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Fusion gene ID: 25198 |
FusionGeneSummary for NUP160_RBM6 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: NUP160_RBM6 | Fusion gene ID: 25198 | Hgene | Tgene | Gene symbol | NUP160 | RBM6 | Gene ID | 23279 | 10180 |
| Gene name | nucleoporin 160 | RNA binding motif protein 6 | |
| Synonyms | - | 3G2|DEF-3|DEF3|HLC-11|NY-LU-12|g16 | |
| Cytomap | 11p11.2 | 3p21.31 | |
| Type of gene | protein-coding | protein-coding | |
| Description | nuclear pore complex protein Nup160160 kDa nucleoporinnucleoporin 160kDnucleoporin 160kDanucleoporin Nup160 | RNA-binding protein 6RNA-binding protein DEF-3lung cancer antigen NY-LU-12lung cancer protooncogene 11 | |
| Modification date | 20180523 | 20180519 | |
| UniProtAcc | Q12769 | P78332 | |
| Ensembl transtripts involved in fusion gene | ENST00000378460, ENST00000530326, ENST00000528071, ENST00000528501, ENST00000531016, ENST00000532747, ENST00000526870, | ENST00000442092, ENST00000266022, ENST00000443081, ENST00000539992, ENST00000441115, ENST00000422955, ENST00000421682, | |
| Fusion gene scores | * DoF score | 5 X 3 X 4=60 | 10 X 8 X 8=640 |
| # samples | 5 | 11 | |
| ** MAII score | log2(5/60*10)=-0.263034405833794 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(11/640*10)=-2.5405683813627 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: NUP160 [Title/Abstract] AND RBM6 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | NUP160 | GO:0006406 | mRNA export from nucleus | 11684705 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | UCS | TCGA-N5-A4RA-01A | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| Frame-shift | ENST00000378460 | ENST00000442092 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| Frame-shift | ENST00000378460 | ENST00000266022 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| In-frame | ENST00000378460 | ENST00000443081 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| In-frame | ENST00000378460 | ENST00000539992 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| 5CDS-intron | ENST00000378460 | ENST00000441115 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| 5CDS-intron | ENST00000378460 | ENST00000422955 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| 5CDS-intron | ENST00000378460 | ENST00000421682 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| 5UTR-3CDS | ENST00000530326 | ENST00000442092 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| 5UTR-3CDS | ENST00000530326 | ENST00000266022 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| 5UTR-3CDS | ENST00000530326 | ENST00000443081 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| 5UTR-3CDS | ENST00000530326 | ENST00000539992 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| 5UTR-intron | ENST00000530326 | ENST00000441115 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| 5UTR-intron | ENST00000530326 | ENST00000422955 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| 5UTR-intron | ENST00000530326 | ENST00000421682 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| intron-3CDS | ENST00000528071 | ENST00000442092 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| intron-3CDS | ENST00000528071 | ENST00000266022 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| intron-3CDS | ENST00000528071 | ENST00000443081 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| intron-3CDS | ENST00000528071 | ENST00000539992 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| intron-intron | ENST00000528071 | ENST00000441115 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| intron-intron | ENST00000528071 | ENST00000422955 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| intron-intron | ENST00000528071 | ENST00000421682 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| intron-3CDS | ENST00000528501 | ENST00000442092 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| intron-3CDS | ENST00000528501 | ENST00000266022 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| intron-3CDS | ENST00000528501 | ENST00000443081 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| intron-3CDS | ENST00000528501 | ENST00000539992 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| intron-intron | ENST00000528501 | ENST00000441115 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| intron-intron | ENST00000528501 | ENST00000422955 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| intron-intron | ENST00000528501 | ENST00000421682 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| intron-3CDS | ENST00000531016 | ENST00000442092 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| intron-3CDS | ENST00000531016 | ENST00000266022 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| intron-3CDS | ENST00000531016 | ENST00000443081 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| intron-3CDS | ENST00000531016 | ENST00000539992 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| intron-intron | ENST00000531016 | ENST00000441115 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| intron-intron | ENST00000531016 | ENST00000422955 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| intron-intron | ENST00000531016 | ENST00000421682 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| Frame-shift | ENST00000532747 | ENST00000442092 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| In-frame | ENST00000532747 | ENST00000266022 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| Frame-shift | ENST00000532747 | ENST00000443081 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| Frame-shift | ENST00000532747 | ENST00000539992 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| 5CDS-intron | ENST00000532747 | ENST00000441115 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| 5CDS-intron | ENST00000532747 | ENST00000422955 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| 5CDS-intron | ENST00000532747 | ENST00000421682 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| Frame-shift | ENST00000526870 | ENST00000442092 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| Frame-shift | ENST00000526870 | ENST00000266022 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| In-frame | ENST00000526870 | ENST00000443081 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| In-frame | ENST00000526870 | ENST00000539992 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| 5CDS-intron | ENST00000526870 | ENST00000441115 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| 5CDS-intron | ENST00000526870 | ENST00000422955 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
| 5CDS-intron | ENST00000526870 | ENST00000421682 | NUP160 | chr11 | 47869400 | - | RBM6 | chr3 | 50114441 | + |
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FusionProtFeatures for NUP160_RBM6 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| NUP160 | RBM6 |
| Involved in poly(A)+ RNA transport.{ECO:0000269|PubMed:11684705}. | Specifically binds poly(G) RNA homopolymers in vitro. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for NUP160_RBM6 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| >In-frame_NUP160_ENST00000378460_chr11_47869400_-_RBM6_ENST00000443081_chr3_50114441_+_146aa MLHLSAAPPAPPPEVTATARPCLCSVGRRGDGGKMAAAGALERSFVELSGAERERPRHFREFTVCSIGTANAVAGAVKYSESAGGFYYVE >In-frame_NUP160_ENST00000378460_chr11_47869400_-_RBM6_ENST00000539992_chr3_50114441_+_146aa MLHLSAAPPAPPPEVTATARPCLCSVGRRGDGGKMAAAGALERSFVELSGAERERPRHFREFTVCSIGTANAVAGAVKYSESAGGFYYVE >In-frame_NUP160_ENST00000532747_chr11_47869400_-_RBM6_ENST00000266022_chr3_50114441_+_112aa MAAAGALERSFVELSGAERERPRHFREFTVCSIGTANAVAGAVKYSESAGGFYYVESGKLFSVTRNRFIHWLKAGXGAPVLEPQEEPAKD >In-frame_NUP160_ENST00000526870_chr11_47869400_-_RBM6_ENST00000443081_chr3_50114441_+_146aa MLHLSAAPPAPPPEVTATARPCLCSVGRRGDGGKMAAAGALERSFVELSGAERERPRHFREFTVCSIGTANAVAGAVKYSESAGGFYYVE >In-frame_NUP160_ENST00000526870_chr11_47869400_-_RBM6_ENST00000539992_chr3_50114441_+_146aa MLHLSAAPPAPPPEVTATARPCLCSVGRRGDGGKMAAAGALERSFVELSGAERERPRHFREFTVCSIGTANAVAGAVKYSESAGGFYYVE |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| >In-frame_NUP160_ENST00000378460_chr11_47869400_-_RBM6_ENST00000443081_chr3_50114441_+_440nt ATGCTTCACCTGTCCGCAGCTCCGCCCGCCCCACCCCCGGAAGTGACGGCGACCGCGCGGCCCTGCCTTTGTTCCGTTGGGCGTCGCGGC GACGGCGGGAAGATGGCGGCGGCGGGAGCCCTGGAACGGAGCTTCGTGGAGCTAAGCGGAGCTGAGCGCGAAAGGCCGAGGCACTTTCGG GAATTCACAGTCTGCAGCATTGGGACTGCAAATGCCGTGGCTGGCGCCGTAAAATACAGTGAAAGCGCGGGAGGCTTTTACTACGTGGAG AGTGGCAAGTTGTTCTCCGTAACCAGAAACAGGTTCATTCATTGGCTGAAGGCCGGATGAGGGGCCCCAGTGTTGGAGCCTCAGGAAGAA >In-frame_NUP160_ENST00000378460_chr11_47869400_-_RBM6_ENST00000539992_chr3_50114441_+_440nt ATGCTTCACCTGTCCGCAGCTCCGCCCGCCCCACCCCCGGAAGTGACGGCGACCGCGCGGCCCTGCCTTTGTTCCGTTGGGCGTCGCGGC GACGGCGGGAAGATGGCGGCGGCGGGAGCCCTGGAACGGAGCTTCGTGGAGCTAAGCGGAGCTGAGCGCGAAAGGCCGAGGCACTTTCGG GAATTCACAGTCTGCAGCATTGGGACTGCAAATGCCGTGGCTGGCGCCGTAAAATACAGTGAAAGCGCGGGAGGCTTTTACTACGTGGAG AGTGGCAAGTTGTTCTCCGTAACCAGAAACAGGTTCATTCATTGGCTGAAGGCCGGATGAGGGGCCCCAGTGTTGGAGCCTCAGGAAGAA >In-frame_NUP160_ENST00000532747_chr11_47869400_-_RBM6_ENST00000266022_chr3_50114441_+_338nt ATGGCGGCGGCGGGAGCCCTGGAACGGAGCTTCGTGGAGCTAAGCGGAGCTGAGCGCGAAAGGCCGAGGCACTTTCGGGAATTCACAGTC TGCAGCATTGGGACTGCAAATGCCGTGGCTGGCGCCGTAAAATACAGTGAAAGCGCGGGAGGCTTTTACTACGTGGAGAGTGGCAAGTTG TTCTCCGTAACCAGAAACAGGTTCATTCATTGGCTGAAGGCCGGATGAGGGGCCCCAGTGTTGGAGCCTCAGGAAGAACCAGCAAAAGAC >In-frame_NUP160_ENST00000526870_chr11_47869400_-_RBM6_ENST00000443081_chr3_50114441_+_440nt ATGCTTCACCTGTCCGCAGCTCCGCCCGCCCCACCCCCGGAAGTGACGGCGACCGCGCGGCCCTGCCTTTGTTCCGTTGGGCGTCGCGGC GACGGCGGGAAGATGGCGGCGGCGGGAGCCCTGGAACGGAGCTTCGTGGAGCTAAGCGGAGCTGAGCGCGAAAGGCCGAGGCACTTTCGG GAATTCACAGTCTGCAGCATTGGGACTGCAAATGCCGTGGCTGGCGCCGTAAAATACAGTGAAAGCGCGGGAGGCTTTTACTACGTGGAG AGTGGCAAGTTGTTCTCCGTAACCAGAAACAGGTTCATTCATTGGCTGAAGGCCGGATGAGGGGCCCCAGTGTTGGAGCCTCAGGAAGAA >In-frame_NUP160_ENST00000526870_chr11_47869400_-_RBM6_ENST00000539992_chr3_50114441_+_440nt ATGCTTCACCTGTCCGCAGCTCCGCCCGCCCCACCCCCGGAAGTGACGGCGACCGCGCGGCCCTGCCTTTGTTCCGTTGGGCGTCGCGGC GACGGCGGGAAGATGGCGGCGGCGGGAGCCCTGGAACGGAGCTTCGTGGAGCTAAGCGGAGCTGAGCGCGAAAGGCCGAGGCACTTTCGG GAATTCACAGTCTGCAGCATTGGGACTGCAAATGCCGTGGCTGGCGCCGTAAAATACAGTGAAAGCGCGGGAGGCTTTTACTACGTGGAG AGTGGCAAGTTGTTCTCCGTAACCAGAAACAGGTTCATTCATTGGCTGAAGGCCGGATGAGGGGCCCCAGTGTTGGAGCCTCAGGAAGAA |
| * Fusion transcript sequences (Full-length transcript). |
| >In-frame_NUP160_ENST00000378460_chr11_47869400_-_RBM6_ENST00000443081_chr3_50114441_+_602nt GTGGAAGCCTCGCAACGAAGGGCCGGAGCCGCCTTTCTGCTCCCGGAATGCTTCACCTGTCCGCAGCTCCGCCCGCCCCACCCCCGGAAG TGACGGCGACCGCGCGGCCCTGCCTTTGTTCCGTTGGGCGTCGCGGCGACGGCGGGAAGATGGCGGCGGCGGGAGCCCTGGAACGGAGCT TCGTGGAGCTAAGCGGAGCTGAGCGCGAAAGGCCGAGGCACTTTCGGGAATTCACAGTCTGCAGCATTGGGACTGCAAATGCCGTGGCTG GCGCCGTAAAATACAGTGAAAGCGCGGGAGGCTTTTACTACGTGGAGAGTGGCAAGTTGTTCTCCGTAACCAGAAACAGGTTCATTCATT GGCTGAAGGCCGGATGAGGGGCCCCAGTGTTGGAGCCTCAGGAAGAACCAGCAAAAGACAGTCCAACGAGACTTACCGAGATGCTGTTCG AAGAGTCATGTTTGCTCGATATAAAGAACTCGATTAAGAAAGGAGACAAGTTCCATGGGATACAACCTCCCTCTTGTTTTGTTTGTCTCT >In-frame_NUP160_ENST00000378460_chr11_47869400_-_RBM6_ENST00000539992_chr3_50114441_+_602nt GTGGAAGCCTCGCAACGAAGGGCCGGAGCCGCCTTTCTGCTCCCGGAATGCTTCACCTGTCCGCAGCTCCGCCCGCCCCACCCCCGGAAG TGACGGCGACCGCGCGGCCCTGCCTTTGTTCCGTTGGGCGTCGCGGCGACGGCGGGAAGATGGCGGCGGCGGGAGCCCTGGAACGGAGCT TCGTGGAGCTAAGCGGAGCTGAGCGCGAAAGGCCGAGGCACTTTCGGGAATTCACAGTCTGCAGCATTGGGACTGCAAATGCCGTGGCTG GCGCCGTAAAATACAGTGAAAGCGCGGGAGGCTTTTACTACGTGGAGAGTGGCAAGTTGTTCTCCGTAACCAGAAACAGGTTCATTCATT GGCTGAAGGCCGGATGAGGGGCCCCAGTGTTGGAGCCTCAGGAAGAACCAGCAAAAGACAGTCCAACGAGACTTACCGAGATGCTGTTCG AAGAGTCATGTTTGCTCGATATAAAGAACTCGATTAAGAAAGGAGACAAGTTCCATGGGATACAACCTCCCTCTTGTTTTGTTTGTCTCT >In-frame_NUP160_ENST00000532747_chr11_47869400_-_RBM6_ENST00000266022_chr3_50114441_+_467nt GACGGCGGGAAGATGGCGGCGGCGGGAGCCCTGGAACGGAGCTTCGTGGAGCTAAGCGGAGCTGAGCGCGAAAGGCCGAGGCACTTTCGG GAATTCACAGTCTGCAGCATTGGGACTGCAAATGCCGTGGCTGGCGCCGTAAAATACAGTGAAAGCGCGGGAGGCTTTTACTACGTGGAG AGTGGCAAGTTGTTCTCCGTAACCAGAAACAGGTTCATTCATTGGCTGAAGGCCGGATGAGGGGCCCCAGTGTTGGAGCCTCAGGAAGAA CCAGCAAAAGACAGTCCAACGAGACTTACCGAGATGCTGTTCGAAGAGTCATGTTTGCTCGATATAAAGAACTCGATTAAGAAAGGAGAC AAGTTCCATGGGATACAACCTCCCTCTTGTTTTGTTTGTCTCTCCTTTTCTTTTGTTACTGTTCTTGCTGCTAGAACTTTTTTAAATAAA >In-frame_NUP160_ENST00000526870_chr11_47869400_-_RBM6_ENST00000443081_chr3_50114441_+_690nt CCGGCCACTGGAAGGTTCCCGCAGATAGAGTCTGCCTCCCCTGCCCCCTTCTCTTCTGGATTCCTCGCTGCCCACCCTCATTCTCCCGGT GGAAGCCTCGCAACGAAGGGCCGGAGCCGCCTTTCTGCTCCCGGAATGCTTCACCTGTCCGCAGCTCCGCCCGCCCCACCCCCGGAAGTG ACGGCGACCGCGCGGCCCTGCCTTTGTTCCGTTGGGCGTCGCGGCGACGGCGGGAAGATGGCGGCGGCGGGAGCCCTGGAACGGAGCTTC GTGGAGCTAAGCGGAGCTGAGCGCGAAAGGCCGAGGCACTTTCGGGAATTCACAGTCTGCAGCATTGGGACTGCAAATGCCGTGGCTGGC GCCGTAAAATACAGTGAAAGCGCGGGAGGCTTTTACTACGTGGAGAGTGGCAAGTTGTTCTCCGTAACCAGAAACAGGTTCATTCATTGG CTGAAGGCCGGATGAGGGGCCCCAGTGTTGGAGCCTCAGGAAGAACCAGCAAAAGACAGTCCAACGAGACTTACCGAGATGCTGTTCGAA GAGTCATGTTTGCTCGATATAAAGAACTCGATTAAGAAAGGAGACAAGTTCCATGGGATACAACCTCCCTCTTGTTTTGTTTGTCTCTCC >In-frame_NUP160_ENST00000526870_chr11_47869400_-_RBM6_ENST00000539992_chr3_50114441_+_690nt CCGGCCACTGGAAGGTTCCCGCAGATAGAGTCTGCCTCCCCTGCCCCCTTCTCTTCTGGATTCCTCGCTGCCCACCCTCATTCTCCCGGT GGAAGCCTCGCAACGAAGGGCCGGAGCCGCCTTTCTGCTCCCGGAATGCTTCACCTGTCCGCAGCTCCGCCCGCCCCACCCCCGGAAGTG ACGGCGACCGCGCGGCCCTGCCTTTGTTCCGTTGGGCGTCGCGGCGACGGCGGGAAGATGGCGGCGGCGGGAGCCCTGGAACGGAGCTTC GTGGAGCTAAGCGGAGCTGAGCGCGAAAGGCCGAGGCACTTTCGGGAATTCACAGTCTGCAGCATTGGGACTGCAAATGCCGTGGCTGGC GCCGTAAAATACAGTGAAAGCGCGGGAGGCTTTTACTACGTGGAGAGTGGCAAGTTGTTCTCCGTAACCAGAAACAGGTTCATTCATTGG CTGAAGGCCGGATGAGGGGCCCCAGTGTTGGAGCCTCAGGAAGAACCAGCAAAAGACAGTCCAACGAGACTTACCGAGATGCTGTTCGAA GAGTCATGTTTGCTCGATATAAAGAACTCGATTAAGAAAGGAGACAAGTTCCATGGGATACAACCTCCCTCTTGTTTTGTTTGTCTCTCC |
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FusionGenePPI for NUP160_RBM6 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| NUP160 | MAGED1, NUP107, NUP43, SEC13, USP12, USP19, DISC1, SIRT7, CUL3, NUP37, AHCTF1, EXOSC1, LATS2, SEH1L, SART3, ESRRG, CUL7, OBSL1, EED, CA14, PNKD, SCN2B, NTRK1, NUP133, NUP85, IFI16, WEE1, NUP50, LINC00528, POM121, RPL26L1, FAM102A, VASP, STX5, LEMD3, RANBP2, NUP98, PGRMC2, NUP153, TMPO, B9D2, KPNB1, FOXB1, FOXI2, GAN, FOXP3, FOXQ1, ZNF746, UXS1, VASN, TMEM206, ZNF785, SIGLECL1, CD70, RAF1, BRCA1 | RBM6 | SIRT7, TAF7, SF3B3, ASB12, ASB18, EEF1G, SHMT2, NXF1, FGL1, HNRNPA1, PPP1CB, EMC2, MATR3, PAPD5, MMGT1, NAGK, MITF, CEPT1, ALS2, ZC3H18, PAK7, TRIM25, BRCA1 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for NUP160_RBM6 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for NUP160_RBM6 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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