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Fusion gene ID: 25781 |
FusionGeneSummary for PAFAH1B2_CSN2 |
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Fusion gene information | Fusion gene name: PAFAH1B2_CSN2 | Fusion gene ID: 25781 | Hgene | Tgene | Gene symbol | PAFAH1B2 | CSN2 | Gene ID | 5049 | 9318 |
Gene name | platelet activating factor acetylhydrolase 1b catalytic subunit 2 | COP9 signalosome subunit 2 | |
Synonyms | HEL-S-303 | ALIEN|CSN2|SGN2|TRIP15 | |
Cytomap | 11q23.3 | 15q21.1 | |
Type of gene | protein-coding | protein-coding | |
Description | platelet-activating factor acetylhydrolase IB subunit betaPAF acetylhydrolase 30 kDa subunitPAF-AH 30 kDa subunitPAF-AH subunit betaPAF-AH1b alpha 2 subunitPAFAH subunit betaepididymis secretory protein Li 303intracellular platelet-activating facto | COP9 signalosome complex subunit 2COP9 constitutive photomorphogenic homolog subunit 2JAB1-containing signalosome subunit 2TR-interacting protein 15TRIP-15alien homologsignalosome subunit 2thyroid receptor-interacting protein 15 | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | P68402 | P05814 | |
Ensembl transtripts involved in fusion gene | ENST00000419197, ENST00000526888, ENST00000527958, ENST00000529887, ENST00000530272, | ENST00000353151, | |
Fusion gene scores | * DoF score | 7 X 5 X 4=140 | 14 X 11 X 2=308 |
# samples | 7 | 3 | |
** MAII score | log2(7/140*10)=-1 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(3/308*10)=-3.35989594508638 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: PAFAH1B2 [Title/Abstract] AND CSN2 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | CSN2 | GO:0000338 | protein deneddylation | 19141280 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | BRCA | TCGA-AO-A1KO-01A | PAFAH1B2 | chr11 | 117008086 | + | CSN2 | chr4 | 70821167 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-3UTR | ENST00000419197 | ENST00000353151 | PAFAH1B2 | chr11 | 117008086 | + | CSN2 | chr4 | 70821167 | - |
intron-3UTR | ENST00000526888 | ENST00000353151 | PAFAH1B2 | chr11 | 117008086 | + | CSN2 | chr4 | 70821167 | - |
intron-3UTR | ENST00000527958 | ENST00000353151 | PAFAH1B2 | chr11 | 117008086 | + | CSN2 | chr4 | 70821167 | - |
intron-3UTR | ENST00000529887 | ENST00000353151 | PAFAH1B2 | chr11 | 117008086 | + | CSN2 | chr4 | 70821167 | - |
intron-3UTR | ENST00000530272 | ENST00000353151 | PAFAH1B2 | chr11 | 117008086 | + | CSN2 | chr4 | 70821167 | - |
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FusionProtFeatures for PAFAH1B2_CSN2 |
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Hgene | Tgene |
PAFAH1B2 | CSN2 |
Important role in determination of the surfaceproperties of the casein micelles. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for PAFAH1B2_CSN2 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for PAFAH1B2_CSN2 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
PAFAH1B2 | PAFAH1B3, ACIN1, CCT3, PINX1, PPP1R12C, REXO1, TIMM50, ZFP36L1, PARK2, RPLP0, PAFAH1B1, CDK2, FN1, BAG3, HECW2, GINS3, HNRNPA2B1, LDHB, NAE1, ABHD14A, BZW2, EIF6, GSS, MSN, NAPRT, PDIA4, PPP5C, PROSC, RAP1GDS1, TATDN1, TRIP6, TUFM, YWHAB, YWHAE, YWHAG, C14orf166, FAM98B, ARFIP1, EIF4H, IDE, OGT, PRRC1, PSMG2, RHOA, TPD52L2, PSMG1, RTCB, SHMT2, VARS, WDR4, CRK, STAT3, NDEL1 | CSN2 | CDC42, GRB2, NFYC, RAC1, TOLLIP, PLK1, ARRB1, ARRB2, CUL1, CUL4B, COPS7A, CSNK2A1, CDK1, HTRA2, NEK2, AURKA, CSNK2B, FHL2, NEK9, CORO2A, PPP3CC |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for PAFAH1B2_CSN2 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for PAFAH1B2_CSN2 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | CSN2 | C0024667 | Animal Mammary Neoplasms | 2 | CTD_human |
Tgene | CSN2 | C0024668 | Mammary Neoplasms, Experimental | 2 | CTD_human |