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Fusion gene ID: 24668 |
FusionGeneSummary for NPAS3_ARHGAP5 |
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Fusion gene information | Fusion gene name: NPAS3_ARHGAP5 | Fusion gene ID: 24668 | Hgene | Tgene | Gene symbol | NPAS3 | ARHGAP5 | Gene ID | 64067 | 394 |
Gene name | neuronal PAS domain protein 3 | Rho GTPase activating protein 5 | |
Synonyms | MOP6|PASD6|bHLHe12 | GFI2|RhoGAP5|p190-B|p190BRhoGAP | |
Cytomap | 14q13.1 | 14q12 | |
Type of gene | protein-coding | protein-coding | |
Description | neuronal PAS domain-containing protein 3PAS domain-containing protein 6basic-helix-loop-helix-PAS protein MOP6class E basic helix-loop-helix protein 12member of PAS protein 6neuronal PAS3 | rho GTPase-activating protein 5growth factor independent 2p100 RasGAP-associated p105 proteinp105 RhoGAPrho-type GTPase-activating protein 5 | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | Q8IXF0 | Q13017 | |
Ensembl transtripts involved in fusion gene | ENST00000551492, ENST00000346562, ENST00000341321, ENST00000548645, ENST00000356141, ENST00000357798, ENST00000547068, ENST00000551008, ENST00000550662, | ENST00000556611, ENST00000539826, ENST00000396582, ENST00000432921, ENST00000345122, ENST00000433497, | |
Fusion gene scores | * DoF score | 4 X 5 X 3=60 | 4 X 4 X 3=48 |
# samples | 6 | 4 | |
** MAII score | log2(6/60*10)=0 | log2(4/48*10)=-0.263034405833794 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: NPAS3 [Title/Abstract] AND ARHGAP5 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | OV | TCGA-61-2113-01A | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000551492 | ENST00000556611 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
Frame-shift | ENST00000551492 | ENST00000539826 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
5CDS-intron | ENST00000551492 | ENST00000396582 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
5CDS-intron | ENST00000551492 | ENST00000432921 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
5CDS-intron | ENST00000551492 | ENST00000345122 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
5CDS-5UTR | ENST00000551492 | ENST00000433497 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-3CDS | ENST00000346562 | ENST00000556611 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-3CDS | ENST00000346562 | ENST00000539826 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-intron | ENST00000346562 | ENST00000396582 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-intron | ENST00000346562 | ENST00000432921 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-intron | ENST00000346562 | ENST00000345122 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-5UTR | ENST00000346562 | ENST00000433497 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-3CDS | ENST00000341321 | ENST00000556611 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-3CDS | ENST00000341321 | ENST00000539826 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-intron | ENST00000341321 | ENST00000396582 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-intron | ENST00000341321 | ENST00000432921 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-intron | ENST00000341321 | ENST00000345122 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-5UTR | ENST00000341321 | ENST00000433497 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-3CDS | ENST00000548645 | ENST00000556611 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-3CDS | ENST00000548645 | ENST00000539826 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-intron | ENST00000548645 | ENST00000396582 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-intron | ENST00000548645 | ENST00000432921 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-intron | ENST00000548645 | ENST00000345122 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-5UTR | ENST00000548645 | ENST00000433497 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-3CDS | ENST00000356141 | ENST00000556611 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-3CDS | ENST00000356141 | ENST00000539826 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-intron | ENST00000356141 | ENST00000396582 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-intron | ENST00000356141 | ENST00000432921 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-intron | ENST00000356141 | ENST00000345122 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-5UTR | ENST00000356141 | ENST00000433497 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-3CDS | ENST00000357798 | ENST00000556611 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-3CDS | ENST00000357798 | ENST00000539826 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-intron | ENST00000357798 | ENST00000396582 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-intron | ENST00000357798 | ENST00000432921 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-intron | ENST00000357798 | ENST00000345122 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-5UTR | ENST00000357798 | ENST00000433497 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-3CDS | ENST00000547068 | ENST00000556611 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-3CDS | ENST00000547068 | ENST00000539826 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-intron | ENST00000547068 | ENST00000396582 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-intron | ENST00000547068 | ENST00000432921 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-intron | ENST00000547068 | ENST00000345122 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-5UTR | ENST00000547068 | ENST00000433497 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-3CDS | ENST00000551008 | ENST00000556611 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-3CDS | ENST00000551008 | ENST00000539826 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-intron | ENST00000551008 | ENST00000396582 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-intron | ENST00000551008 | ENST00000432921 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-intron | ENST00000551008 | ENST00000345122 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-5UTR | ENST00000551008 | ENST00000433497 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-3CDS | ENST00000550662 | ENST00000556611 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-3CDS | ENST00000550662 | ENST00000539826 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-intron | ENST00000550662 | ENST00000396582 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-intron | ENST00000550662 | ENST00000432921 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-intron | ENST00000550662 | ENST00000345122 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
intron-5UTR | ENST00000550662 | ENST00000433497 | NPAS3 | chr14 | 33404209 | + | ARHGAP5 | chr14 | 32586349 | + |
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FusionProtFeatures for NPAS3_ARHGAP5 |
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Hgene | Tgene |
NPAS3 | ARHGAP5 |
May play a broad role in neurogenesis. May controlregulatory pathways relevant to schizophrenia and to psychoticillness (By similarity). {ECO:0000250}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for NPAS3_ARHGAP5 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for NPAS3_ARHGAP5 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
NPAS3 | ARNT2, TP53 | ARHGAP5 | RND3, RND1, RND2, RHOA, PXN, XRCC6, SMURF1, SMURF2, NPM1, ADRB2, UNK, CDH1, PTPRU, IQCF1, PLK1 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for NPAS3_ARHGAP5 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for NPAS3_ARHGAP5 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | NPAS3 | C0036341 | Schizophrenia | 4 | PSYGENET |
Hgene | NPAS3 | C0005586 | Bipolar Disorder | 3 | PSYGENET |
Hgene | NPAS3 | C0033975 | Psychotic Disorders | 1 | PSYGENET |
Hgene | NPAS3 | C0041696 | Unipolar Depression | 1 | PSYGENET |
Hgene | NPAS3 | C0349204 | Nonorganic psychosis | 1 | PSYGENET |
Hgene | NPAS3 | C1269683 | Major Depressive Disorder | 1 | PSYGENET |