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Fusion gene ID: 25740 |
FusionGeneSummary for PACS1_ZDHHC24 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: PACS1_ZDHHC24 | Fusion gene ID: 25740 | Hgene | Tgene | Gene symbol | PACS1 | ZDHHC24 | Gene ID | 55690 | 254359 |
| Gene name | phosphofurin acidic cluster sorting protein 1 | zinc finger DHHC-type containing 24 | |
| Synonyms | MRD17|SHMS | - | |
| Cytomap | 11q13.1-q13.2 | 11q13.2 | |
| Type of gene | protein-coding | protein-coding | |
| Description | phosphofurin acidic cluster sorting protein 1PACS-1cytosolic sorting protein PACS-1 | probable palmitoyltransferase ZDHHC24DHHC-24zinc finger DHHC domain-containing protein 24zinc finger, DHHC domain containing 24 | |
| Modification date | 20180523 | 20180523 | |
| UniProtAcc | Q6VY07 | Q6UX98 | |
| Ensembl transtripts involved in fusion gene | ENST00000320580, ENST00000529757, ENST00000524815, | ENST00000526986, ENST00000310442, ENST00000525925, | |
| Fusion gene scores | * DoF score | 12 X 5 X 8=480 | 2 X 2 X 2=8 |
| # samples | 14 | 4 | |
| ** MAII score | log2(14/480*10)=-1.77760757866355 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(4/8*10)=2.32192809488736 | |
| Context | PubMed: PACS1 [Title/Abstract] AND ZDHHC24 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | BLCA | TCGA-DK-A3X1-01A | PACS1 | chr11 | 65838313 | + | ZDHHC24 | chr11 | 66311452 | - |
| TCGA | LD | BRCA | TCGA-BH-A0BV-01A | PACS1 | chr11 | 65838313 | + | ZDHHC24 | chr11 | 66311452 | - |
| TCGA | LD | BRCA | TCGA-C8-A135-01A | PACS1 | chr11 | 65838313 | + | ZDHHC24 | chr11 | 66311452 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| Frame-shift | ENST00000320580 | ENST00000526986 | PACS1 | chr11 | 65838313 | + | ZDHHC24 | chr11 | 66311452 | - |
| In-frame | ENST00000320580 | ENST00000310442 | PACS1 | chr11 | 65838313 | + | ZDHHC24 | chr11 | 66311452 | - |
| 5CDS-5UTR | ENST00000320580 | ENST00000525925 | PACS1 | chr11 | 65838313 | + | ZDHHC24 | chr11 | 66311452 | - |
| intron-3CDS | ENST00000529757 | ENST00000526986 | PACS1 | chr11 | 65838313 | + | ZDHHC24 | chr11 | 66311452 | - |
| intron-3CDS | ENST00000529757 | ENST00000310442 | PACS1 | chr11 | 65838313 | + | ZDHHC24 | chr11 | 66311452 | - |
| intron-5UTR | ENST00000529757 | ENST00000525925 | PACS1 | chr11 | 65838313 | + | ZDHHC24 | chr11 | 66311452 | - |
| intron-3CDS | ENST00000524815 | ENST00000526986 | PACS1 | chr11 | 65838313 | + | ZDHHC24 | chr11 | 66311452 | - |
| intron-3CDS | ENST00000524815 | ENST00000310442 | PACS1 | chr11 | 65838313 | + | ZDHHC24 | chr11 | 66311452 | - |
| intron-5UTR | ENST00000524815 | ENST00000525925 | PACS1 | chr11 | 65838313 | + | ZDHHC24 | chr11 | 66311452 | - |
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FusionProtFeatures for PACS1_ZDHHC24 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| PACS1 | ZDHHC24 |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for PACS1_ZDHHC24 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| >In-frame_PACS1_ENST00000320580_chr11_65838313_+_ZDHHC24_ENST00000310442_chr11_66311452_-_310aa MAERGGAGGGPGGAGGGSGQRGSGVAQSPQQPPPQQQQQQPPQQPTPPKLAQATSSSSSTSAAAASSSSSSTSTSMAVAVASGSAPPGGP GPGRTPAPVQMNLYATWEVDRSSSSCVPSYCYQCQSQVPPRSGHCSACRVCILRRDHHCRLLGRCVGFGNYRPFLCLLLHAAGVLLHVSV LLGPALSALLRAHTPLHMAALLLLPWLMLLTGRVSLAQFALAFVTDTCVAGALLCGAGLLFHGMLLLRGQTTWEWARGQHSYDLGPCHNL >In-frame_PACS1_ENST00000320580_chr11_65838313_+_ZDHHC24_ENST00000310442_chr11_66311452_-_310aa MAERGGAGGGPGGAGGGSGQRGSGVAQSPQQPPPQQQQQQPPQQPTPPKLAQATSSSSSTSAAAASSSSSSTSTSMAVAVASGSAPPGGP GPGRTPAPVQMNLYATWEVDRSSSSCVPSYCYQCQSQVPPRSGHCSACRVCILRRDHHCRLLGRCVGFGNYRPFLCLLLHAAGVLLHVSV LLGPALSALLRAHTPLHMAALLLLPWLMLLTGRVSLAQFALAFVTDTCVAGALLCGAGLLFHGMLLLRGQTTWEWARGQHSYDLGPCHNL |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| >In-frame_PACS1_ENST00000320580_chr11_65838313_+_ZDHHC24_ENST00000310442_chr11_66311452_-_930nt ATGGCGGAACGCGGAGGGGCGGGCGGTGGTCCCGGAGGCGCCGGGGGCGGCAGCGGCCAGCGGGGATCCGGGGTCGCCCAGTCCCCTCAG CAGCCGCCGCCGCAGCAGCAGCAGCAGCAGCCGCCGCAGCAGCCGACGCCCCCCAAGCTGGCCCAGGCCACCTCGTCGTCCTCGTCCACC TCGGCGGCGGCTGCCTCCTCCTCGTCCTCGTCTACCTCCACCTCCATGGCCGTGGCGGTGGCCTCGGGCTCCGCGCCTCCCGGTGGCCCG GGGCCAGGCCGCACCCCCGCCCCGGTGCAGATGAACCTGTACGCCACCTGGGAGGTGGACCGGAGCTCGTCCAGCTGCGTGCCTAGTTAC TGCTACCAATGCCAAAGCCAGGTGCCGCCACGCAGCGGACACTGCTCTGCCTGCCGCGTCTGCATCCTGCGTCGGGACCACCACTGCCGC CTGCTGGGCCGCTGCGTGGGCTTCGGCAACTACCGGCCCTTCCTGTGCCTGCTGCTTCATGCCGCCGGCGTCCTGCTCCACGTCTCTGTG CTGCTGGGCCCTGCACTGTCGGCCCTGCTGCGAGCCCACACGCCCCTCCACATGGCTGCCCTCCTCCTGCTTCCCTGGCTCATGTTGCTC ACAGGCAGAGTGTCTCTGGCACAGTTTGCCTTGGCCTTCGTGACGGACACGTGCGTGGCGGGTGCGCTGCTGTGCGGGGCTGGGCTGCTC TTCCATGGGATGCTGCTGCTGCGGGGCCAGACCACATGGGAGTGGGCTCGGGGCCAGCACTCCTATGACCTGGGTCCCTGCCACAACCTG CAGGCAGCCCTGGGGCCCCGCTGGGCCCTCGTCTGGCTCTGGCCCTTCCTGGCCTCCCCATTGCCTGGGGATGGGATCACCTTCCAGACC >In-frame_PACS1_ENST00000320580_chr11_65838313_+_ZDHHC24_ENST00000310442_chr11_66311452_-_930nt ATGGCGGAACGCGGAGGGGCGGGCGGTGGTCCCGGAGGCGCCGGGGGCGGCAGCGGCCAGCGGGGATCCGGGGTCGCCCAGTCCCCTCAG CAGCCGCCGCCGCAGCAGCAGCAGCAGCAGCCGCCGCAGCAGCCGACGCCCCCCAAGCTGGCCCAGGCCACCTCGTCGTCCTCGTCCACC TCGGCGGCGGCTGCCTCCTCCTCGTCCTCGTCTACCTCCACCTCCATGGCCGTGGCGGTGGCCTCGGGCTCCGCGCCTCCCGGTGGCCCG GGGCCAGGCCGCACCCCCGCCCCGGTGCAGATGAACCTGTACGCCACCTGGGAGGTGGACCGGAGCTCGTCCAGCTGCGTGCCTAGTTAC TGCTACCAATGCCAAAGCCAGGTGCCGCCACGCAGCGGACACTGCTCTGCCTGCCGCGTCTGCATCCTGCGTCGGGACCACCACTGCCGC CTGCTGGGCCGCTGCGTGGGCTTCGGCAACTACCGGCCCTTCCTGTGCCTGCTGCTTCATGCCGCCGGCGTCCTGCTCCACGTCTCTGTG CTGCTGGGCCCTGCACTGTCGGCCCTGCTGCGAGCCCACACGCCCCTCCACATGGCTGCCCTCCTCCTGCTTCCCTGGCTCATGTTGCTC ACAGGCAGAGTGTCTCTGGCACAGTTTGCCTTGGCCTTCGTGACGGACACGTGCGTGGCGGGTGCGCTGCTGTGCGGGGCTGGGCTGCTC TTCCATGGGATGCTGCTGCTGCGGGGCCAGACCACATGGGAGTGGGCTCGGGGCCAGCACTCCTATGACCTGGGTCCCTGCCACAACCTG CAGGCAGCCCTGGGGCCCCGCTGGGCCCTCGTCTGGCTCTGGCCCTTCCTGGCCTCCCCATTGCCTGGGGATGGGATCACCTTCCAGACC |
| * Fusion transcript sequences (Full-length transcript). |
| >In-frame_PACS1_ENST00000320580_chr11_65838313_+_ZDHHC24_ENST00000310442_chr11_66311452_-_1814nt CCTCGGCCTCCGTAACCCCCGCCTAGCCGGGCCATGGCGGAACGCGGAGGGGCGGGCGGTGGTCCCGGAGGCGCCGGGGGCGGCAGCGGC CAGCGGGGATCCGGGGTCGCCCAGTCCCCTCAGCAGCCGCCGCCGCAGCAGCAGCAGCAGCAGCCGCCGCAGCAGCCGACGCCCCCCAAG CTGGCCCAGGCCACCTCGTCGTCCTCGTCCACCTCGGCGGCGGCTGCCTCCTCCTCGTCCTCGTCTACCTCCACCTCCATGGCCGTGGCG GTGGCCTCGGGCTCCGCGCCTCCCGGTGGCCCGGGGCCAGGCCGCACCCCCGCCCCGGTGCAGATGAACCTGTACGCCACCTGGGAGGTG GACCGGAGCTCGTCCAGCTGCGTGCCTAGTTACTGCTACCAATGCCAAAGCCAGGTGCCGCCACGCAGCGGACACTGCTCTGCCTGCCGC GTCTGCATCCTGCGTCGGGACCACCACTGCCGCCTGCTGGGCCGCTGCGTGGGCTTCGGCAACTACCGGCCCTTCCTGTGCCTGCTGCTT CATGCCGCCGGCGTCCTGCTCCACGTCTCTGTGCTGCTGGGCCCTGCACTGTCGGCCCTGCTGCGAGCCCACACGCCCCTCCACATGGCT GCCCTCCTCCTGCTTCCCTGGCTCATGTTGCTCACAGGCAGAGTGTCTCTGGCACAGTTTGCCTTGGCCTTCGTGACGGACACGTGCGTG GCGGGTGCGCTGCTGTGCGGGGCTGGGCTGCTCTTCCATGGGATGCTGCTGCTGCGGGGCCAGACCACATGGGAGTGGGCTCGGGGCCAG CACTCCTATGACCTGGGTCCCTGCCACAACCTGCAGGCAGCCCTGGGGCCCCGCTGGGCCCTCGTCTGGCTCTGGCCCTTCCTGGCCTCC CCATTGCCTGGGGATGGGATCACCTTCCAGACCACAGCAGATGTGGGACACACAGCCTCCTGACTCCAGGAAGAGCCAGAGCTGTGCAGG GAGGAAGGGGTGAGAGGGGGGCCCCCACACCTAGACTCAGTAAGGAAGTCGGGTTGGACCTTAACATCTGCATTGGACAACTCCACCCCT TCCTTGGCCTTGCCCCTGCCCGCCTACACTCCTACGTGTCCAGGGCTTGGGCCGTGACTTAGGCAGAGGAGTGCAGAGGAGGGTCTGGCA GGGGCTGCTCAGGCCGCCTAGCTGCCCCTTTGCCAGGTTAATAAAGCACTGACTTGTTTCTCAGCCTCCCTCCATCTTTGCATAGTTTCT GGCCCCTCACTTTGTTGCTGGGGCTGTTTCTGGGACCCTCTGTAGGGCCTGGAAACTGCAGGATGCCTGAGGGTCTCAGGGGCTGGGGCT CTACCTCCCCTGGCCTGGGTGAGTTGGGGGTGGGGCACCAGCACGCCAAGGCAGTGTCCTACTGATCCAGGCTATGAGAATCCAAACATT CTTTCCCAGGTTTGGCATTTTATAGTTAGAAGCATTTCTGCAACAGCAGTTTCATGGAACCTCTCTTAGCTAACCTGGTCCATGGGGCAG CAGTTACGCTCTAAGAATCCATGTGGTAAGATCATGGTGCGGCAAATGGAGGCAGGGTCCAACCCAGGTCTTTGTGCTTTTGCCTTTACC CTTGCACAGCTGGAGGAAATGAGTAGGAAAGAAATCAAGGTAAAGAAATGCGCTGGGGCTGTTTGGGCATCTGTGGAGGGTGGTGCTGAC AGGGCTAGGCCTGCACCTCTCTGGCCTCCTCAAGAGCTGCTTGTTAAATGTTTCCGTGTAAATAGAATGAATAGAGACCGCCATTTCCAC >In-frame_PACS1_ENST00000320580_chr11_65838313_+_ZDHHC24_ENST00000310442_chr11_66311452_-_1814nt CCTCGGCCTCCGTAACCCCCGCCTAGCCGGGCCATGGCGGAACGCGGAGGGGCGGGCGGTGGTCCCGGAGGCGCCGGGGGCGGCAGCGGC CAGCGGGGATCCGGGGTCGCCCAGTCCCCTCAGCAGCCGCCGCCGCAGCAGCAGCAGCAGCAGCCGCCGCAGCAGCCGACGCCCCCCAAG CTGGCCCAGGCCACCTCGTCGTCCTCGTCCACCTCGGCGGCGGCTGCCTCCTCCTCGTCCTCGTCTACCTCCACCTCCATGGCCGTGGCG GTGGCCTCGGGCTCCGCGCCTCCCGGTGGCCCGGGGCCAGGCCGCACCCCCGCCCCGGTGCAGATGAACCTGTACGCCACCTGGGAGGTG GACCGGAGCTCGTCCAGCTGCGTGCCTAGTTACTGCTACCAATGCCAAAGCCAGGTGCCGCCACGCAGCGGACACTGCTCTGCCTGCCGC GTCTGCATCCTGCGTCGGGACCACCACTGCCGCCTGCTGGGCCGCTGCGTGGGCTTCGGCAACTACCGGCCCTTCCTGTGCCTGCTGCTT CATGCCGCCGGCGTCCTGCTCCACGTCTCTGTGCTGCTGGGCCCTGCACTGTCGGCCCTGCTGCGAGCCCACACGCCCCTCCACATGGCT GCCCTCCTCCTGCTTCCCTGGCTCATGTTGCTCACAGGCAGAGTGTCTCTGGCACAGTTTGCCTTGGCCTTCGTGACGGACACGTGCGTG GCGGGTGCGCTGCTGTGCGGGGCTGGGCTGCTCTTCCATGGGATGCTGCTGCTGCGGGGCCAGACCACATGGGAGTGGGCTCGGGGCCAG CACTCCTATGACCTGGGTCCCTGCCACAACCTGCAGGCAGCCCTGGGGCCCCGCTGGGCCCTCGTCTGGCTCTGGCCCTTCCTGGCCTCC CCATTGCCTGGGGATGGGATCACCTTCCAGACCACAGCAGATGTGGGACACACAGCCTCCTGACTCCAGGAAGAGCCAGAGCTGTGCAGG GAGGAAGGGGTGAGAGGGGGGCCCCCACACCTAGACTCAGTAAGGAAGTCGGGTTGGACCTTAACATCTGCATTGGACAACTCCACCCCT TCCTTGGCCTTGCCCCTGCCCGCCTACACTCCTACGTGTCCAGGGCTTGGGCCGTGACTTAGGCAGAGGAGTGCAGAGGAGGGTCTGGCA GGGGCTGCTCAGGCCGCCTAGCTGCCCCTTTGCCAGGTTAATAAAGCACTGACTTGTTTCTCAGCCTCCCTCCATCTTTGCATAGTTTCT GGCCCCTCACTTTGTTGCTGGGGCTGTTTCTGGGACCCTCTGTAGGGCCTGGAAACTGCAGGATGCCTGAGGGTCTCAGGGGCTGGGGCT CTACCTCCCCTGGCCTGGGTGAGTTGGGGGTGGGGCACCAGCACGCCAAGGCAGTGTCCTACTGATCCAGGCTATGAGAATCCAAACATT CTTTCCCAGGTTTGGCATTTTATAGTTAGAAGCATTTCTGCAACAGCAGTTTCATGGAACCTCTCTTAGCTAACCTGGTCCATGGGGCAG CAGTTACGCTCTAAGAATCCATGTGGTAAGATCATGGTGCGGCAAATGGAGGCAGGGTCCAACCCAGGTCTTTGTGCTTTTGCCTTTACC CTTGCACAGCTGGAGGAAATGAGTAGGAAAGAAATCAAGGTAAAGAAATGCGCTGGGGCTGTTTGGGCATCTGTGGAGGGTGGTGCTGAC AGGGCTAGGCCTGCACCTCTCTGGCCTCCTCAAGAGCTGCTTGTTAAATGTTTCCGTGTAAATAGAATGAATAGAGACCGCCATTTCCAC |
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FusionGenePPI for PACS1_ZDHHC24 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| PACS1 | VAMP4, FURIN, FGFR1OP, GGA3, CSNK2A1, SORL1, WDR37, NTRK1, CTDSPL, IQCF1, SNX24, PTPRG, PPP1R7, C17orf70, PPP1CB, PPP1CA | ZDHHC24 | REL, TCF4, LMNA |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for PACS1_ZDHHC24 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for PACS1_ZDHHC24 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | PACS1 | C0028754 | Obesity | 1 | CTD_human |
| Hgene | PACS1 | C0236969 | Substance-Related Disorders | 1 | CTD_human |
| Hgene | PACS1 | C3554343 | MENTAL RETARDATION, AUTOSOMAL DOMINANT 17 | 1 | ORPHANET;UNIPROT |
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