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Fusion gene ID: 25989 |
FusionGeneSummary for PARD6B_PRPF6 |
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Fusion gene information | Fusion gene name: PARD6B_PRPF6 | Fusion gene ID: 25989 | Hgene | Tgene | Gene symbol | PARD6B | PRPF6 | Gene ID | 84612 | 24148 |
Gene name | par-6 family cell polarity regulator beta | pre-mRNA processing factor 6 | |
Synonyms | PAR6B | ANT-1|ANT1|C20orf14|Prp6|RP60|SNRNP102|TOM|U5-102K|hPrp6 | |
Cytomap | 20q13.13 | 20q13.33 | |
Type of gene | protein-coding | protein-coding | |
Description | partitioning defective 6 homolog betaPAR-6 betapar-6 partitioning defective 6 homolog beta | pre-mRNA-processing factor 6PRP6 homologPRP6 pre-mRNA processing factor 6 homologU5 snRNP-associated 102 kDa proteinU5-102 kDa proteinandrogen receptor N-terminal domain transactivating protein-1p102 U5 small nuclear ribonucleoprotein particle-bindi | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | Q9BYG5 | O94906 | |
Ensembl transtripts involved in fusion gene | ENST00000371610, ENST00000396039, | ENST00000535781, | |
Fusion gene scores | * DoF score | 3 X 2 X 2=12 | 7 X 7 X 2=98 |
# samples | 3 | 6 | |
** MAII score | log2(3/12*10)=1.32192809488736 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(6/98*10)=-0.70781924850669 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: PARD6B [Title/Abstract] AND PRPF6 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | PARD6B | GO:0065003 | protein-containing complex assembly | 12545177 |
Tgene | PRPF6 | GO:0000398 | mRNA splicing, via spliceosome | 28781166 |
Tgene | PRPF6 | GO:0045944 | positive regulation of transcription by RNA polymerase II | 16414017 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | BRCA | TCGA-D8-A1XD-01A | PARD6B | chr20 | 49348389 | + | PRPF6 | chr20 | 62630398 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000371610 | ENST00000535781 | PARD6B | chr20 | 49348389 | + | PRPF6 | chr20 | 62630398 | + |
In-frame | ENST00000396039 | ENST00000535781 | PARD6B | chr20 | 49348389 | + | PRPF6 | chr20 | 62630398 | + |
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FusionProtFeatures for PARD6B_PRPF6 |
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Hgene | Tgene |
PARD6B | PRPF6 |
Adapter protein involved in asymmetrical cell divisionand cell polarization processes. Probably involved in formation ofepithelial tight junctions. Association with PARD3 may prevent theinteraction of PARD3 with F11R/JAM1, thereby preventing tightjunction assembly. The PARD6-PARD3 complex links GTP-bound Rhosmall GTPases to atypical protein kinase C proteins. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | >PRPF6 | chr20:49348389 | chr20:62630398 | ENST00000535781 | + | 5 | 20 | 384_416 | 257 | 902 | Repeat | Note=HAT 1 |
Tgene | >PRPF6 | chr20:49348389 | chr20:62630398 | ENST00000535781 | + | 5 | 20 | 418_444 | 257 | 902 | Repeat | Note=HAT 2 |
Tgene | >PRPF6 | chr20:49348389 | chr20:62630398 | ENST00000535781 | + | 5 | 20 | 445_476 | 257 | 902 | Repeat | Note=HAT 3 |
Tgene | >PRPF6 | chr20:49348389 | chr20:62630398 | ENST00000535781 | + | 5 | 20 | 554_586 | 257 | 902 | Repeat | Note=HAT 4 |
Tgene | >PRPF6 | chr20:49348389 | chr20:62630398 | ENST00000535781 | + | 5 | 20 | 588_620 | 257 | 902 | Repeat | Note=HAT 5 |
Tgene | >PRPF6 | chr20:49348389 | chr20:62630398 | ENST00000535781 | + | 5 | 20 | 622_654 | 257 | 902 | Repeat | Note=HAT 6 |
Tgene | >PRPF6 | chr20:49348389 | chr20:62630398 | ENST00000535781 | + | 5 | 20 | 689_721 | 257 | 902 | Repeat | Note=HAT 7 |
Tgene | >PRPF6 | chr20:49348389 | chr20:62630398 | ENST00000535781 | + | 5 | 20 | 723_755 | 257 | 902 | Repeat | Note=HAT 8 |
Tgene | >PRPF6 | chr20:49348389 | chr20:62630398 | ENST00000535781 | + | 5 | 20 | 855_887 | 257 | 902 | Repeat | Note=HAT 9 |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >PARD6B | chr20:49348389 | chr20:62630398 | ENST00000371610 | + | 1 | 3 | 133_150 | 22 | 373 | Domain | Note=Pseudo-CRIB |
Hgene | >PARD6B | chr20:49348389 | chr20:62630398 | ENST00000371610 | + | 1 | 3 | 157_250 | 22 | 373 | Domain | PDZ |
Hgene | >PARD6B | chr20:49348389 | chr20:62630398 | ENST00000371610 | + | 1 | 3 | 16_96 | 22 | 373 | Domain | PB1 |
Hgene | >PARD6B | chr20:49348389 | chr20:62630398 | ENST00000396039 | + | 1 | 3 | 133_150 | 22 | 116 | Domain | Note=Pseudo-CRIB |
Hgene | >PARD6B | chr20:49348389 | chr20:62630398 | ENST00000396039 | + | 1 | 3 | 157_250 | 22 | 116 | Domain | PDZ |
Hgene | >PARD6B | chr20:49348389 | chr20:62630398 | ENST00000396039 | + | 1 | 3 | 16_96 | 22 | 116 | Domain | PB1 |
Tgene | PRPF6 | chr20:49348389 | chr20:62630398 | ENST00000535781 | + | 5 | 20 | 67_72 | 257 | 902 | Compositional bias | Note=Poly-Asp |
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FusionGeneSequence for PARD6B_PRPF6 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_PARD6B_ENST00000371610_chr20_49348389_+_PRPF6_ENST00000535781_chr20_62630398_+_667aa MNRSHRHGAGSGCLGTMEVKSKVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKL QVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEE PEDARIMLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITSLRANGVEINREQ WIQDAEECDRAGSVATCQAVMRAVIGIGIEEEDRKHTWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEA LLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQVFMKSVKLEWVQDNIRAAQDLCEEALRHYEDFPKLWMMKGQIEEQKEMM EKAREAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANTLMAKALQECPNSGILWS EAIFLEARPQRRTKSVDALKKCEHDPHVLLAVAKLFWSQRKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKRCESAE >In-frame_PARD6B_ENST00000396039_chr20_49348389_+_PRPF6_ENST00000535781_chr20_62630398_+_667aa MNRSHRHGAGSGCLGTMEVKSKVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKL QVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEE PEDARIMLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITSLRANGVEINREQ WIQDAEECDRAGSVATCQAVMRAVIGIGIEEEDRKHTWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEA LLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQVFMKSVKLEWVQDNIRAAQDLCEEALRHYEDFPKLWMMKGQIEEQKEMM EKAREAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANTLMAKALQECPNSGILWS EAIFLEARPQRRTKSVDALKKCEHDPHVLLAVAKLFWSQRKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKRCESAE |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_PARD6B_ENST00000371610_chr20_49348389_+_PRPF6_ENST00000535781_chr20_62630398_+_2001nt ATGAACCGCAGCCACCGGCACGGGGCGGGCAGCGGCTGCCTGGGCACTATGGAGGTGAAGAGCAAGGTGTCTGACTCCGTGAGTGGACAG ACCGTCGTTGACCCCAAAGGCTACCTGACGGATTTAAATTCCATGATCCCGACACACGGAGGAGACATCAATGATATCAAGAAGGCGCGA CTGCTCCTCAAGTCTGTTCGGGAGACGAACCCTCATCACCCGCCAGCCTGGATTGCATCAGCCCGCCTGGAAGAAGTCACTGGGAAGCTA CAAGTAGCTCGGAACCTTATCATGAAGGGGACGGAGATGTGCCCCAAGAGTGAAGATGTCTGGCTGGAAGCAGCCAGGTTGCAGCCTGGG GACACAGCCAAGGCCGTGGTAGCCCAAGCTGTCCGTCATCTCCCACAGTCTGTCAGGATTTACATCAGAGCCGCAGAGCTGGAAACGGAC ATTCGTGCAAAGAAGCGGGTTCTTCGGAAAGCCCTCGAGCATGTTCCAAACTCGGTTCGCTTGTGGAAAGCAGCCGTTGAGCTGGAAGAA CCTGAAGATGCTAGAATCATGCTGAGCCGAGCTGTGGAGTGCTGCCCCACCAGCGTGGAGCTCTGGCTTGCTCTGGCAAGGCTGGAGACC TATGAAAATGCCCGCAAGGTCTTGAACAAGGCGCGGGAGAACATTCCTACAGACCGACATATCTGGATCACGGCTGCTAAGCTGGAGGAA GCCAATGGGAACACGCAGATGGTGGAGAAGATCATCGACCGAGCCATCACCTCGCTGCGGGCCAACGGTGTGGAGATCAACCGTGAGCAG TGGATCCAGGATGCCGAGGAATGTGACAGGGCTGGGAGTGTGGCCACCTGCCAGGCCGTCATGCGTGCCGTGATTGGGATTGGGATTGAG GAGGAAGATCGGAAGCATACCTGGATGGAGGATGCTGACAGTTGTGTAGCCCACAATGCCCTGGAGTGTGCACGAGCCATCTACGCCTAC GCCCTGCAGGTGTTCCCCAGCAAGAAGAGTGTGTGGCTGCGCGCCGCGTACTTCGAGAAGAACCATGGCACTCGGGAGTCCCTGGAAGCA CTCCTGCAGAGGGCTGTGGCCCACTGCCCCAAAGCAGAGGTGCTGTGGCTCATGGGCGCCAAGTCCAAGTGGCTGGCAGGGGATGTGCCT GCAGCAAGGAGCATCCTGGCCCTGGCCTTCCAGGTGTTCATGAAGTCTGTGAAGCTGGAGTGGGTGCAAGACAACATCAGGGCAGCCCAA GATCTGTGCGAGGAGGCCCTGCGGCACTATGAGGACTTCCCCAAGCTGTGGATGATGAAGGGGCAGATCGAGGAGCAGAAGGAGATGATG GAGAAGGCGCGGGAAGCCTATAACCAGGGGTTGAAGAAGTGTCCCCACTCCACACCCCTGTGGCTTTTGCTCTCTCGGCTGGAGGAGAAG ATTGGGCAGCTTACTCGAGCACGGGCCATTTTGGAAAAGTCTCGTCTGAAGAACCCAAAGAACCCTGGGCTGTGGTTGGAGTCCGTGCGG CTGGAGTACCGTGCGGGGCTGAAGAACATCGCAAATACACTCATGGCCAAGGCGCTGCAGGAGTGCCCCAACTCCGGTATCCTGTGGTCT GAGGCCATCTTCCTCGAGGCAAGGCCCCAGAGGAGGACCAAGAGCGTGGATGCCCTGAAGAAGTGTGAGCATGACCCCCATGTGCTCCTG GCCGTGGCCAAGCTGTTTTGGAGTCAGCGGAAGATCACCAAGGCCAGGGAGTGGTTCCACCGCACTGTGAAGATTGACTCGGACCTGGGG GATGCCTGGGCCTTCTTCTACAAGTTTGAGCTGCAGCATGGCACTGAGGAGCAGCAGGAGGAGGTGAGGAAGCGCTGTGAGAGTGCAGAG CCTCGGCATGGGGAGCTGTGGTGCGCCGTGTCCAAGGACATCGCCAACTGGCAGAAGAAGATCGGGGACATCCTTAGGCTGGTGGCCGGC >In-frame_PARD6B_ENST00000396039_chr20_49348389_+_PRPF6_ENST00000535781_chr20_62630398_+_2001nt ATGAACCGCAGCCACCGGCACGGGGCGGGCAGCGGCTGCCTGGGCACTATGGAGGTGAAGAGCAAGGTGTCTGACTCCGTGAGTGGACAG ACCGTCGTTGACCCCAAAGGCTACCTGACGGATTTAAATTCCATGATCCCGACACACGGAGGAGACATCAATGATATCAAGAAGGCGCGA CTGCTCCTCAAGTCTGTTCGGGAGACGAACCCTCATCACCCGCCAGCCTGGATTGCATCAGCCCGCCTGGAAGAAGTCACTGGGAAGCTA CAAGTAGCTCGGAACCTTATCATGAAGGGGACGGAGATGTGCCCCAAGAGTGAAGATGTCTGGCTGGAAGCAGCCAGGTTGCAGCCTGGG GACACAGCCAAGGCCGTGGTAGCCCAAGCTGTCCGTCATCTCCCACAGTCTGTCAGGATTTACATCAGAGCCGCAGAGCTGGAAACGGAC ATTCGTGCAAAGAAGCGGGTTCTTCGGAAAGCCCTCGAGCATGTTCCAAACTCGGTTCGCTTGTGGAAAGCAGCCGTTGAGCTGGAAGAA CCTGAAGATGCTAGAATCATGCTGAGCCGAGCTGTGGAGTGCTGCCCCACCAGCGTGGAGCTCTGGCTTGCTCTGGCAAGGCTGGAGACC TATGAAAATGCCCGCAAGGTCTTGAACAAGGCGCGGGAGAACATTCCTACAGACCGACATATCTGGATCACGGCTGCTAAGCTGGAGGAA GCCAATGGGAACACGCAGATGGTGGAGAAGATCATCGACCGAGCCATCACCTCGCTGCGGGCCAACGGTGTGGAGATCAACCGTGAGCAG TGGATCCAGGATGCCGAGGAATGTGACAGGGCTGGGAGTGTGGCCACCTGCCAGGCCGTCATGCGTGCCGTGATTGGGATTGGGATTGAG GAGGAAGATCGGAAGCATACCTGGATGGAGGATGCTGACAGTTGTGTAGCCCACAATGCCCTGGAGTGTGCACGAGCCATCTACGCCTAC GCCCTGCAGGTGTTCCCCAGCAAGAAGAGTGTGTGGCTGCGCGCCGCGTACTTCGAGAAGAACCATGGCACTCGGGAGTCCCTGGAAGCA CTCCTGCAGAGGGCTGTGGCCCACTGCCCCAAAGCAGAGGTGCTGTGGCTCATGGGCGCCAAGTCCAAGTGGCTGGCAGGGGATGTGCCT GCAGCAAGGAGCATCCTGGCCCTGGCCTTCCAGGTGTTCATGAAGTCTGTGAAGCTGGAGTGGGTGCAAGACAACATCAGGGCAGCCCAA GATCTGTGCGAGGAGGCCCTGCGGCACTATGAGGACTTCCCCAAGCTGTGGATGATGAAGGGGCAGATCGAGGAGCAGAAGGAGATGATG GAGAAGGCGCGGGAAGCCTATAACCAGGGGTTGAAGAAGTGTCCCCACTCCACACCCCTGTGGCTTTTGCTCTCTCGGCTGGAGGAGAAG ATTGGGCAGCTTACTCGAGCACGGGCCATTTTGGAAAAGTCTCGTCTGAAGAACCCAAAGAACCCTGGGCTGTGGTTGGAGTCCGTGCGG CTGGAGTACCGTGCGGGGCTGAAGAACATCGCAAATACACTCATGGCCAAGGCGCTGCAGGAGTGCCCCAACTCCGGTATCCTGTGGTCT GAGGCCATCTTCCTCGAGGCAAGGCCCCAGAGGAGGACCAAGAGCGTGGATGCCCTGAAGAAGTGTGAGCATGACCCCCATGTGCTCCTG GCCGTGGCCAAGCTGTTTTGGAGTCAGCGGAAGATCACCAAGGCCAGGGAGTGGTTCCACCGCACTGTGAAGATTGACTCGGACCTGGGG GATGCCTGGGCCTTCTTCTACAAGTTTGAGCTGCAGCATGGCACTGAGGAGCAGCAGGAGGAGGTGAGGAAGCGCTGTGAGAGTGCAGAG CCTCGGCATGGGGAGCTGTGGTGCGCCGTGTCCAAGGACATCGCCAACTGGCAGAAGAAGATCGGGGACATCCTTAGGCTGGTGGCCGGC |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_PARD6B_ENST00000371610_chr20_49348389_+_PRPF6_ENST00000535781_chr20_62630398_+_2347nt GAGGGAGGGAGCTGCTTCCCCGCCTGCCGCGCCACCAGTCCGACCCTCGGTCCCGCCGTGTGAGCAGCTGGTGGAGTGGAGCTCAGCGCG GACGCCGGAGCTGCGGCCGCCCCCTCTGCAGGTGCCTGTGAGGAGGCGCCCGGGCCGCAACCGCTTTCCGAGATCCCCAGTCGCGCACTC GCTCCCCGCGCTCCTGAGGGGCCGCCCGGCCGGAGGAGGCCGTCGCGGGGCTCGGCGTTCAGCATGAACCGCAGCCACCGGCACGGGGCG GGCAGCGGCTGCCTGGGCACTATGGAGGTGAAGAGCAAGGTGTCTGACTCCGTGAGTGGACAGACCGTCGTTGACCCCAAAGGCTACCTG ACGGATTTAAATTCCATGATCCCGACACACGGAGGAGACATCAATGATATCAAGAAGGCGCGACTGCTCCTCAAGTCTGTTCGGGAGACG AACCCTCATCACCCGCCAGCCTGGATTGCATCAGCCCGCCTGGAAGAAGTCACTGGGAAGCTACAAGTAGCTCGGAACCTTATCATGAAG GGGACGGAGATGTGCCCCAAGAGTGAAGATGTCTGGCTGGAAGCAGCCAGGTTGCAGCCTGGGGACACAGCCAAGGCCGTGGTAGCCCAA GCTGTCCGTCATCTCCCACAGTCTGTCAGGATTTACATCAGAGCCGCAGAGCTGGAAACGGACATTCGTGCAAAGAAGCGGGTTCTTCGG AAAGCCCTCGAGCATGTTCCAAACTCGGTTCGCTTGTGGAAAGCAGCCGTTGAGCTGGAAGAACCTGAAGATGCTAGAATCATGCTGAGC CGAGCTGTGGAGTGCTGCCCCACCAGCGTGGAGCTCTGGCTTGCTCTGGCAAGGCTGGAGACCTATGAAAATGCCCGCAAGGTCTTGAAC AAGGCGCGGGAGAACATTCCTACAGACCGACATATCTGGATCACGGCTGCTAAGCTGGAGGAAGCCAATGGGAACACGCAGATGGTGGAG AAGATCATCGACCGAGCCATCACCTCGCTGCGGGCCAACGGTGTGGAGATCAACCGTGAGCAGTGGATCCAGGATGCCGAGGAATGTGAC AGGGCTGGGAGTGTGGCCACCTGCCAGGCCGTCATGCGTGCCGTGATTGGGATTGGGATTGAGGAGGAAGATCGGAAGCATACCTGGATG GAGGATGCTGACAGTTGTGTAGCCCACAATGCCCTGGAGTGTGCACGAGCCATCTACGCCTACGCCCTGCAGGTGTTCCCCAGCAAGAAG AGTGTGTGGCTGCGCGCCGCGTACTTCGAGAAGAACCATGGCACTCGGGAGTCCCTGGAAGCACTCCTGCAGAGGGCTGTGGCCCACTGC CCCAAAGCAGAGGTGCTGTGGCTCATGGGCGCCAAGTCCAAGTGGCTGGCAGGGGATGTGCCTGCAGCAAGGAGCATCCTGGCCCTGGCC TTCCAGGTGTTCATGAAGTCTGTGAAGCTGGAGTGGGTGCAAGACAACATCAGGGCAGCCCAAGATCTGTGCGAGGAGGCCCTGCGGCAC TATGAGGACTTCCCCAAGCTGTGGATGATGAAGGGGCAGATCGAGGAGCAGAAGGAGATGATGGAGAAGGCGCGGGAAGCCTATAACCAG GGGTTGAAGAAGTGTCCCCACTCCACACCCCTGTGGCTTTTGCTCTCTCGGCTGGAGGAGAAGATTGGGCAGCTTACTCGAGCACGGGCC ATTTTGGAAAAGTCTCGTCTGAAGAACCCAAAGAACCCTGGGCTGTGGTTGGAGTCCGTGCGGCTGGAGTACCGTGCGGGGCTGAAGAAC ATCGCAAATACACTCATGGCCAAGGCGCTGCAGGAGTGCCCCAACTCCGGTATCCTGTGGTCTGAGGCCATCTTCCTCGAGGCAAGGCCC CAGAGGAGGACCAAGAGCGTGGATGCCCTGAAGAAGTGTGAGCATGACCCCCATGTGCTCCTGGCCGTGGCCAAGCTGTTTTGGAGTCAG CGGAAGATCACCAAGGCCAGGGAGTGGTTCCACCGCACTGTGAAGATTGACTCGGACCTGGGGGATGCCTGGGCCTTCTTCTACAAGTTT GAGCTGCAGCATGGCACTGAGGAGCAGCAGGAGGAGGTGAGGAAGCGCTGTGAGAGTGCAGAGCCTCGGCATGGGGAGCTGTGGTGCGCC GTGTCCAAGGACATCGCCAACTGGCAGAAGAAGATCGGGGACATCCTTAGGCTGGTGGCCGGCCGCATCAAGAACACCTTCTGATTGAGC GGTTGCCATGGCCGGTCTCCGTGGGGCAGGGTTGGGCCGCATGTGGAAGGGCTCTGAGCTGTGTCCTCCTTCATTAAAAGTTTTTATGTC >In-frame_PARD6B_ENST00000396039_chr20_49348389_+_PRPF6_ENST00000535781_chr20_62630398_+_2226nt GTGCCTGTGAGGAGGCGCCCGGGCCGCAACCGCTTTCCGAGATCCCCAGTCGCGCACTCGCTCCCCGCGCTCCTGAGGGGCCGCCCGGCC GGAGGAGGCCGTCGCGGGGCTCGGCGTTCAGCATGAACCGCAGCCACCGGCACGGGGCGGGCAGCGGCTGCCTGGGCACTATGGAGGTGA AGAGCAAGGTGTCTGACTCCGTGAGTGGACAGACCGTCGTTGACCCCAAAGGCTACCTGACGGATTTAAATTCCATGATCCCGACACACG GAGGAGACATCAATGATATCAAGAAGGCGCGACTGCTCCTCAAGTCTGTTCGGGAGACGAACCCTCATCACCCGCCAGCCTGGATTGCAT CAGCCCGCCTGGAAGAAGTCACTGGGAAGCTACAAGTAGCTCGGAACCTTATCATGAAGGGGACGGAGATGTGCCCCAAGAGTGAAGATG TCTGGCTGGAAGCAGCCAGGTTGCAGCCTGGGGACACAGCCAAGGCCGTGGTAGCCCAAGCTGTCCGTCATCTCCCACAGTCTGTCAGGA TTTACATCAGAGCCGCAGAGCTGGAAACGGACATTCGTGCAAAGAAGCGGGTTCTTCGGAAAGCCCTCGAGCATGTTCCAAACTCGGTTC GCTTGTGGAAAGCAGCCGTTGAGCTGGAAGAACCTGAAGATGCTAGAATCATGCTGAGCCGAGCTGTGGAGTGCTGCCCCACCAGCGTGG AGCTCTGGCTTGCTCTGGCAAGGCTGGAGACCTATGAAAATGCCCGCAAGGTCTTGAACAAGGCGCGGGAGAACATTCCTACAGACCGAC ATATCTGGATCACGGCTGCTAAGCTGGAGGAAGCCAATGGGAACACGCAGATGGTGGAGAAGATCATCGACCGAGCCATCACCTCGCTGC GGGCCAACGGTGTGGAGATCAACCGTGAGCAGTGGATCCAGGATGCCGAGGAATGTGACAGGGCTGGGAGTGTGGCCACCTGCCAGGCCG TCATGCGTGCCGTGATTGGGATTGGGATTGAGGAGGAAGATCGGAAGCATACCTGGATGGAGGATGCTGACAGTTGTGTAGCCCACAATG CCCTGGAGTGTGCACGAGCCATCTACGCCTACGCCCTGCAGGTGTTCCCCAGCAAGAAGAGTGTGTGGCTGCGCGCCGCGTACTTCGAGA AGAACCATGGCACTCGGGAGTCCCTGGAAGCACTCCTGCAGAGGGCTGTGGCCCACTGCCCCAAAGCAGAGGTGCTGTGGCTCATGGGCG CCAAGTCCAAGTGGCTGGCAGGGGATGTGCCTGCAGCAAGGAGCATCCTGGCCCTGGCCTTCCAGGTGTTCATGAAGTCTGTGAAGCTGG AGTGGGTGCAAGACAACATCAGGGCAGCCCAAGATCTGTGCGAGGAGGCCCTGCGGCACTATGAGGACTTCCCCAAGCTGTGGATGATGA AGGGGCAGATCGAGGAGCAGAAGGAGATGATGGAGAAGGCGCGGGAAGCCTATAACCAGGGGTTGAAGAAGTGTCCCCACTCCACACCCC TGTGGCTTTTGCTCTCTCGGCTGGAGGAGAAGATTGGGCAGCTTACTCGAGCACGGGCCATTTTGGAAAAGTCTCGTCTGAAGAACCCAA AGAACCCTGGGCTGTGGTTGGAGTCCGTGCGGCTGGAGTACCGTGCGGGGCTGAAGAACATCGCAAATACACTCATGGCCAAGGCGCTGC AGGAGTGCCCCAACTCCGGTATCCTGTGGTCTGAGGCCATCTTCCTCGAGGCAAGGCCCCAGAGGAGGACCAAGAGCGTGGATGCCCTGA AGAAGTGTGAGCATGACCCCCATGTGCTCCTGGCCGTGGCCAAGCTGTTTTGGAGTCAGCGGAAGATCACCAAGGCCAGGGAGTGGTTCC ACCGCACTGTGAAGATTGACTCGGACCTGGGGGATGCCTGGGCCTTCTTCTACAAGTTTGAGCTGCAGCATGGCACTGAGGAGCAGCAGG AGGAGGTGAGGAAGCGCTGTGAGAGTGCAGAGCCTCGGCATGGGGAGCTGTGGTGCGCCGTGTCCAAGGACATCGCCAACTGGCAGAAGA AGATCGGGGACATCCTTAGGCTGGTGGCCGGCCGCATCAAGAACACCTTCTGATTGAGCGGTTGCCATGGCCGGTCTCCGTGGGGCAGGG |
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FusionGenePPI for PARD6B_PRPF6 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
PARD6B | RHOQ, CDC42, PARD3, PRKCZ, RAC1, YWHAH, PRKCI, LLGL1, LLGL2, PARD6A, DMBT1, PARD6G, APP, NPM1, WDR83, CRB3, GOLGA2, RHOJ, GMCL1, CEP76, PTPN14, ZZEF1, WWC1, ATAD3C, ARL10, KBTBD7, KBTBD6, PTPN21, RASSF8, HECTD3, CLPTM1, DR1, FOXM1, GNS, HNRNPA1, INPP5B, KIFC1, MYO10, P4HA1, PHKA1, PPP1CA, PSMD5, ROBO1, ROBO2, ICAM5, TP53BP2, SF1, RBM10, AGPS, MKNK1, CCNK, RECQL5, YWHAQ, PROSC, DLGAP4, AVL9, UBR2, LTN1, GOLIM4, VPS28, EPB41L4B, AGGF1, IARS2, EEFSEC, PDF, IFT22, RNF170, CDCA3, ANKRD32, MSANTD4, LRCH3, KIAA2013, MRPL55, EME1, TMEM92 | PRPF6 | TXNL4B, CD2BP2, SNRNP40, RNPS1, RNU11, ARAF, RAF1, TIMM44, PRPF6, YWHAB, AR, USP39, PRPF4, MEPCE, GIGYF2, SMARCA2, TADA2A, MYC, SF3A2, SIRT7, PRPF31, SART1, TXNL4A, EFTUD2, SNRNP200, PRPF8, PRPF3, SNRPD1, SNRPD3, SF3B3, SNRPD2, SNRPA1, SRSF7, NHP2L1, HNRNPM, U2AF1, SRSF5, U2AF2, PRPF19, EIF4A3, ACIN1, SRRM2, SAP18, SON, TPBG, THRAP3, NCSTN, NPM1, RPS13, RPS24, DDX18, RBM14, SUPT16H, TRA2A, ZNF326, NOTCH1, IK, CTNNB1, MMS19, HDAC11, PRPF4B, PARK2, RPA1, RPA2, RPA3, PASK, CUL7, OBSL1, CCDC8, EED, GCFC2, DDX23, TSSC4, BSG, LUC7L2, SF3A1, SNRPA, SF3A3, RNU12, NTRK1, SCARNA22, TP53, KIF21B, RAB4B, SNW1, CDC5L, MEX3C, RC3H1, ZNF746, SNRPG, SNRPE, SNRPN, SNRPF, KIAA1143, GPR156, RBM42, SMU1, RIOK1, ZNHIT2, AAR2, EAPP, DLST, PDHA1, FOXA1, TRIM25, BRCA1, LMNA |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Hgene | PARD6B | chr20:49348389 | chr20:62630398 | ENST00000371610 | + | 1 | 3 | 126_253 | 22 | 373 | PARD3 and CDC42 |
Hgene | PARD6B | chr20:49348389 | chr20:62630398 | ENST00000396039 | + | 1 | 3 | 126_253 | 22 | 116 | PARD3 and CDC42 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for PARD6B_PRPF6 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for PARD6B_PRPF6 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | PRPF6 | C3151434 | RETINITIS PIGMENTOSA 60 | 1 | UNIPROT |