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Fusion gene ID: 25524 |
FusionGeneSummary for OSBPL10_UBP1 |
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Fusion gene information | Fusion gene name: OSBPL10_UBP1 | Fusion gene ID: 25524 | Hgene | Tgene | Gene symbol | OSBPL10 | UBP1 | Gene ID | 114884 | 7342 |
Gene name | oxysterol binding protein like 10 | upstream binding protein 1 | |
Synonyms | ORP10|OSBP9 | LBP-1B|LBP-1a|LBP1A|LBP1B | |
Cytomap | 3p23 | 3p22.3 | |
Type of gene | protein-coding | protein-coding | |
Description | oxysterol-binding protein-related protein 10ORP-10OSBP-related protein 10 | upstream-binding protein 1transcription factor LBP-1 | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | Q9BXB5 | Q9NZI7 | |
Ensembl transtripts involved in fusion gene | ENST00000396556, ENST00000438237, ENST00000467647, | ENST00000283629, ENST00000447368, ENST00000283628, ENST00000486388, | |
Fusion gene scores | * DoF score | 7 X 5 X 4=140 | 2 X 2 X 2=8 |
# samples | 7 | 2 | |
** MAII score | log2(7/140*10)=-1 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(2/8*10)=1.32192809488736 | |
Context | PubMed: OSBPL10 [Title/Abstract] AND UBP1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | LUSC | TCGA-79-5596-01A | OSBPL10 | chr3 | 32022391 | - | UBP1 | chr3 | 33467233 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000396556 | ENST00000283629 | OSBPL10 | chr3 | 32022391 | - | UBP1 | chr3 | 33467233 | - |
Frame-shift | ENST00000396556 | ENST00000447368 | OSBPL10 | chr3 | 32022391 | - | UBP1 | chr3 | 33467233 | - |
Frame-shift | ENST00000396556 | ENST00000283628 | OSBPL10 | chr3 | 32022391 | - | UBP1 | chr3 | 33467233 | - |
5CDS-intron | ENST00000396556 | ENST00000486388 | OSBPL10 | chr3 | 32022391 | - | UBP1 | chr3 | 33467233 | - |
Frame-shift | ENST00000438237 | ENST00000283629 | OSBPL10 | chr3 | 32022391 | - | UBP1 | chr3 | 33467233 | - |
Frame-shift | ENST00000438237 | ENST00000447368 | OSBPL10 | chr3 | 32022391 | - | UBP1 | chr3 | 33467233 | - |
Frame-shift | ENST00000438237 | ENST00000283628 | OSBPL10 | chr3 | 32022391 | - | UBP1 | chr3 | 33467233 | - |
5CDS-intron | ENST00000438237 | ENST00000486388 | OSBPL10 | chr3 | 32022391 | - | UBP1 | chr3 | 33467233 | - |
intron-3CDS | ENST00000467647 | ENST00000283629 | OSBPL10 | chr3 | 32022391 | - | UBP1 | chr3 | 33467233 | - |
intron-3CDS | ENST00000467647 | ENST00000447368 | OSBPL10 | chr3 | 32022391 | - | UBP1 | chr3 | 33467233 | - |
intron-3CDS | ENST00000467647 | ENST00000283628 | OSBPL10 | chr3 | 32022391 | - | UBP1 | chr3 | 33467233 | - |
intron-intron | ENST00000467647 | ENST00000486388 | OSBPL10 | chr3 | 32022391 | - | UBP1 | chr3 | 33467233 | - |
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FusionProtFeatures for OSBPL10_UBP1 |
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Hgene | Tgene |
OSBPL10 | UBP1 |
Probable lipid transporter involved in lipidcountertransport between the endoplasmic reticulum and the plasmamembrane. Its ability to bind phosphatidylserine, suggests that itspecifically exchanges phosphatidylserine withphosphatidylinositol 4-phosphate (PI4P), deliveringphosphatidylserine to the plasma membrane in exchange for PI4P(PubMed:23934110) (Probable). Plays a role in negative regulationof lipid biosynthesis (PubMed:19554302). Negatively regulates APOBsecretion from hepatocytes (PubMed:19554302, PubMed:22906437).Binds cholesterol and acidic phospholipids (PubMed:22906437). Alsobinds 25-hydroxycholesterol (PubMed:17428193). Bindsphosphatidylserine (PubMed:23934110).{ECO:0000269|PubMed:17428193, ECO:0000269|PubMed:19554302,ECO:0000269|PubMed:22906437, ECO:0000269|PubMed:23934110,ECO:0000305}. | Functions as a transcriptional activator in a promotercontext-dependent manner. Modulates the placental expression ofCYP11A1. Involved in regulation of the alpha-globin gene inerythroid cells. Activation of the alpha-globin promoter inerythroid cells is via synergistic interaction with TFCP2 (Bysimilarity). Involved in regulation of the alpha-globin gene inerythroid cells. Binds strongly to sequences around the HIV-1initiation site and weakly over the TATA-box. Represses HIV-1transcription by inhibiting the binding of TFIID to the TATA-box.{ECO:0000250, ECO:0000269|PubMed:10644752,ECO:0000269|PubMed:2006421, ECO:0000269|PubMed:8114710}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for OSBPL10_UBP1 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for OSBPL10_UBP1 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
OSBPL10 | AP2B1, ALDOA, BBS1, GBAS, MMP2, CUL1, CLINT1, KEAP1, SAP18, SRRM2, WRNIP1, CLPB, USP11, OSBPL9, ZC3H18, PGAM5, IKBKG, VAPB, VAPA | UBP1 | TFCP2, WWP2, ELAVL1, TFAP4, WDR4, USP5, TRIM28, GLYCTK, ZNF184, JAK2, ANKRD29, PRMT6, XPO1, FOXA1, FOXC1, FOXC2, FOXD3, FOXE1, FOXN1, FOXP1, FOXP3, STK35, EVL, FAM19A3, GK, MTHFD2 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for OSBPL10_UBP1 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for OSBPL10_UBP1 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |