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Fusion gene ID: 2604 |
FusionGeneSummary for ARID1A_BEND5 |
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Fusion gene information | Fusion gene name: ARID1A_BEND5 | Fusion gene ID: 2604 | Hgene | Tgene | Gene symbol | ARID1A | BEND5 | Gene ID | 8289 | 79656 |
Gene name | AT-rich interaction domain 1A | BEN domain containing 5 | |
Synonyms | B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1 | C1orf165 | |
Cytomap | 1p36.11 | 1p33 | |
Type of gene | protein-coding | protein-coding | |
Description | AT-rich interactive domain-containing protein 1AARID domain-containing protein 1AAT rich interactive domain 1A (SWI-like)BRG1-associated factor 250aOSA1 nuclear proteinSWI-like proteinSWI/SNF complex protein p270SWI/SNF-related, matrix-associated, | BEN domain-containing protein 5 | |
Modification date | 20180519 | 20180519 | |
UniProtAcc | O14497 | Q7L4P6 | |
Ensembl transtripts involved in fusion gene | ENST00000324856, ENST00000457599, ENST00000374152, ENST00000540690, | ENST00000371833, ENST00000476096, | |
Fusion gene scores | * DoF score | 21 X 13 X 13=3549 | 3 X 2 X 3=18 |
# samples | 31 | 4 | |
** MAII score | log2(31/3549*10)=-3.51707245378671 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(4/18*10)=1.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: ARID1A [Title/Abstract] AND BEND5 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation | Tumor suppressor gene involved fusion gene, in-frame but not retained their domain. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | ARID1A | GO:0006337 | nucleosome disassembly | 8895581 |
Hgene | ARID1A | GO:0006338 | chromatin remodeling | 11726552 |
Hgene | ARID1A | GO:0030520 | intracellular estrogen receptor signaling pathway | 12200431 |
Hgene | ARID1A | GO:0030521 | androgen receptor signaling pathway | 12200431 |
Hgene | ARID1A | GO:0042921 | glucocorticoid receptor signaling pathway | 12200431 |
Hgene | ARID1A | GO:0045893 | positive regulation of transcription, DNA-templated | 12200431 |
Tgene | BEND5 | GO:0045892 | negative regulation of transcription, DNA-templated | 23468431 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | GBM | TCGA-28-2514-01A | ARID1A | chr1 | 27024031 | + | BEND5 | chr1 | 49202124 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000324856 | ENST00000371833 | ARID1A | chr1 | 27024031 | + | BEND5 | chr1 | 49202124 | - |
5CDS-intron | ENST00000324856 | ENST00000476096 | ARID1A | chr1 | 27024031 | + | BEND5 | chr1 | 49202124 | - |
In-frame | ENST00000457599 | ENST00000371833 | ARID1A | chr1 | 27024031 | + | BEND5 | chr1 | 49202124 | - |
5CDS-intron | ENST00000457599 | ENST00000476096 | ARID1A | chr1 | 27024031 | + | BEND5 | chr1 | 49202124 | - |
intron-3CDS | ENST00000374152 | ENST00000371833 | ARID1A | chr1 | 27024031 | + | BEND5 | chr1 | 49202124 | - |
intron-intron | ENST00000374152 | ENST00000476096 | ARID1A | chr1 | 27024031 | + | BEND5 | chr1 | 49202124 | - |
intron-3CDS | ENST00000540690 | ENST00000371833 | ARID1A | chr1 | 27024031 | + | BEND5 | chr1 | 49202124 | - |
intron-intron | ENST00000540690 | ENST00000476096 | ARID1A | chr1 | 27024031 | + | BEND5 | chr1 | 49202124 | - |
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FusionProtFeatures for ARID1A_BEND5 |
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Hgene | Tgene |
ARID1A | BEND5 |
Acts as a transcriptional repressor (PubMed:23468431).{ECO:0000269|PubMed:23468431}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | ARID1A | chr1:27024031 | chr1:49202124 | ENST00000324856 | + | 1 | 20 | 295_299 | 379 | 2286 | Motif | Note=LXXLL |
Hgene | ARID1A | chr1:27024031 | chr1:49202124 | ENST00000457599 | + | 1 | 20 | 295_299 | 379 | 2069 | Motif | Note=LXXLL |
Tgene | >BEND5 | chr1:27024031 | chr1:49202124 | ENST00000371833 | - | 3 | 6 | 302_408 | 298 | 422 | Domain | BEN |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >ARID1A | chr1:27024031 | chr1:49202124 | ENST00000324856 | + | 1 | 20 | 1327_1404 | 379 | 2286 | Compositional bias | Note=Gln-rich |
Hgene | >ARID1A | chr1:27024031 | chr1:49202124 | ENST00000324856 | + | 1 | 20 | 479_482 | 379 | 2286 | Compositional bias | Note=Poly-Gln |
Hgene | >ARID1A | chr1:27024031 | chr1:49202124 | ENST00000324856 | + | 1 | 20 | 561_567 | 379 | 2286 | Compositional bias | Note=Poly-Gln |
Hgene | >ARID1A | chr1:27024031 | chr1:49202124 | ENST00000324856 | + | 1 | 20 | 998_1001 | 379 | 2286 | Compositional bias | Note=Poly-Ser |
Hgene | >ARID1A | chr1:27024031 | chr1:49202124 | ENST00000374152 | + | 1 | 19 | 1327_1404 | -95 | 1903 | Compositional bias | Note=Gln-rich |
Hgene | >ARID1A | chr1:27024031 | chr1:49202124 | ENST00000374152 | + | 1 | 19 | 479_482 | -95 | 1903 | Compositional bias | Note=Poly-Gln |
Hgene | >ARID1A | chr1:27024031 | chr1:49202124 | ENST00000374152 | + | 1 | 19 | 561_567 | -95 | 1903 | Compositional bias | Note=Poly-Gln |
Hgene | >ARID1A | chr1:27024031 | chr1:49202124 | ENST00000374152 | + | 1 | 19 | 998_1001 | -95 | 1903 | Compositional bias | Note=Poly-Ser |
Hgene | >ARID1A | chr1:27024031 | chr1:49202124 | ENST00000457599 | + | 1 | 20 | 1327_1404 | 379 | 2069 | Compositional bias | Note=Gln-rich |
Hgene | >ARID1A | chr1:27024031 | chr1:49202124 | ENST00000457599 | + | 1 | 20 | 479_482 | 379 | 2069 | Compositional bias | Note=Poly-Gln |
Hgene | >ARID1A | chr1:27024031 | chr1:49202124 | ENST00000457599 | + | 1 | 20 | 561_567 | 379 | 2069 | Compositional bias | Note=Poly-Gln |
Hgene | >ARID1A | chr1:27024031 | chr1:49202124 | ENST00000457599 | + | 1 | 20 | 998_1001 | 379 | 2069 | Compositional bias | Note=Poly-Ser |
Hgene | >ARID1A | chr1:27024031 | chr1:49202124 | ENST00000324856 | + | 1 | 20 | 1017_1108 | 379 | 2286 | Domain | ARID |
Hgene | >ARID1A | chr1:27024031 | chr1:49202124 | ENST00000374152 | + | 1 | 19 | 1017_1108 | -95 | 1903 | Domain | ARID |
Hgene | >ARID1A | chr1:27024031 | chr1:49202124 | ENST00000457599 | + | 1 | 20 | 1017_1108 | 379 | 2069 | Domain | ARID |
Hgene | >ARID1A | chr1:27024031 | chr1:49202124 | ENST00000324856 | + | 1 | 20 | 1368_1387 | 379 | 2286 | Motif | Nuclear localization signal |
Hgene | >ARID1A | chr1:27024031 | chr1:49202124 | ENST00000324856 | + | 1 | 20 | 1709_1713 | 379 | 2286 | Motif | Note=LXXLL |
Hgene | >ARID1A | chr1:27024031 | chr1:49202124 | ENST00000324856 | + | 1 | 20 | 1967_1971 | 379 | 2286 | Motif | Note=LXXLL |
Hgene | >ARID1A | chr1:27024031 | chr1:49202124 | ENST00000324856 | + | 1 | 20 | 2085_2089 | 379 | 2286 | Motif | Note=LXXLL |
Hgene | >ARID1A | chr1:27024031 | chr1:49202124 | ENST00000374152 | + | 1 | 19 | 1368_1387 | -95 | 1903 | Motif | Nuclear localization signal |
Hgene | >ARID1A | chr1:27024031 | chr1:49202124 | ENST00000374152 | + | 1 | 19 | 1709_1713 | -95 | 1903 | Motif | Note=LXXLL |
Hgene | >ARID1A | chr1:27024031 | chr1:49202124 | ENST00000374152 | + | 1 | 19 | 1967_1971 | -95 | 1903 | Motif | Note=LXXLL |
Hgene | >ARID1A | chr1:27024031 | chr1:49202124 | ENST00000374152 | + | 1 | 19 | 2085_2089 | -95 | 1903 | Motif | Note=LXXLL |
Hgene | >ARID1A | chr1:27024031 | chr1:49202124 | ENST00000374152 | + | 1 | 19 | 295_299 | -95 | 1903 | Motif | Note=LXXLL |
Hgene | >ARID1A | chr1:27024031 | chr1:49202124 | ENST00000457599 | + | 1 | 20 | 1368_1387 | 379 | 2069 | Motif | Nuclear localization signal |
Hgene | >ARID1A | chr1:27024031 | chr1:49202124 | ENST00000457599 | + | 1 | 20 | 1709_1713 | 379 | 2069 | Motif | Note=LXXLL |
Hgene | >ARID1A | chr1:27024031 | chr1:49202124 | ENST00000457599 | + | 1 | 20 | 1967_1971 | 379 | 2069 | Motif | Note=LXXLL |
Hgene | >ARID1A | chr1:27024031 | chr1:49202124 | ENST00000457599 | + | 1 | 20 | 2085_2089 | 379 | 2069 | Motif | Note=LXXLL |
Tgene | BEND5 | chr1:27024031 | chr1:49202124 | ENST00000371833 | - | 3 | 6 | 180_243 | 298 | 422 | Coiled coil | Ontology_term=ECO:0000255 |
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FusionGeneSequence for ARID1A_BEND5 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_ARID1A_ENST00000324856_chr1_27024031_+_BEND5_ENST00000371833_chr1_49202124_-_503aa MAAQVAPAAASSLGNPPPPPPSELKKAEQQQREEAGGEAAAAAAAERGEMKAAAGQESEGPAVGPPQPLGKELQDGAESNGGGGGGGAGS GGGPGAEPDLKNSNGNAGPRPALNNNLTEPPGGGGGGSSDGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPG LAALQSGGGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPAPAYALSSPRGGTPGSGAAAAAGSKPPPSSSASASSSSSSFAQQR FGAMGGGGPSAAGGGTPQPTATPTLNQLLTSPSSARGYQGYPGGDYSGGPQDGGAGKGPADMASQCWGAAAAAAAAAAASGGAQQRSHHA PMSPGSSGGGGQPLARTPQVHLGSGIWVDEEKWHQLQVTQGDSKYTKNLAVMIWGTDVLKNRSVTGVATKKKKDAVPKPPLSPHKLSIVR >In-frame_ARID1A_ENST00000457599_chr1_27024031_+_BEND5_ENST00000371833_chr1_49202124_-_503aa MAAQVAPAAASSLGNPPPPPPSELKKAEQQQREEAGGEAAAAAAAERGEMKAAAGQESEGPAVGPPQPLGKELQDGAESNGGGGGGGAGS GGGPGAEPDLKNSNGNAGPRPALNNNLTEPPGGGGGGSSDGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPG LAALQSGGGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPAPAYALSSPRGGTPGSGAAAAAGSKPPPSSSASASSSSSSFAQQR FGAMGGGGPSAAGGGTPQPTATPTLNQLLTSPSSARGYQGYPGGDYSGGPQDGGAGKGPADMASQCWGAAAAAAAAAAASGGAQQRSHHA PMSPGSSGGGGQPLARTPQVHLGSGIWVDEEKWHQLQVTQGDSKYTKNLAVMIWGTDVLKNRSVTGVATKKKKDAVPKPPLSPHKLSIVR |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_ARID1A_ENST00000324856_chr1_27024031_+_BEND5_ENST00000371833_chr1_49202124_-_1509nt ATGGCCGCGCAGGTCGCCCCCGCCGCCGCCAGCAGCCTGGGCAACCCGCCGCCGCCGCCGCCCTCGGAGCTGAAGAAAGCCGAGCAGCAG CAGCGGGAGGAGGCGGGGGGCGAGGCGGCGGCGGCGGCAGCGGCCGAGCGCGGGGAAATGAAGGCAGCCGCCGGGCAGGAAAGCGAGGGC CCCGCCGTGGGGCCGCCGCAGCCGCTGGGAAAGGAGCTGCAGGACGGGGCCGAGAGCAATGGGGGTGGCGGCGGCGGCGGAGCCGGCAGC GGCGGCGGGCCCGGCGCGGAGCCGGACCTGAAGAACTCGAACGGGAACGCGGGCCCTAGGCCCGCCCTGAACAATAACCTCACGGAGCCG CCCGGCGGCGGCGGTGGCGGCAGCAGCGATGGGGTGGGGGCGCCTCCTCACTCAGCCGCGGCCGCCTTGCCGCCCCCAGCCTACGGCTTC GGGCAACCCTACGGCCGGAGCCCGTCTGCCGTCGCCGCCGCCGCGGCCGCCGTCTTCCACCAACAACATGGCGGACAACAAAGCCCTGGC CTGGCAGCGCTGCAGAGCGGCGGCGGCGGGGGCCTGGAGCCCTACGCGGGGCCCCAGCAGAACTCTCACGACCACGGCTTCCCCAACCAC CAGTACAACTCCTACTACCCCAACCGCAGCGCCTACCCCCCGCCCGCCCCGGCCTACGCGCTGAGCTCCCCGAGAGGTGGCACTCCGGGC TCCGGCGCGGCGGCGGCTGCCGGCTCCAAGCCGCCTCCCTCCTCCAGCGCCTCCGCCTCCTCGTCGTCTTCGTCCTTCGCTCAGCAGCGC TTCGGGGCCATGGGGGGAGGCGGCCCCTCCGCGGCCGGCGGGGGAACTCCCCAGCCCACCGCCACCCCCACCCTCAACCAACTGCTCACG TCGCCCAGCTCGGCCCGGGGCTACCAGGGCTACCCCGGGGGCGACTACAGTGGCGGGCCCCAGGACGGGGGCGCCGGCAAGGGCCCGGCG GACATGGCCTCGCAGTGTTGGGGGGCTGCGGCGGCGGCAGCTGCGGCGGCGGCCGCCTCGGGAGGGGCCCAACAAAGGAGCCACCACGCG CCCATGAGCCCCGGGAGCAGCGGCGGCGGGGGGCAGCCGCTCGCCCGGACCCCTCAGGTCCATCTGGGAAGCGGGATTTGGGTTGATGAG GAGAAATGGCACCAGCTACAAGTAACCCAAGGAGATTCCAAGTACACGAAGAACTTGGCAGTTATGATTTGGGGAACAGATGTTCTGAAA AACAGAAGCGTCACAGGCGTCGCCACAAAAAAAAAGAAAGATGCAGTCCCTAAACCACCCCTCTCGCCTCACAAACTAAGCATCGTCAGA GAGTGTTTGTATGACAGAATAGCACAAGAAACTGTGGATGAAACTGAAATTGCACAGAGACTCTCCAAAGTCAACAAGTACATCTGTGAA >In-frame_ARID1A_ENST00000457599_chr1_27024031_+_BEND5_ENST00000371833_chr1_49202124_-_1509nt ATGGCCGCGCAGGTCGCCCCCGCCGCCGCCAGCAGCCTGGGCAACCCGCCGCCGCCGCCGCCCTCGGAGCTGAAGAAAGCCGAGCAGCAG CAGCGGGAGGAGGCGGGGGGCGAGGCGGCGGCGGCGGCAGCGGCCGAGCGCGGGGAAATGAAGGCAGCCGCCGGGCAGGAAAGCGAGGGC CCCGCCGTGGGGCCGCCGCAGCCGCTGGGAAAGGAGCTGCAGGACGGGGCCGAGAGCAATGGGGGTGGCGGCGGCGGCGGAGCCGGCAGC GGCGGCGGGCCCGGCGCGGAGCCGGACCTGAAGAACTCGAACGGGAACGCGGGCCCTAGGCCCGCCCTGAACAATAACCTCACGGAGCCG CCCGGCGGCGGCGGTGGCGGCAGCAGCGATGGGGTGGGGGCGCCTCCTCACTCAGCCGCGGCCGCCTTGCCGCCCCCAGCCTACGGCTTC GGGCAACCCTACGGCCGGAGCCCGTCTGCCGTCGCCGCCGCCGCGGCCGCCGTCTTCCACCAACAACATGGCGGACAACAAAGCCCTGGC CTGGCAGCGCTGCAGAGCGGCGGCGGCGGGGGCCTGGAGCCCTACGCGGGGCCCCAGCAGAACTCTCACGACCACGGCTTCCCCAACCAC CAGTACAACTCCTACTACCCCAACCGCAGCGCCTACCCCCCGCCCGCCCCGGCCTACGCGCTGAGCTCCCCGAGAGGTGGCACTCCGGGC TCCGGCGCGGCGGCGGCTGCCGGCTCCAAGCCGCCTCCCTCCTCCAGCGCCTCCGCCTCCTCGTCGTCTTCGTCCTTCGCTCAGCAGCGC TTCGGGGCCATGGGGGGAGGCGGCCCCTCCGCGGCCGGCGGGGGAACTCCCCAGCCCACCGCCACCCCCACCCTCAACCAACTGCTCACG TCGCCCAGCTCGGCCCGGGGCTACCAGGGCTACCCCGGGGGCGACTACAGTGGCGGGCCCCAGGACGGGGGCGCCGGCAAGGGCCCGGCG GACATGGCCTCGCAGTGTTGGGGGGCTGCGGCGGCGGCAGCTGCGGCGGCGGCCGCCTCGGGAGGGGCCCAACAAAGGAGCCACCACGCG CCCATGAGCCCCGGGAGCAGCGGCGGCGGGGGGCAGCCGCTCGCCCGGACCCCTCAGGTCCATCTGGGAAGCGGGATTTGGGTTGATGAG GAGAAATGGCACCAGCTACAAGTAACCCAAGGAGATTCCAAGTACACGAAGAACTTGGCAGTTATGATTTGGGGAACAGATGTTCTGAAA AACAGAAGCGTCACAGGCGTCGCCACAAAAAAAAAGAAAGATGCAGTCCCTAAACCACCCCTCTCGCCTCACAAACTAAGCATCGTCAGA GAGTGTTTGTATGACAGAATAGCACAAGAAACTGTGGATGAAACTGAAATTGCACAGAGACTCTCCAAAGTCAACAAGTACATCTGTGAA |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_ARID1A_ENST00000324856_chr1_27024031_+_BEND5_ENST00000371833_chr1_49202124_-_2243nt GAAAGCGGAGAGTCACAGCGGGGCCAGGCCCTGGGGAGCGGAGCCTCCACCGCCCCCCTCATTCCCAGGCAAGGGCTTGGGGGGAATGAG CCGGGAGAGCCGGGTCCCGAGCCTACAGAGCCGGGAGCAGCTGAGCCGCCGGCGCCTCGGCCGCCGCCGCCGCCTCCTCCTCCTCCGCCG CCGCCAGCCCGGAGCCTGAGCCGGCGGGGCGGGGGGGAGAGGAGCGAGCGCAGCGCAGCAGCGGAGCCCCGCGAGGCCCGCCCGGGCGGG TGGGGAGGGCAGCCCGGGGGACTGGGCCCCGGGGCGGGGTGGGAGGGGGGGAGAAGACGAAGACAGGGCCGGGTCTCTCCGCGGACGAGA CAGCGGGGATCATGGCCGCGCAGGTCGCCCCCGCCGCCGCCAGCAGCCTGGGCAACCCGCCGCCGCCGCCGCCCTCGGAGCTGAAGAAAG CCGAGCAGCAGCAGCGGGAGGAGGCGGGGGGCGAGGCGGCGGCGGCGGCAGCGGCCGAGCGCGGGGAAATGAAGGCAGCCGCCGGGCAGG AAAGCGAGGGCCCCGCCGTGGGGCCGCCGCAGCCGCTGGGAAAGGAGCTGCAGGACGGGGCCGAGAGCAATGGGGGTGGCGGCGGCGGCG GAGCCGGCAGCGGCGGCGGGCCCGGCGCGGAGCCGGACCTGAAGAACTCGAACGGGAACGCGGGCCCTAGGCCCGCCCTGAACAATAACC TCACGGAGCCGCCCGGCGGCGGCGGTGGCGGCAGCAGCGATGGGGTGGGGGCGCCTCCTCACTCAGCCGCGGCCGCCTTGCCGCCCCCAG CCTACGGCTTCGGGCAACCCTACGGCCGGAGCCCGTCTGCCGTCGCCGCCGCCGCGGCCGCCGTCTTCCACCAACAACATGGCGGACAAC AAAGCCCTGGCCTGGCAGCGCTGCAGAGCGGCGGCGGCGGGGGCCTGGAGCCCTACGCGGGGCCCCAGCAGAACTCTCACGACCACGGCT TCCCCAACCACCAGTACAACTCCTACTACCCCAACCGCAGCGCCTACCCCCCGCCCGCCCCGGCCTACGCGCTGAGCTCCCCGAGAGGTG GCACTCCGGGCTCCGGCGCGGCGGCGGCTGCCGGCTCCAAGCCGCCTCCCTCCTCCAGCGCCTCCGCCTCCTCGTCGTCTTCGTCCTTCG CTCAGCAGCGCTTCGGGGCCATGGGGGGAGGCGGCCCCTCCGCGGCCGGCGGGGGAACTCCCCAGCCCACCGCCACCCCCACCCTCAACC AACTGCTCACGTCGCCCAGCTCGGCCCGGGGCTACCAGGGCTACCCCGGGGGCGACTACAGTGGCGGGCCCCAGGACGGGGGCGCCGGCA AGGGCCCGGCGGACATGGCCTCGCAGTGTTGGGGGGCTGCGGCGGCGGCAGCTGCGGCGGCGGCCGCCTCGGGAGGGGCCCAACAAAGGA GCCACCACGCGCCCATGAGCCCCGGGAGCAGCGGCGGCGGGGGGCAGCCGCTCGCCCGGACCCCTCAGGTCCATCTGGGAAGCGGGATTT GGGTTGATGAGGAGAAATGGCACCAGCTACAAGTAACCCAAGGAGATTCCAAGTACACGAAGAACTTGGCAGTTATGATTTGGGGAACAG ATGTTCTGAAAAACAGAAGCGTCACAGGCGTCGCCACAAAAAAAAAGAAAGATGCAGTCCCTAAACCACCCCTCTCGCCTCACAAACTAA GCATCGTCAGAGAGTGTTTGTATGACAGAATAGCACAAGAAACTGTGGATGAAACTGAAATTGCACAGAGACTCTCCAAAGTCAACAAGT ACATCTGTGAAAAAATCATGGATATCAATAAATCCTGTAAAAATGAAGAACGAAGGGAAGCAAAATACAATTTGCAATAAACTTTGGATT TTTCATAAAGCTTTCGTGTTTTCCTTGTGTGGCATGTGATTTGCGAGCGATGGTGCCGTCCAAATCAGACCCCACCGTGCATGGTGGTGT GTGTGCAGGGATCCATCGGGTTCTGGGGTCAGCGGCTTGTTCTGAATGTGGACACTCCAAAGACGACAGATGGCTTTGCTGAGACTCAGG AGCAGCCTGGCACTGGTGTCCTTCTGGGAATGGGGAAAACACTCTTCTTGGAGGGGGATAAGGTTGCCTGAGTTGCCTGTCACTTGACTG >In-frame_ARID1A_ENST00000457599_chr1_27024031_+_BEND5_ENST00000371833_chr1_49202124_-_1872nt ATGGCCGCGCAGGTCGCCCCCGCCGCCGCCAGCAGCCTGGGCAACCCGCCGCCGCCGCCGCCCTCGGAGCTGAAGAAAGCCGAGCAGCAG CAGCGGGAGGAGGCGGGGGGCGAGGCGGCGGCGGCGGCAGCGGCCGAGCGCGGGGAAATGAAGGCAGCCGCCGGGCAGGAAAGCGAGGGC CCCGCCGTGGGGCCGCCGCAGCCGCTGGGAAAGGAGCTGCAGGACGGGGCCGAGAGCAATGGGGGTGGCGGCGGCGGCGGAGCCGGCAGC GGCGGCGGGCCCGGCGCGGAGCCGGACCTGAAGAACTCGAACGGGAACGCGGGCCCTAGGCCCGCCCTGAACAATAACCTCACGGAGCCG CCCGGCGGCGGCGGTGGCGGCAGCAGCGATGGGGTGGGGGCGCCTCCTCACTCAGCCGCGGCCGCCTTGCCGCCCCCAGCCTACGGCTTC GGGCAACCCTACGGCCGGAGCCCGTCTGCCGTCGCCGCCGCCGCGGCCGCCGTCTTCCACCAACAACATGGCGGACAACAAAGCCCTGGC CTGGCAGCGCTGCAGAGCGGCGGCGGCGGGGGCCTGGAGCCCTACGCGGGGCCCCAGCAGAACTCTCACGACCACGGCTTCCCCAACCAC CAGTACAACTCCTACTACCCCAACCGCAGCGCCTACCCCCCGCCCGCCCCGGCCTACGCGCTGAGCTCCCCGAGAGGTGGCACTCCGGGC TCCGGCGCGGCGGCGGCTGCCGGCTCCAAGCCGCCTCCCTCCTCCAGCGCCTCCGCCTCCTCGTCGTCTTCGTCCTTCGCTCAGCAGCGC TTCGGGGCCATGGGGGGAGGCGGCCCCTCCGCGGCCGGCGGGGGAACTCCCCAGCCCACCGCCACCCCCACCCTCAACCAACTGCTCACG TCGCCCAGCTCGGCCCGGGGCTACCAGGGCTACCCCGGGGGCGACTACAGTGGCGGGCCCCAGGACGGGGGCGCCGGCAAGGGCCCGGCG GACATGGCCTCGCAGTGTTGGGGGGCTGCGGCGGCGGCAGCTGCGGCGGCGGCCGCCTCGGGAGGGGCCCAACAAAGGAGCCACCACGCG CCCATGAGCCCCGGGAGCAGCGGCGGCGGGGGGCAGCCGCTCGCCCGGACCCCTCAGGTCCATCTGGGAAGCGGGATTTGGGTTGATGAG GAGAAATGGCACCAGCTACAAGTAACCCAAGGAGATTCCAAGTACACGAAGAACTTGGCAGTTATGATTTGGGGAACAGATGTTCTGAAA AACAGAAGCGTCACAGGCGTCGCCACAAAAAAAAAGAAAGATGCAGTCCCTAAACCACCCCTCTCGCCTCACAAACTAAGCATCGTCAGA GAGTGTTTGTATGACAGAATAGCACAAGAAACTGTGGATGAAACTGAAATTGCACAGAGACTCTCCAAAGTCAACAAGTACATCTGTGAA AAAATCATGGATATCAATAAATCCTGTAAAAATGAAGAACGAAGGGAAGCAAAATACAATTTGCAATAAACTTTGGATTTTTCATAAAGC TTTCGTGTTTTCCTTGTGTGGCATGTGATTTGCGAGCGATGGTGCCGTCCAAATCAGACCCCACCGTGCATGGTGGTGTGTGTGCAGGGA TCCATCGGGTTCTGGGGTCAGCGGCTTGTTCTGAATGTGGACACTCCAAAGACGACAGATGGCTTTGCTGAGACTCAGGAGCAGCCTGGC ACTGGTGTCCTTCTGGGAATGGGGAAAACACTCTTCTTGGAGGGGGATAAGGTTGCCTGAGTTGCCTGTCACTTGACTGGGGTTTGAATG |
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FusionGenePPI for ARID1A_BEND5 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
ARID1A | KLF1, GATA1, SMARCB1, SMARCA4, SMARCA2, ING1, SMARCE1, PBRM1, SMARCC2, SMARCC1, PGR, BCL7C, HIC1, CUL2, ARID1B, SMAD2, SMAD3, CARM1, ADNP, RARA, SOX2, CHD7, SMARCD1, TP53, ELAVL1, SIRT7, TFAP4, CUL3, SMARCD2, ACTL6A, SMARCD3, PHF10, ECT2, YAP1, ITCH, NEDD4, SHMT2, MOV10, NXF1, EED, DPF3, DPF2, SS18, UNK, BCL7A, BCL7B, ESR1, NCOA1, RARB, RARG, EWSR1, SNW1, CDC5L, CUL1, SKP1, NFATC1, NFATC2, TOP1, CHEK1, VHL, EYA2, NR3C1, AR, ALDH2, TRIM25 | BEND5 | GRAP2, USP2, CTNNBIP1, GFI1B, USP7, APP, BZRAP1, PRKAB2, UBE2I, EIF3D, BUD31, USP20, GORASP2, FAM161A, VPS25, ZGPAT, ZNF417, RTP5, LCE1B |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for ARID1A_BEND5 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for ARID1A_BEND5 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | ARID1A | C0038356 | Stomach Neoplasms | 3 | CTD_human |
Hgene | ARID1A | C2239176 | Liver carcinoma | 3 | CTD_human |
Hgene | ARID1A | C0001418 | Adenocarcinoma | 1 | CTD_human |
Hgene | ARID1A | C0005695 | Bladder Neoplasm | 1 | CTD_human |
Hgene | ARID1A | C0006413 | Burkitt Lymphoma | 1 | CTD_human |
Hgene | ARID1A | C0007138 | Carcinoma, Transitional Cell | 1 | CTD_human |
Hgene | ARID1A | C0010606 | Adenoid Cystic Carcinoma | 1 | CTD_human |
Hgene | ARID1A | C0014170 | Endometrial Neoplasms | 1 | CTD_human |
Hgene | ARID1A | C0027819 | Neuroblastoma | 1 | CTD_human |
Hgene | ARID1A | C0036920 | Sezary Syndrome | 1 | CTD_human |
Hgene | ARID1A | C0079772 | T-Cell Lymphoma | 1 | CTD_human |
Hgene | ARID1A | C0079773 | Lymphoma, T-Cell, Cutaneous | 1 | CTD_human |
Hgene | ARID1A | C0206698 | Cholangiocarcinoma | 1 | CTD_human |
Hgene | ARID1A | C0265338 | Coffin-Siris syndrome | 1 | CTD_human;ORPHANET |
Hgene | ARID1A | C0279628 | Adenocarcinoma Of Esophagus | 1 | CTD_human |
Hgene | ARID1A | C0920269 | Microsatellite Instability | 1 | CTD_human |
Hgene | ARID1A | C2931822 | Nasopharyngeal carcinoma | 1 | CTD_human |