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Fusion gene ID: 2571 |
FusionGeneSummary for ARHGEF38_ZNF622 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: ARHGEF38_ZNF622 | Fusion gene ID: 2571 | Hgene | Tgene | Gene symbol | ARHGEF38 | ZNF622 | Gene ID | 54848 | 90441 |
| Gene name | Rho guanine nucleotide exchange factor 38 | zinc finger protein 622 | |
| Synonyms | - | ZPR9 | |
| Cytomap | 4q24 | 5p15.1 | |
| Type of gene | protein-coding | protein-coding | |
| Description | rho guanine nucleotide exchange factor 38Rho guanine nucleotide exchange factor (GEF) 38 | zinc finger protein 622zinc finger-like protein 9 | |
| Modification date | 20180523 | 20180523 | |
| UniProtAcc | Q9NXL2 | Q969S3 | |
| Ensembl transtripts involved in fusion gene | ENST00000420470, ENST00000508036, ENST00000265154, | ENST00000308683, | |
| Fusion gene scores | * DoF score | 2 X 2 X 1=4 | 4 X 4 X 4=64 |
| # samples | 2 | 4 | |
| ** MAII score | log2(2/4*10)=2.32192809488736 | log2(4/64*10)=-0.678071905112638 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: ARHGEF38 [Title/Abstract] AND ZNF622 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Tgene | ZNF622 | GO:0008631 | intrinsic apoptotic signaling pathway in response to oxidative stress | 21771788 |
| Tgene | ZNF622 | GO:0033674 | positive regulation of kinase activity | 21771788 |
| Tgene | ZNF622 | GO:0043065 | positive regulation of apoptotic process | 21771788 |
| Tgene | ZNF622 | GO:0043410 | positive regulation of MAPK cascade | 21771788 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | PRAD | TCGA-YL-A9WL-01A | ARHGEF38 | chr4 | 106474118 | + | ZNF622 | chr5 | 16463851 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| In-frame | ENST00000420470 | ENST00000308683 | ARHGEF38 | chr4 | 106474118 | + | ZNF622 | chr5 | 16463851 | - |
| intron-3CDS | ENST00000508036 | ENST00000308683 | ARHGEF38 | chr4 | 106474118 | + | ZNF622 | chr5 | 16463851 | - |
| In-frame | ENST00000265154 | ENST00000308683 | ARHGEF38 | chr4 | 106474118 | + | ZNF622 | chr5 | 16463851 | - |
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FusionProtFeatures for ARHGEF38_ZNF622 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| ARHGEF38 | ZNF622 |
| May act as a guanine-nucleotide releasing factor.{ECO:0000250}. | May behave as an activator of the bound transcriptionfactor, MYBL2, and be involved in embryonic development. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Tgene | >ZNF622 | chr4:106474118 | chr5:16463851 | ENST00000308683 | - | 0 | 6 | 236_242 | 208 | 478 | Compositional bias | Note=Poly-Glu |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | >ARHGEF38 | chr4:106474118 | chr5:16463851 | ENST00000265154 | + | 1 | 4 | 689_694 | 65 | 220 | Compositional bias | Note=Poly-Ser |
| Hgene | >ARHGEF38 | chr4:106474118 | chr5:16463851 | ENST00000420470 | + | 1 | 14 | 689_694 | 65 | 778 | Compositional bias | Note=Poly-Ser |
| Hgene | >ARHGEF38 | chr4:106474118 | chr5:16463851 | ENST00000265154 | + | 1 | 4 | 327_536 | 65 | 220 | Domain | BAR |
| Hgene | >ARHGEF38 | chr4:106474118 | chr5:16463851 | ENST00000265154 | + | 1 | 4 | 582_645 | 65 | 220 | Domain | SH3 1 |
| Hgene | >ARHGEF38 | chr4:106474118 | chr5:16463851 | ENST00000265154 | + | 1 | 4 | 713_776 | 65 | 220 | Domain | SH3 2 |
| Hgene | >ARHGEF38 | chr4:106474118 | chr5:16463851 | ENST00000265154 | + | 1 | 4 | 94_285 | 65 | 220 | Domain | DH |
| Hgene | >ARHGEF38 | chr4:106474118 | chr5:16463851 | ENST00000420470 | + | 1 | 14 | 327_536 | 65 | 778 | Domain | BAR |
| Hgene | >ARHGEF38 | chr4:106474118 | chr5:16463851 | ENST00000420470 | + | 1 | 14 | 582_645 | 65 | 778 | Domain | SH3 1 |
| Hgene | >ARHGEF38 | chr4:106474118 | chr5:16463851 | ENST00000420470 | + | 1 | 14 | 713_776 | 65 | 778 | Domain | SH3 2 |
| Hgene | >ARHGEF38 | chr4:106474118 | chr5:16463851 | ENST00000420470 | + | 1 | 14 | 94_285 | 65 | 778 | Domain | DH |
| Tgene | ZNF622 | chr4:106474118 | chr5:16463851 | ENST00000308683 | - | 0 | 6 | 195_242 | 208 | 478 | Compositional bias | Note=Glu-rich |
| Tgene | ZNF622 | chr4:106474118 | chr5:16463851 | ENST00000308683 | - | 0 | 6 | 199_203 | 208 | 478 | Compositional bias | Note=Poly-Glu |
| Tgene | ZNF622 | chr4:106474118 | chr5:16463851 | ENST00000308683 | - | 0 | 6 | 4_28 | 208 | 478 | Zinc finger | Note=U1-type 1 |
| Tgene | ZNF622 | chr4:106474118 | chr5:16463851 | ENST00000308683 | - | 0 | 6 | 67_91 | 208 | 478 | Zinc finger | Note=U1-type 2 |
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FusionGeneSequence for ARHGEF38_ZNF622 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| >In-frame_ARHGEF38_ENST00000420470_chr4_106474118_+_ZNF622_ENST00000308683_chr5_16463851_-_335aa MEPKEATGKENMVTKKKNLAFLRSRLYMLERRKTDTVVESSVSGDHSGTLRRSQSDRTEYNQKLQDWEDIDSDEELECEDTEAMDDVVEQ DAEEEEAEEGPPLGAIPITDCLFCSHHSSSLMKNVAHMTKDHSFFIPDIEYLSDIKGLIKYLGEKVGVGKICLWCNEKGKSFYSTEAVQA HMNDKSHCKLFTDGDAALEFADFYDFRSSYPDHKEGEDPNKAEELPSEKNLEYDDETMELILPSGARVGHRSLMRYYKQRFGLSRAVAVA >In-frame_ARHGEF38_ENST00000265154_chr4_106474118_+_ZNF622_ENST00000308683_chr5_16463851_-_335aa MEPKEATGKENMVTKKKNLAFLRSRLYMLERRKTDTVVESSVSGDHSGTLRRSQSDRTEYNQKLQDWEDIDSDEELECEDTEAMDDVVEQ DAEEEEAEEGPPLGAIPITDCLFCSHHSSSLMKNVAHMTKDHSFFIPDIEYLSDIKGLIKYLGEKVGVGKICLWCNEKGKSFYSTEAVQA HMNDKSHCKLFTDGDAALEFADFYDFRSSYPDHKEGEDPNKAEELPSEKNLEYDDETMELILPSGARVGHRSLMRYYKQRFGLSRAVAVA |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| >In-frame_ARHGEF38_ENST00000420470_chr4_106474118_+_ZNF622_ENST00000308683_chr5_16463851_-_1005nt ATGGAGCCCAAAGAAGCCACTGGGAAAGAAAACATGGTCACCAAGAAAAAGAATCTGGCCTTCTTGAGGTCTAGACTCTATATGCTGGAG AGAAGGAAGACTGACACTGTGGTTGAGAGCAGTGTTTCTGGGGACCACTCTGGCACCTTGAGGAGGAGCCAATCTGACAGGACTGAATAC AACCAGAAATTACAAGATTGGGAAGATATTGATTCTGATGAAGAATTGGAATGTGAGGATACTGAAGCAATGGACGATGTGGTGGAGCAG GATGCAGAGGAGGAAGAGGCTGAGGAAGGCCCACCCCTTGGTGCCATCCCTATCACGGACTGCTTATTTTGTTCCCATCATTCCAGCTCG CTGATGAAGAATGTGGCTCACATGACCAAAGACCACAGTTTCTTTATTCCTGATATAGAATATCTTTCAGATATTAAGGGACTGATTAAA TACTTGGGAGAGAAAGTTGGTGTTGGCAAGATTTGCTTGTGGTGCAACGAGAAAGGGAAGTCCTTCTACTCCACAGAAGCTGTACAGGCA CATATGAATGACAAAAGCCACTGTAAGCTCTTCACAGATGGCGATGCTGCTTTGGAATTTGCAGACTTCTATGATTTTAGGAGTAGCTAT CCAGATCACAAGGAAGGGGAGGACCCCAATAAGGCTGAGGAGTTGCCCTCAGAAAAGAACTTGGAATATGATGATGAAACCATGGAATTG ATTCTGCCTTCTGGTGCCAGAGTGGGTCATCGCTCCTTGATGAGATACTACAAACAGCGATTTGGCTTGTCAAGAGCTGTGGCAGTTGCC AAAAATCGGAAGGCCGTGGGCCGAGTACTTCAGCAGTACAGAGCCCTGGGATGGACTGGCAGCACAGGAGCGGCTCTTATGCGAGAGCGA GACATGCAGTATGTCCAAAGGATGAAATCAAAATGGATGCTGAAGACAGGAATGAAGAACAATGCCACCAAGCAGATGCACTTTCGGGTC >In-frame_ARHGEF38_ENST00000265154_chr4_106474118_+_ZNF622_ENST00000308683_chr5_16463851_-_1005nt ATGGAGCCCAAAGAAGCCACTGGGAAAGAAAACATGGTCACCAAGAAAAAGAATCTGGCCTTCTTGAGGTCTAGACTCTATATGCTGGAG AGAAGGAAGACTGACACTGTGGTTGAGAGCAGTGTTTCTGGGGACCACTCTGGCACCTTGAGGAGGAGCCAATCTGACAGGACTGAATAC AACCAGAAATTACAAGATTGGGAAGATATTGATTCTGATGAAGAATTGGAATGTGAGGATACTGAAGCAATGGACGATGTGGTGGAGCAG GATGCAGAGGAGGAAGAGGCTGAGGAAGGCCCACCCCTTGGTGCCATCCCTATCACGGACTGCTTATTTTGTTCCCATCATTCCAGCTCG CTGATGAAGAATGTGGCTCACATGACCAAAGACCACAGTTTCTTTATTCCTGATATAGAATATCTTTCAGATATTAAGGGACTGATTAAA TACTTGGGAGAGAAAGTTGGTGTTGGCAAGATTTGCTTGTGGTGCAACGAGAAAGGGAAGTCCTTCTACTCCACAGAAGCTGTACAGGCA CATATGAATGACAAAAGCCACTGTAAGCTCTTCACAGATGGCGATGCTGCTTTGGAATTTGCAGACTTCTATGATTTTAGGAGTAGCTAT CCAGATCACAAGGAAGGGGAGGACCCCAATAAGGCTGAGGAGTTGCCCTCAGAAAAGAACTTGGAATATGATGATGAAACCATGGAATTG ATTCTGCCTTCTGGTGCCAGAGTGGGTCATCGCTCCTTGATGAGATACTACAAACAGCGATTTGGCTTGTCAAGAGCTGTGGCAGTTGCC AAAAATCGGAAGGCCGTGGGCCGAGTACTTCAGCAGTACAGAGCCCTGGGATGGACTGGCAGCACAGGAGCGGCTCTTATGCGAGAGCGA GACATGCAGTATGTCCAAAGGATGAAATCAAAATGGATGCTGAAGACAGGAATGAAGAACAATGCCACCAAGCAGATGCACTTTCGGGTC |
| * Fusion transcript sequences (Full-length transcript). |
| >In-frame_ARHGEF38_ENST00000420470_chr4_106474118_+_ZNF622_ENST00000308683_chr5_16463851_-_1287nt TCACAGCCAGGTAACCCTGGAGTGAAGCGGTTTAGTTAGAAGGGAGCAGATAAACTCGTCACTCTAGTAGCTTTAACCCTCACCCTGAGG CACCTTAGCAATCAGCCATTGCCTGCAAGCCTCCAAAGCTTGTCTTTGCCTAATATGGAGCCCAAAGAAGCCACTGGGAAAGAAAACATG GTCACCAAGAAAAAGAATCTGGCCTTCTTGAGGTCTAGACTCTATATGCTGGAGAGAAGGAAGACTGACACTGTGGTTGAGAGCAGTGTT TCTGGGGACCACTCTGGCACCTTGAGGAGGAGCCAATCTGACAGGACTGAATACAACCAGAAATTACAAGATTGGGAAGATATTGATTCT GATGAAGAATTGGAATGTGAGGATACTGAAGCAATGGACGATGTGGTGGAGCAGGATGCAGAGGAGGAAGAGGCTGAGGAAGGCCCACCC CTTGGTGCCATCCCTATCACGGACTGCTTATTTTGTTCCCATCATTCCAGCTCGCTGATGAAGAATGTGGCTCACATGACCAAAGACCAC AGTTTCTTTATTCCTGATATAGAATATCTTTCAGATATTAAGGGACTGATTAAATACTTGGGAGAGAAAGTTGGTGTTGGCAAGATTTGC TTGTGGTGCAACGAGAAAGGGAAGTCCTTCTACTCCACAGAAGCTGTACAGGCACATATGAATGACAAAAGCCACTGTAAGCTCTTCACA GATGGCGATGCTGCTTTGGAATTTGCAGACTTCTATGATTTTAGGAGTAGCTATCCAGATCACAAGGAAGGGGAGGACCCCAATAAGGCT GAGGAGTTGCCCTCAGAAAAGAACTTGGAATATGATGATGAAACCATGGAATTGATTCTGCCTTCTGGTGCCAGAGTGGGTCATCGCTCC TTGATGAGATACTACAAACAGCGATTTGGCTTGTCAAGAGCTGTGGCAGTTGCCAAAAATCGGAAGGCCGTGGGCCGAGTACTTCAGCAG TACAGAGCCCTGGGATGGACTGGCAGCACAGGAGCGGCTCTTATGCGAGAGCGAGACATGCAGTATGTCCAAAGGATGAAATCAAAATGG ATGCTGAAGACAGGAATGAAGAACAATGCCACCAAGCAGATGCACTTTCGGGTCCAAGTGAGATTCTGAGAGTCTGCTGGGATTGAGCAA TCATCTCCTGCCCAAGTTTCCTCCTTGCCCTGAGGACCAGTGAAAGACAGATCATAGGAGAGACCCTTTTGCTGCTACTTCATTCGTTCT >In-frame_ARHGEF38_ENST00000265154_chr4_106474118_+_ZNF622_ENST00000308683_chr5_16463851_-_1289nt AGTCACAGCCAGGTAACCCTGGAGTGAAGCGGTTTAGTTAGAAGGGAGCAGATAAACTCGTCACTCTAGTAGCTTTAACCCTCACCCTGA GGCACCTTAGCAATCAGCCATTGCCTGCAAGCCTCCAAAGCTTGTCTTTGCCTAATATGGAGCCCAAAGAAGCCACTGGGAAAGAAAACA TGGTCACCAAGAAAAAGAATCTGGCCTTCTTGAGGTCTAGACTCTATATGCTGGAGAGAAGGAAGACTGACACTGTGGTTGAGAGCAGTG TTTCTGGGGACCACTCTGGCACCTTGAGGAGGAGCCAATCTGACAGGACTGAATACAACCAGAAATTACAAGATTGGGAAGATATTGATT CTGATGAAGAATTGGAATGTGAGGATACTGAAGCAATGGACGATGTGGTGGAGCAGGATGCAGAGGAGGAAGAGGCTGAGGAAGGCCCAC CCCTTGGTGCCATCCCTATCACGGACTGCTTATTTTGTTCCCATCATTCCAGCTCGCTGATGAAGAATGTGGCTCACATGACCAAAGACC ACAGTTTCTTTATTCCTGATATAGAATATCTTTCAGATATTAAGGGACTGATTAAATACTTGGGAGAGAAAGTTGGTGTTGGCAAGATTT GCTTGTGGTGCAACGAGAAAGGGAAGTCCTTCTACTCCACAGAAGCTGTACAGGCACATATGAATGACAAAAGCCACTGTAAGCTCTTCA CAGATGGCGATGCTGCTTTGGAATTTGCAGACTTCTATGATTTTAGGAGTAGCTATCCAGATCACAAGGAAGGGGAGGACCCCAATAAGG CTGAGGAGTTGCCCTCAGAAAAGAACTTGGAATATGATGATGAAACCATGGAATTGATTCTGCCTTCTGGTGCCAGAGTGGGTCATCGCT CCTTGATGAGATACTACAAACAGCGATTTGGCTTGTCAAGAGCTGTGGCAGTTGCCAAAAATCGGAAGGCCGTGGGCCGAGTACTTCAGC AGTACAGAGCCCTGGGATGGACTGGCAGCACAGGAGCGGCTCTTATGCGAGAGCGAGACATGCAGTATGTCCAAAGGATGAAATCAAAAT GGATGCTGAAGACAGGAATGAAGAACAATGCCACCAAGCAGATGCACTTTCGGGTCCAAGTGAGATTCTGAGAGTCTGCTGGGATTGAGC AATCATCTCCTGCCCAAGTTTCCTCCTTGCCCTGAGGACCAGTGAAAGACAGATCATAGGAGAGACCCTTTTGCTGCTACTTCATTCGTT |
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FusionGenePPI for ARHGEF38_ZNF622 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| ARHGEF38 | CLASP1, TMEM261 | ZNF622 | MYBL2, MELK, ZNF622, OAS3, APP, WDR33, EFTUD2, RBM28, PAXIP1, GLA, UBFD1, G6PD, NPEPPS, PPP1R2, SCLY, EIF6, FTSJ3, POP1, STAU1, DNAJC21, UFL1, LSG1, C1orf35, NMD3, NOC3L, NEMF, HECTD1, BRIX1, KRR1, EBNA1BP2, MRTO4, EIF2B4, CEP128, CNTRL, DCTN1, LCA5, ERBB2, HNRNPU, NPM1, RPL10, CCDC102B, YAF2, PTRF, PRPF31 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for ARHGEF38_ZNF622 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for ARHGEF38_ZNF622 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
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