|
||||||
|
 | |
| |
| |
| |
| |
|
Fusion gene ID: 25388 |
FusionGeneSummary for OGFOD3_WDR45B |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: OGFOD3_WDR45B | Fusion gene ID: 25388 | Hgene | Tgene | Gene symbol | OGFOD3 | WDR45B | Gene ID | 79701 | 56270 |
| Gene name | 2-oxoglutarate and iron dependent oxygenase domain containing 3 | WD repeat domain 45B | |
| Synonyms | C17orf101 | NEDSBAS|WDR45L|WIPI-3|WIPI3 | |
| Cytomap | 17q25.3 | 17q25.3 | |
| Type of gene | protein-coding | protein-coding | |
| Description | 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 3PKHD domain-containing transmembrane protein C17orf101 | WD repeat domain phosphoinositide-interacting protein 3WD repeat protein 45-likeWD repeat-containing protein 45-likeWD repeat-containing protein 45BWDR45-like proteinWIPI3 longWIPI49-like protein | |
| Modification date | 20180519 | 20180525 | |
| UniProtAcc | Q6PK18 | Q5MNZ6 | |
| Ensembl transtripts involved in fusion gene | ENST00000313056, ENST00000329197, ENST00000578287, | ENST00000392325, ENST00000571835, | |
| Fusion gene scores | * DoF score | 3 X 2 X 3=18 | 1 X 1 X 1=1 |
| # samples | 3 | 1 | |
| ** MAII score | log2(3/18*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(1/1*10)=3.32192809488736 | |
| Context | PubMed: OGFOD3 [Title/Abstract] AND WDR45B [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | LD | LGG | TCGA-HW-8321-01A | OGFOD3 | chr17 | 80369331 | - | WDR45B | chr17 | 80585167 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| Frame-shift | ENST00000313056 | ENST00000392325 | OGFOD3 | chr17 | 80369331 | - | WDR45B | chr17 | 80585167 | - |
| 5CDS-5UTR | ENST00000313056 | ENST00000571835 | OGFOD3 | chr17 | 80369331 | - | WDR45B | chr17 | 80585167 | - |
| In-frame | ENST00000329197 | ENST00000392325 | OGFOD3 | chr17 | 80369331 | - | WDR45B | chr17 | 80585167 | - |
| 5CDS-5UTR | ENST00000329197 | ENST00000571835 | OGFOD3 | chr17 | 80369331 | - | WDR45B | chr17 | 80585167 | - |
| intron-3CDS | ENST00000578287 | ENST00000392325 | OGFOD3 | chr17 | 80369331 | - | WDR45B | chr17 | 80585167 | - |
| intron-5UTR | ENST00000578287 | ENST00000571835 | OGFOD3 | chr17 | 80369331 | - | WDR45B | chr17 | 80585167 | - |
Top |
FusionProtFeatures for OGFOD3_WDR45B |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| OGFOD3 | WDR45B |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Top |
FusionGeneSequence for OGFOD3_WDR45B |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| >In-frame_OGFOD3_ENST00000329197_chr17_80369331_-_WDR45B_ENST00000392325_chr17_80585167_-_390aa MAPQRRAATKAPEGNGAAERRNRSSTKKDRAPREVQRLWQRPWLRTAGLGAGFVLTALLLWSSLGADDGVAEVLARRGEVVAGRFIEVPC SEDYDSHRRFEGCTPRKCGRGVTDVVITREEAERIRSNDLGXPEEEDCYXNRIFYRSQGSQAAARXNCGGFGLHDXGVHIHTQSPSVARL RNLLXPQRPLCPLSQXXQLPPGLSGHAHGPCAACGPGQHGEATRGHSCTRGCPELHCTQPAGNKNCNCIRERDAYKNIXYFIRAFNPGTA KRISSSQYLLHQLQSGCVPHLRIQRPRHSAYFCSXRSKKEXTVQFGLSQFPSKILQFQVEFLQVSGSLRLSVHLCLWNRAKRRHCNLCRR |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| >In-frame_OGFOD3_ENST00000329197_chr17_80369331_-_WDR45B_ENST00000392325_chr17_80585167_-_1171nt ATGGCTCCTCAGCGGAGGGCCGCAACCAAGGCGCCCGAGGGCAACGGAGCGGCCGAGCGCCGGAACCGGAGCAGCACCAAGAAGGACCGA GCCCCGCGGGAGGTGCAGAGGCTGTGGCAGAGGCCGTGGCTAAGGACCGCGGGCCTGGGGGCTGGCTTTGTGCTCACCGCACTCCTGCTC TGGAGCAGCTTGGGGGCCGACGACGGGGTCGCAGAGGTCCTGGCCCGCCGTGGCGAGGTCGTGGCAGGGAGATTCATCGAGGTGCCCTGC TCTGAGGACTACGACAGTCACCGCAGGTTCGAAGGCTGCACTCCCCGAAAGTGCGGCAGAGGTGTCACCGATGTCGTCATCACCAGGGAG GAAGCGGAGCGGATTCGCAGTAATGATCTGGGATGACCTGAAGAAGAAGACTGTTATTGAAATAGAATTTTCTACAGAAGTCAAGGCAGT CAAGCTGCGGCGAGATAGAATTGTGGTGGTTTTGGACTCCATGATTAAGGTGTTCACATTCACACACAATCCCCATCAGTTGCACGTCTT CGAAACCTGCTATAACCCCAAAGGCCTCTGTGTCCTTTGTCCCAATAGTAACAACTCCCTCCTGGCCTTTCCGGGCACGCACACGGGCCA TGTGCAGCTTGTGGACCTGGCCAGCACGGAGAAGCCACCCGTGGACATTCCTGCACACGAGGGTGTCCTGAGCTGCATTGCACTCAACCT GCAGGGAACAAGAATTGCAACTGCATCCGAGAAAGGGACGCTTATAAGAATATTTGATACTTCATCAGGGCATTTAATCCAGGAACTGCG AAGAGGATCTCAAGCAGCCAATATTTACTGCATCAACTTCAATCAGGATGCGTCCCTCATCTGCGTATCCAGCGACCACGGCACAGTGCA TATTTTTGCAGCTGAAGATCCAAAAAGGAATAAACAGTCCAGTTTGGCCTCAGCCAGTTTCCTTCCAAAATACTTCAGTTCCAAGTGGAG TTTCTCCAAGTTTCAGGTTCCCTCAGGCTCTCCGTGCATTTGTGCCTTTGGAACAGAGCCAAACGCCGTCATTGCAATTTGTGCAGACGG CAGCTACTACAAATTCCTGTTCAACCCCAAGGGGGAGTGCATCCGAGATGTCTACGCGCAGTTTCTAGAGATGACCGATGACAAGCTGTG |
| * Fusion transcript sequences (Full-length transcript). |
| >In-frame_OGFOD3_ENST00000329197_chr17_80369331_-_WDR45B_ENST00000392325_chr17_80585167_-_2619nt CTGCGCCGTGCCTGCCTCGCGCTCCCTGTTACGGCGTTCGTCCCCGGGCCTGGCGCCCGCGTCCGGCCCGGCTCCGCGGCGGCCTGGTCC GATGGCTCCTCAGCGGAGGGCCGCAACCAAGGCGCCCGAGGGCAACGGAGCGGCCGAGCGCCGGAACCGGAGCAGCACCAAGAAGGACCG AGCCCCGCGGGAGGTGCAGAGGCTGTGGCAGAGGCCGTGGCTAAGGACCGCGGGCCTGGGGGCTGGCTTTGTGCTCACCGCACTCCTGCT CTGGAGCAGCTTGGGGGCCGACGACGGGGTCGCAGAGGTCCTGGCCCGCCGTGGCGAGGTCGTGGCAGGGAGATTCATCGAGGTGCCCTG CTCTGAGGACTACGACAGTCACCGCAGGTTCGAAGGCTGCACTCCCCGAAAGTGCGGCAGAGGTGTCACCGATGTCGTCATCACCAGGGA GGAAGCGGAGCGGATTCGCAGTAATGATCTGGGATGACCTGAAGAAGAAGACTGTTATTGAAATAGAATTTTCTACAGAAGTCAAGGCAG TCAAGCTGCGGCGAGATAGAATTGTGGTGGTTTTGGACTCCATGATTAAGGTGTTCACATTCACACACAATCCCCATCAGTTGCACGTCT TCGAAACCTGCTATAACCCCAAAGGCCTCTGTGTCCTTTGTCCCAATAGTAACAACTCCCTCCTGGCCTTTCCGGGCACGCACACGGGCC ATGTGCAGCTTGTGGACCTGGCCAGCACGGAGAAGCCACCCGTGGACATTCCTGCACACGAGGGTGTCCTGAGCTGCATTGCACTCAACC TGCAGGGAACAAGAATTGCAACTGCATCCGAGAAAGGGACGCTTATAAGAATATTTGATACTTCATCAGGGCATTTAATCCAGGAACTGC GAAGAGGATCTCAAGCAGCCAATATTTACTGCATCAACTTCAATCAGGATGCGTCCCTCATCTGCGTATCCAGCGACCACGGCACAGTGC ATATTTTTGCAGCTGAAGATCCAAAAAGGAATAAACAGTCCAGTTTGGCCTCAGCCAGTTTCCTTCCAAAATACTTCAGTTCCAAGTGGA GTTTCTCCAAGTTTCAGGTTCCCTCAGGCTCTCCGTGCATTTGTGCCTTTGGAACAGAGCCAAACGCCGTCATTGCAATTTGTGCAGACG GCAGCTACTACAAATTCCTGTTCAACCCCAAGGGGGAGTGCATCCGAGATGTCTACGCGCAGTTTCTAGAGATGACCGATGACAAGCTGT GACTCCAGCTGGGGGCGCCACAGCACCCACCACCTGCCGCCTTCAGACTCTCGGGGCTGGTGCCAGTGCCCCAGGGGCCTCCTGGGCCAC GGGCTGGAGGGGCTGCCCAGGGACCTTGGTCTCGAAGCCATACGTGGTTGTCTGCTTTCCTAAGGACTCCCATTTCCAGTATTAAAGAGA GAATCATCATCAAGGCACCGTAGGTAACTCAGTGGCTGTGACCAGCTCGACTGGCGGCCACTGGCTGTTCCCATGAGTTCAGCTGTGACG TTAGCTTCAGTGGCTCCGCCGCATCCTCACACTGACGGGGGCTCCATACGGACCTGGGGACTGGGCTGAGAGGGTGGACGAGTTCAGGTT TGTTTTTGCAGCAGATTCCGTCGTTCTTACTGAGTCTGCAGCGGGGGAGTGAACAAGTGTGCAGATGTAAGTTCTTACATGATAAGCAGA TTGAATACAACACCAGCAGCTTGCCTTAGAAAAGGAGAAAGGAATTCCTTTTCCCGCCCGAACATGAAGAAAAATGACCTGACCCTGTAG AGAGAACACAGTGTGAATGTTTCCCCTCGTGTGAGCCCAGCCTGTGGTCTTCTCCGTACCCGCAACGTGGTCATCTGTGCCCGTGACGTC ACCTGTGCCCGTGCGTGGCGTCCCCGTCTCCGTTGGGGCCATTAGAATGAGGCAGACACCAGGCCACTCTAGAAGCCGAGCCGTCACACC TCAGGCGTGTGCGGGGCGGGGACGGGGGGTCTCCTGGTTACATTTTGGATTAAACCTGTTTCCCGGTTATGTGTAGGGAACAGCAGAGTG ATGCACGAACTTTGAACATTCGTTATGGGGAAAACATCCTTTAACTTCGGGGTCGTCTGCCAGAGCAGGGTCTGGGAGGGTCCATGCAGT TCCCGCTGGTGTGGAGGGAAATGCCCTGGTCTGGCCTCCGAGCCCCCAGGTCCACCGTCTCCCCTCCCCTCATTTGTAAGAATAGCTACA CACTAACATTTTGGGAAGGAGAGGCACATAACTTTTTTTAACATTTGGTAACTAGGTTATGGGCTCTACATTGTCAGCTACTTGGGATAT ATATTTAATTTTCTTAAATTCCCGTTAAACTCTATTTTATGGTTTTGATTTCAGATTGCAAACATGTAAAACCTGCATAGCAGCGAGTTC TCGGTTTTGCCGGTTTCTTTAGTTCTTTACTGTCACTGTCATGTAATCAGCTAATTCTCTGTGGATGTTGCTGTAAAGTATGCATGTTCC TTTCATGTGTATTTAATCATGATGTTTAATTTTGCACACTTATTTGTAATGTTTCTTTTAAATAAAAGTGACTAATTTTGTTGTAGTCTG |
Top |
FusionGenePPI for OGFOD3_WDR45B |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| OGFOD3 | ATP2C1, CLGN, CANX, C1GALT1C1, DNAJB9, NHLRC3, GPC6, LMF1, EIF2AK3, TRIP6, MPC2 | WDR45B | ELAVL1, APP, UPP1, TYMS, TXNDC17, UROD, RAB3A, AK4, GAS2L1, PMF1, SPA17, RCN1, ARRDC1, UBXN10, DUSP13, MTMR9, KHDRBS2, KCNJ5, ASPRV1, CACNB3, TFAP4, BMX, PML, PLEKHO1, C5orf24, CNPY2, PLEKHA1, P2RX5, SARNP |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
RelatedDrugs for OGFOD3_WDR45B |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
RelatedDiseases for OGFOD3_WDR45B |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Tgene | WDR45B | C3714756 | Intellectual Disability | 1 | CTD_human |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
|