ECT2, YAP1, ITCH, NEDD4, SHMT2, MOV10, NXF1, EED, DPF3, DPF2, SS18, UNK, BCL7A, BCL7B, ESR1, NCOA1, RARB, RARG, EWSR1, SNW1, CDC5L, CUL1, SKP1, NFATC1, NFATC2, TOP1, CHEK1, VHL, EYA2, NR3C1, AR, ALDH2, TRIM25 | NUDC | DGKE, PLK1, PAFAH1B1, BTRC, FBXW11, WIPI2, HDAC5, HDGF, TINF2, ACD, POT1, HSP90AA1, IGBP1, TRMT1, NUBP2, CSTB, PPME1, TP53BP1, ITGA4, PPP6R2, ETF1, H3F3A, KARS, CORO1B, CORO1C, FAM129B, PUF60, TARS, UGP2, VPS26A, VPS29, VPS35, ZYX, PAPOLA, TLN1, FKBP5, DNAJA2, DNAJB1, MAEL, DNAJA1, RPS17, HUWE1, ENO1, MOV10, NXF1, CUL7, LLGL2, RPS6KB2, ADAM9, CAST, CCDC6, GAPDH, MAD1L1, MDH2, TIMM9, SOD1, NTRK1, NUP85, OFD1, MKS1, NPHP4, EVC2, NEK8, POC1A, POC1B, RPGR, SNW1, CDC5L, OTUB1, DCDC5, EML4, NFATC2, CDH1, PHLPP1, DNAJB4, GTF2H1, IFT80, WDR35, IFT172, WDR60, DLD, TRIM25, G3BP1, BRCA1 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for ARID1A_NUDC |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for ARID1A_NUDC |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | ARID1A | C0038356 | Stomach Neoplasms | 3 | CTD_human |
| Hgene | ARID1A | C2239176 | Liver carcinoma | 3 | CTD_human |
| Hgene | ARID1A | C0001418 | Adenocarcinoma | 1 | CTD_human |
| Hgene | ARID1A | C0005695 | Bladder Neoplasm | 1 | CTD_human |
| Hgene | ARID1A | C0006413 | Burkitt Lymphoma | 1 | CTD_human |
| Hgene | ARID1A | C0007138 | Carcinoma, Transitional Cell | 1 | CTD_human |
| Hgene | ARID1A | C0010606 | Adenoid Cystic Carcinoma | 1 | CTD_human |
| Hgene | ARID1A | C0014170 | Endometrial Neoplasms | 1 | CTD_human |
| Hgene | ARID1A | C0027819 | Neuroblastoma | 1 | CTD_human |
| Hgene | ARID1A | C0036920 | Sezary Syndrome | 1 | CTD_human |
| Hgene | ARID1A | C0079772 | T-Cell Lymphoma | 1 | CTD_human |
| Hgene | ARID1A | C0079773 | Lymphoma, T-Cell, Cutaneous | 1 | CTD_human |
| Hgene | ARID1A | C0206698 | Cholangiocarcinoma | 1 | CTD_human |
| Hgene | ARID1A | C0265338 | Coffin-Siris syndrome | 1 | CTD_human;ORPHANET |
| Hgene | ARID1A | C0279628 | Adenocarcinoma Of Esophagus | 1 | CTD_human |
| Hgene | ARID1A | C0920269 | Microsatellite Instability | 1 | CTD_human |
| Hgene | ARID1A | C2931822 | Nasopharyngeal carcinoma | 1 | CTD_human |
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