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Fusion gene ID: 24743 |
FusionGeneSummary for NPNT_GSTCD |
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Fusion gene information | Fusion gene name: NPNT_GSTCD | Fusion gene ID: 24743 | Hgene | Tgene | Gene symbol | NPNT | GSTCD | Gene ID | 255743 | 79807 |
Gene name | nephronectin | glutathione S-transferase C-terminal domain containing | |
Synonyms | EGFL6L|POEM | - | |
Cytomap | 4q24 | 4q24 | |
Type of gene | protein-coding | protein-coding | |
Description | nephronectinpreosteoblast EGF-like repeat protein with MAM domain | glutathione S-transferase C-terminal domain-containing protein | |
Modification date | 20180527 | 20180523 | |
UniProtAcc | Q6UXI9 | Q8NEC7 | |
Ensembl transtripts involved in fusion gene | ENST00000379987, ENST00000453617, ENST00000427316, ENST00000514622, ENST00000305572, ENST00000506666, ENST00000513430, | ENST00000515255, ENST00000394730, ENST00000515279, ENST00000360505, ENST00000394728, ENST00000507281, | |
Fusion gene scores | * DoF score | 3 X 3 X 2=18 | 4 X 2 X 3=24 |
# samples | 3 | 4 | |
** MAII score | log2(3/18*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(4/24*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: NPNT [Title/Abstract] AND GSTCD [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | LGG | TCGA-QH-A6CV-01A | NPNT | chr4 | 106819158 | + | GSTCD | chr4 | 106744111 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-3UTR | ENST00000379987 | ENST00000515255 | NPNT | chr4 | 106819158 | + | GSTCD | chr4 | 106744111 | + |
5CDS-3UTR | ENST00000379987 | ENST00000394730 | NPNT | chr4 | 106819158 | + | GSTCD | chr4 | 106744111 | + |
5CDS-3UTR | ENST00000379987 | ENST00000515279 | NPNT | chr4 | 106819158 | + | GSTCD | chr4 | 106744111 | + |
5CDS-3UTR | ENST00000379987 | ENST00000360505 | NPNT | chr4 | 106819158 | + | GSTCD | chr4 | 106744111 | + |
5CDS-3UTR | ENST00000379987 | ENST00000394728 | NPNT | chr4 | 106819158 | + | GSTCD | chr4 | 106744111 | + |
5CDS-intron | ENST00000379987 | ENST00000507281 | NPNT | chr4 | 106819158 | + | GSTCD | chr4 | 106744111 | + |
5CDS-3UTR | ENST00000453617 | ENST00000515255 | NPNT | chr4 | 106819158 | + | GSTCD | chr4 | 106744111 | + |
5CDS-3UTR | ENST00000453617 | ENST00000394730 | NPNT | chr4 | 106819158 | + | GSTCD | chr4 | 106744111 | + |
5CDS-3UTR | ENST00000453617 | ENST00000515279 | NPNT | chr4 | 106819158 | + | GSTCD | chr4 | 106744111 | + |
5CDS-3UTR | ENST00000453617 | ENST00000360505 | NPNT | chr4 | 106819158 | + | GSTCD | chr4 | 106744111 | + |
5CDS-3UTR | ENST00000453617 | ENST00000394728 | NPNT | chr4 | 106819158 | + | GSTCD | chr4 | 106744111 | + |
5CDS-intron | ENST00000453617 | ENST00000507281 | NPNT | chr4 | 106819158 | + | GSTCD | chr4 | 106744111 | + |
5CDS-3UTR | ENST00000427316 | ENST00000515255 | NPNT | chr4 | 106819158 | + | GSTCD | chr4 | 106744111 | + |
5CDS-3UTR | ENST00000427316 | ENST00000394730 | NPNT | chr4 | 106819158 | + | GSTCD | chr4 | 106744111 | + |
5CDS-3UTR | ENST00000427316 | ENST00000515279 | NPNT | chr4 | 106819158 | + | GSTCD | chr4 | 106744111 | + |
5CDS-3UTR | ENST00000427316 | ENST00000360505 | NPNT | chr4 | 106819158 | + | GSTCD | chr4 | 106744111 | + |
5CDS-3UTR | ENST00000427316 | ENST00000394728 | NPNT | chr4 | 106819158 | + | GSTCD | chr4 | 106744111 | + |
5CDS-intron | ENST00000427316 | ENST00000507281 | NPNT | chr4 | 106819158 | + | GSTCD | chr4 | 106744111 | + |
5CDS-3UTR | ENST00000514622 | ENST00000515255 | NPNT | chr4 | 106819158 | + | GSTCD | chr4 | 106744111 | + |
5CDS-3UTR | ENST00000514622 | ENST00000394730 | NPNT | chr4 | 106819158 | + | GSTCD | chr4 | 106744111 | + |
5CDS-3UTR | ENST00000514622 | ENST00000515279 | NPNT | chr4 | 106819158 | + | GSTCD | chr4 | 106744111 | + |
5CDS-3UTR | ENST00000514622 | ENST00000360505 | NPNT | chr4 | 106819158 | + | GSTCD | chr4 | 106744111 | + |
5CDS-3UTR | ENST00000514622 | ENST00000394728 | NPNT | chr4 | 106819158 | + | GSTCD | chr4 | 106744111 | + |
5CDS-intron | ENST00000514622 | ENST00000507281 | NPNT | chr4 | 106819158 | + | GSTCD | chr4 | 106744111 | + |
5CDS-3UTR | ENST00000305572 | ENST00000515255 | NPNT | chr4 | 106819158 | + | GSTCD | chr4 | 106744111 | + |
5CDS-3UTR | ENST00000305572 | ENST00000394730 | NPNT | chr4 | 106819158 | + | GSTCD | chr4 | 106744111 | + |
5CDS-3UTR | ENST00000305572 | ENST00000515279 | NPNT | chr4 | 106819158 | + | GSTCD | chr4 | 106744111 | + |
5CDS-3UTR | ENST00000305572 | ENST00000360505 | NPNT | chr4 | 106819158 | + | GSTCD | chr4 | 106744111 | + |
5CDS-3UTR | ENST00000305572 | ENST00000394728 | NPNT | chr4 | 106819158 | + | GSTCD | chr4 | 106744111 | + |
5CDS-intron | ENST00000305572 | ENST00000507281 | NPNT | chr4 | 106819158 | + | GSTCD | chr4 | 106744111 | + |
5CDS-3UTR | ENST00000506666 | ENST00000515255 | NPNT | chr4 | 106819158 | + | GSTCD | chr4 | 106744111 | + |
5CDS-3UTR | ENST00000506666 | ENST00000394730 | NPNT | chr4 | 106819158 | + | GSTCD | chr4 | 106744111 | + |
5CDS-3UTR | ENST00000506666 | ENST00000515279 | NPNT | chr4 | 106819158 | + | GSTCD | chr4 | 106744111 | + |
5CDS-3UTR | ENST00000506666 | ENST00000360505 | NPNT | chr4 | 106819158 | + | GSTCD | chr4 | 106744111 | + |
5CDS-3UTR | ENST00000506666 | ENST00000394728 | NPNT | chr4 | 106819158 | + | GSTCD | chr4 | 106744111 | + |
5CDS-intron | ENST00000506666 | ENST00000507281 | NPNT | chr4 | 106819158 | + | GSTCD | chr4 | 106744111 | + |
intron-3UTR | ENST00000513430 | ENST00000515255 | NPNT | chr4 | 106819158 | + | GSTCD | chr4 | 106744111 | + |
intron-3UTR | ENST00000513430 | ENST00000394730 | NPNT | chr4 | 106819158 | + | GSTCD | chr4 | 106744111 | + |
intron-3UTR | ENST00000513430 | ENST00000515279 | NPNT | chr4 | 106819158 | + | GSTCD | chr4 | 106744111 | + |
intron-3UTR | ENST00000513430 | ENST00000360505 | NPNT | chr4 | 106819158 | + | GSTCD | chr4 | 106744111 | + |
intron-3UTR | ENST00000513430 | ENST00000394728 | NPNT | chr4 | 106819158 | + | GSTCD | chr4 | 106744111 | + |
intron-intron | ENST00000513430 | ENST00000507281 | NPNT | chr4 | 106819158 | + | GSTCD | chr4 | 106744111 | + |
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FusionProtFeatures for NPNT_GSTCD |
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Hgene | Tgene |
NPNT | GSTCD |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for NPNT_GSTCD |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for NPNT_GSTCD |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
NPNT | ITGA8 | GSTCD | KDM1A, PRMT6, SUV39H2, BMP7, DAPP1, STAT3, TNS4, CLNK, XPO1, PLA2G10, C5AR2, FZD10, PHF19 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for NPNT_GSTCD |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for NPNT_GSTCD |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | GSTCD | C0033578 | Prostatic Neoplasms | 1 | CTD_human |