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Fusion gene ID: 24582 |
FusionGeneSummary for NOMO3_INO80E |
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Fusion gene information | Fusion gene name: NOMO3_INO80E | Fusion gene ID: 24582 | Hgene | Tgene | Gene symbol | NOMO3 | INO80E | Gene ID | 408050 | 283899 |
Gene name | NODAL modulator 3 | INO80 complex subunit E | |
Synonyms | Nomo | CCDC95 | |
Cytomap | 16p13.11 | 16p11.2 | |
Type of gene | protein-coding | protein-coding | |
Description | nodal modulator 3pM5 protein 3pM5 protein, middle copy | INO80 complex subunit Ecoiled-coil domain containing 95coiled-coil domain-containing protein 95 | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | P69849 | Q8NBZ0 | |
Ensembl transtripts involved in fusion gene | ENST00000399336, ENST00000263012, ENST00000538468, ENST00000572932, | ENST00000563197, ENST00000304516, ENST00000567705, ENST00000567254, ENST00000563040, | |
Fusion gene scores | * DoF score | 3 X 2 X 3=18 | 1 X 1 X 1=1 |
# samples | 3 | 1 | |
** MAII score | log2(3/18*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(1/1*10)=3.32192809488736 | |
Context | PubMed: NOMO3 [Title/Abstract] AND INO80E [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | LUAD | TCGA-44-2662-01A | NOMO3 | chr16 | 16350015 | + | INO80E | chr16 | 30012079 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000399336 | ENST00000563197 | NOMO3 | chr16 | 16350015 | + | INO80E | chr16 | 30012079 | + |
Frame-shift | ENST00000399336 | ENST00000304516 | NOMO3 | chr16 | 16350015 | + | INO80E | chr16 | 30012079 | + |
Frame-shift | ENST00000399336 | ENST00000567705 | NOMO3 | chr16 | 16350015 | + | INO80E | chr16 | 30012079 | + |
Frame-shift | ENST00000399336 | ENST00000567254 | NOMO3 | chr16 | 16350015 | + | INO80E | chr16 | 30012079 | + |
5CDS-intron | ENST00000399336 | ENST00000563040 | NOMO3 | chr16 | 16350015 | + | INO80E | chr16 | 30012079 | + |
Frame-shift | ENST00000263012 | ENST00000563197 | NOMO3 | chr16 | 16350015 | + | INO80E | chr16 | 30012079 | + |
Frame-shift | ENST00000263012 | ENST00000304516 | NOMO3 | chr16 | 16350015 | + | INO80E | chr16 | 30012079 | + |
Frame-shift | ENST00000263012 | ENST00000567705 | NOMO3 | chr16 | 16350015 | + | INO80E | chr16 | 30012079 | + |
Frame-shift | ENST00000263012 | ENST00000567254 | NOMO3 | chr16 | 16350015 | + | INO80E | chr16 | 30012079 | + |
5CDS-intron | ENST00000263012 | ENST00000563040 | NOMO3 | chr16 | 16350015 | + | INO80E | chr16 | 30012079 | + |
Frame-shift | ENST00000538468 | ENST00000563197 | NOMO3 | chr16 | 16350015 | + | INO80E | chr16 | 30012079 | + |
Frame-shift | ENST00000538468 | ENST00000304516 | NOMO3 | chr16 | 16350015 | + | INO80E | chr16 | 30012079 | + |
Frame-shift | ENST00000538468 | ENST00000567705 | NOMO3 | chr16 | 16350015 | + | INO80E | chr16 | 30012079 | + |
Frame-shift | ENST00000538468 | ENST00000567254 | NOMO3 | chr16 | 16350015 | + | INO80E | chr16 | 30012079 | + |
5CDS-intron | ENST00000538468 | ENST00000563040 | NOMO3 | chr16 | 16350015 | + | INO80E | chr16 | 30012079 | + |
intron-3CDS | ENST00000572932 | ENST00000563197 | NOMO3 | chr16 | 16350015 | + | INO80E | chr16 | 30012079 | + |
intron-3CDS | ENST00000572932 | ENST00000304516 | NOMO3 | chr16 | 16350015 | + | INO80E | chr16 | 30012079 | + |
intron-3CDS | ENST00000572932 | ENST00000567705 | NOMO3 | chr16 | 16350015 | + | INO80E | chr16 | 30012079 | + |
intron-3CDS | ENST00000572932 | ENST00000567254 | NOMO3 | chr16 | 16350015 | + | INO80E | chr16 | 30012079 | + |
intron-intron | ENST00000572932 | ENST00000563040 | NOMO3 | chr16 | 16350015 | + | INO80E | chr16 | 30012079 | + |
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FusionProtFeatures for NOMO3_INO80E |
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Hgene | Tgene |
NOMO3 | INO80E |
May antagonize Nodal signaling. {ECO:0000250}. | Putative regulatory component of the chromatinremodeling INO80 complex which is involved in transcriptionalregulation, DNA replication and probably DNA repair. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for NOMO3_INO80E |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for NOMO3_INO80E |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
NOMO3 | RYK, UBQLN4, LIG4, FBXO6, TMEM25, EWSR1, FPR2, TPCN2 | INO80E | UCHL5, RUVBL2, INO80, NFRKB, TCF3, ACTR5, ACTR8, INO80B, YY1, INO80D, MCRS1, RUVBL1, ACTL6A, INO80C, TFPT, TFAP4, NHLH1, IKBKG, GEM, KPNA2, PRKAA1, PSMA1, SDCBP, TNFAIP8, TBRG1, MORN4, FAM124A, LRRC46, CCNDBP1, APPL1, CRK, BCL7A |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for NOMO3_INO80E |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for NOMO3_INO80E |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |