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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 2414

FusionGeneSummary for ARHGAP24_NOA1

check button Fusion gene summary
Fusion gene informationFusion gene name: ARHGAP24_NOA1
Fusion gene ID: 2414
HgeneTgene
Gene symbol

ARHGAP24

NOA1

Gene ID

83478

84273

Gene nameRho GTPase activating protein 24nitric oxide associated 1
SynonymsFILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAPC4orf14|MTG3|hAtNOS1|hNOA1|mAtNOS1
Cytomap

4q21.23-q21.3

4q12

Type of geneprotein-codingprotein-coding
Descriptionrho GTPase-activating protein 24RAC1- and CDC42-specific GTPase-activating protein of 72 kDafilamin-A-associated RhoGAPrhoGAP of 73 kDasarcoma antigen NY-SAR-88nitric oxide-associated protein 1mitochondrial GTPase 3 homolognitric oxide synthase, mitochondrial (putative)putative ortholog of Arabidopsis mitochondrial nitric oxide synthase
Modification date2018051920180522
UniProtAcc

Q8N264

Q8NC60

Ensembl transtripts involved in fusion geneENST00000395184, ENST00000503995, 
ENST00000506421, ENST00000395183, 
ENST00000264343, 
ENST00000264230, 
Fusion gene scores* DoF score5 X 6 X 4=1202 X 1 X 2=4
# samples 62
** MAII scorelog2(6/120*10)=-1
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(2/4*10)=2.32192809488736
Context

PubMed: ARHGAP24 [Title/Abstract] AND NOA1 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGALDBRCATCGA-E2-A1IO-01AARHGAP24chr4

86643125

+NOA1chr4

57840188

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000395184ENST00000264230ARHGAP24chr4

86643125

+NOA1chr4

57840188

-
In-frameENST00000503995ENST00000264230ARHGAP24chr4

86643125

+NOA1chr4

57840188

-
3UTR-3CDSENST00000506421ENST00000264230ARHGAP24chr4

86643125

+NOA1chr4

57840188

-
intron-3CDSENST00000395183ENST00000264230ARHGAP24chr4

86643125

+NOA1chr4

57840188

-
intron-3CDSENST00000264343ENST00000264230ARHGAP24chr4

86643125

+NOA1chr4

57840188

-

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FusionProtFeatures for ARHGAP24_NOA1


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
ARHGAP24

Q8N264

NOA1

Q8NC60

Rho GTPase-activating protein involved in cell polarity,cell morphology and cytoskeletal organization. Acts as a GTPaseactivator for the Rac-type GTPase by converting it to an inactiveGDP-bound state. Controls actin remodeling by inactivating Racdownstream of Rho leading to suppress leading edge protrusion andpromotes cell retraction to achieve cellular polarity. Able tosuppress RAC1 and CDC42 activity in vitro. Overexpression inducescell rounding with partial or complete disruption of actin stressfibers and formation of membrane ruffles, lamellipodia, andfilopodia. Isoform 2 is a vascular cell-specific GAP involved inmodulation of angiogenesis. {ECO:0000269|PubMed:15302923,ECO:0000269|PubMed:15611138, ECO:0000269|PubMed:16862148}. Involved in regulation of mitochondrial proteintranslation and respiration. Plays a role in mitochondria-mediatedcell death. May act as a scaffolding protein or stabilizer ofrespiratory chain supercomplexes. Binds GTP.{ECO:0000269|PubMed:19103604}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
>>>>>>>>>>>>
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneARHGAP24chr4:86643125chr4:57840188ENST00000264343+17649_729-220656Coiled coilOntology_term=ECO:0000255
HgeneARHGAP24chr4:86643125chr4:57840188ENST00000395183+18649_729-93654Coiled coilOntology_term=ECO:0000255
HgeneARHGAP24chr4:86643125chr4:57840188ENST00000395184+310649_72989749Coiled coilOntology_term=ECO:0000255
HgeneARHGAP24chr4:86643125chr4:57840188ENST00000503995+36649_72989247Coiled coilOntology_term=ECO:0000255
HgeneARHGAP24chr4:86643125chr4:57840188ENST00000264343+17135_329-220656DomainRho-GAP
HgeneARHGAP24chr4:86643125chr4:57840188ENST00000264343+1719_125-220656DomainPH
HgeneARHGAP24chr4:86643125chr4:57840188ENST00000395183+18135_329-93654DomainRho-GAP
HgeneARHGAP24chr4:86643125chr4:57840188ENST00000395183+1819_125-93654DomainPH
HgeneARHGAP24chr4:86643125chr4:57840188ENST00000395184+310135_32989749DomainRho-GAP
HgeneARHGAP24chr4:86643125chr4:57840188ENST00000395184+31019_12589749DomainPH
HgeneARHGAP24chr4:86643125chr4:57840188ENST00000503995+36135_32989247DomainRho-GAP
HgeneARHGAP24chr4:86643125chr4:57840188ENST00000503995+3619_12589247DomainPH
TgeneNOA1chr4:86643125chr4:57840188ENST00000264230-07202_503381699DomainCP-type G


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FusionGeneSequence for ARHGAP24_NOA1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.
>In-frame_ARHGAP24_ENST00000395184_chr4_86643125_+_NOA1_ENST00000264230_chr4_57840188_-_407aa
MEENNDSTENPQQGQGRQNAIKCGWLRKQGGFVKTWHTRWFVLKGDQLYYFKDEDETKPLGTIFLPGNKVSEHPCNEENPGKFLFEVVPG
TTLNLLKFPICNPTPYRMFKRHQRLKKDSTQAEEDLSEQEQNQLNVLKKHGYVVGRVGRTFLYSEEQKDNIPFEFDADSLAFDMENDPVM
GTHKSTKQVELTAQDVKDAHWFYDTPGITKENCILNLLTEKEVNIVLPTQSIVPRTFVLKPGMVLFLGAIGRIDFLQGNQSAWFTVVASN
ILPVHITSLDRADALYQKHAGHTLLQIPMGGKERMAGFPPLVAEDIMLKEGLGASEAVADIKFSSAGWVSVTPNFKDRLHLRGYTPEGTV

>In-frame_ARHGAP24_ENST00000503995_chr4_86643125_+_NOA1_ENST00000264230_chr4_57840188_-_407aa
MEENNDSTENPQQGQGRQNAIKCGWLRKQGGFVKTWHTRWFVLKGDQLYYFKDEDETKPLGTIFLPGNKVSEHPCNEENPGKFLFEVVPG
TTLNLLKFPICNPTPYRMFKRHQRLKKDSTQAEEDLSEQEQNQLNVLKKHGYVVGRVGRTFLYSEEQKDNIPFEFDADSLAFDMENDPVM
GTHKSTKQVELTAQDVKDAHWFYDTPGITKENCILNLLTEKEVNIVLPTQSIVPRTFVLKPGMVLFLGAIGRIDFLQGNQSAWFTVVASN
ILPVHITSLDRADALYQKHAGHTLLQIPMGGKERMAGFPPLVAEDIMLKEGLGASEAVADIKFSSAGWVSVTPNFKDRLHLRGYTPEGTV


* Fusion transcript sequences (only coding sequence (CDS) region).
>In-frame_ARHGAP24_ENST00000395184_chr4_86643125_+_NOA1_ENST00000264230_chr4_57840188_-_1221nt
ATGGAGGAGAACAATGACTCCACGGAGAACCCCCAACAAGGCCAAGGGCGGCAGAATGCCATCAAGTGTGGGTGGCTGAGGAAGCAAGGA
GGCTTTGTCAAGACTTGGCATACTCGCTGGTTTGTGCTCAAGGGGGATCAGCTCTATTATTTCAAAGATGAAGATGAAACCAAGCCCTTG
GGTACTATTTTTCTGCCTGGAAATAAAGTTTCTGAGCATCCCTGCAATGAAGAGAACCCAGGGAAGTTCCTTTTTGAAGTAGTTCCAGGT
ACTACATTAAACCTTCTGAAGTTTCCTATTTGCAACCCAACTCCTTACAGAATGTTTAAAAGGCATCAAAGACTTAAAAAAGATTCAACT
CAAGCTGAAGAAGATCTTAGTGAGCAAGAACAAAATCAGCTTAATGTCCTCAAAAAGCATGGTTATGTCGTAGGAAGAGTTGGAAGGACA
TTCTTGTATTCAGAAGAACAGAAGGATAACATTCCCTTTGAGTTTGATGCTGATTCACTTGCCTTTGACATGGAAAATGACCCTGTTATG
GGTACACACAAATCCACCAAACAAGTAGAATTGACTGCACAAGATGTGAAAGATGCCCACTGGTTTTATGACACCCCTGGAATTACAAAA
GAAAATTGTATTTTAAATCTTCTAACAGAAAAAGAAGTAAATATTGTTTTGCCAACACAGTCCATTGTTCCAAGAACTTTTGTGCTTAAA
CCAGGAATGGTTCTGTTTTTGGGTGCTATAGGCCGCATAGATTTCCTGCAGGGAAATCAGTCAGCTTGGTTTACAGTCGTGGCTTCCAAC
ATCCTCCCTGTGCATATCACCTCCTTGGACAGGGCAGACGCTCTGTATCAGAAGCATGCAGGTCATACGTTACTCCAGATTCCAATGGGT
GGAAAAGAACGAATGGCAGGATTTCCTCCTCTTGTTGCTGAAGACATTATGTTAAAAGAAGGACTGGGGGCATCTGAAGCAGTGGCCGAC
ATCAAGTTTTCCTCTGCAGGTTGGGTTTCAGTAACACCTAATTTTAAGGACAGACTGCATCTCCGAGGCTATACACCTGAAGGAACAGTT
TTGACCGTCCGGCCCCCTCTCTTGCCATATATTGTTAACATCAAAGGACAGCGCATCAAGAAAAGTGTGGCCTATAAAACCAAGAAGCCT

>In-frame_ARHGAP24_ENST00000503995_chr4_86643125_+_NOA1_ENST00000264230_chr4_57840188_-_1221nt
ATGGAGGAGAACAATGACTCCACGGAGAACCCCCAACAAGGCCAAGGGCGGCAGAATGCCATCAAGTGTGGGTGGCTGAGGAAGCAAGGA
GGCTTTGTCAAGACTTGGCATACTCGCTGGTTTGTGCTCAAGGGGGATCAGCTCTATTATTTCAAAGATGAAGATGAAACCAAGCCCTTG
GGTACTATTTTTCTGCCTGGAAATAAAGTTTCTGAGCATCCCTGCAATGAAGAGAACCCAGGGAAGTTCCTTTTTGAAGTAGTTCCAGGT
ACTACATTAAACCTTCTGAAGTTTCCTATTTGCAACCCAACTCCTTACAGAATGTTTAAAAGGCATCAAAGACTTAAAAAAGATTCAACT
CAAGCTGAAGAAGATCTTAGTGAGCAAGAACAAAATCAGCTTAATGTCCTCAAAAAGCATGGTTATGTCGTAGGAAGAGTTGGAAGGACA
TTCTTGTATTCAGAAGAACAGAAGGATAACATTCCCTTTGAGTTTGATGCTGATTCACTTGCCTTTGACATGGAAAATGACCCTGTTATG
GGTACACACAAATCCACCAAACAAGTAGAATTGACTGCACAAGATGTGAAAGATGCCCACTGGTTTTATGACACCCCTGGAATTACAAAA
GAAAATTGTATTTTAAATCTTCTAACAGAAAAAGAAGTAAATATTGTTTTGCCAACACAGTCCATTGTTCCAAGAACTTTTGTGCTTAAA
CCAGGAATGGTTCTGTTTTTGGGTGCTATAGGCCGCATAGATTTCCTGCAGGGAAATCAGTCAGCTTGGTTTACAGTCGTGGCTTCCAAC
ATCCTCCCTGTGCATATCACCTCCTTGGACAGGGCAGACGCTCTGTATCAGAAGCATGCAGGTCATACGTTACTCCAGATTCCAATGGGT
GGAAAAGAACGAATGGCAGGATTTCCTCCTCTTGTTGCTGAAGACATTATGTTAAAAGAAGGACTGGGGGCATCTGAAGCAGTGGCCGAC
ATCAAGTTTTCCTCTGCAGGTTGGGTTTCAGTAACACCTAATTTTAAGGACAGACTGCATCTCCGAGGCTATACACCTGAAGGAACAGTT
TTGACCGTCCGGCCCCCTCTCTTGCCATATATTGTTAACATCAAAGGACAGCGCATCAAGAAAAGTGTGGCCTATAAAACCAAGAAGCCT


* Fusion transcript sequences (Full-length transcript).
>In-frame_ARHGAP24_ENST00000395184_chr4_86643125_+_NOA1_ENST00000264230_chr4_57840188_-_1767nt
TTGTACTGTATATTTACACATTCACACACAATCACCCTTTCTAACTTCTGGGACTCTTTGCGCAACTGCTAGGATTTCTCAAGTGCATGT
GGCAACACAGCCCAGCTCCGGGTGGAAACCAGCAGGGCTCTGGAGGGGCTCGGAGACCAGGGGAGCTGTCAAGGCTGCGGCGGGGACCAG
AGAGGAGCCTGGCGGGGGTGGCTGGGTGGCTGGGGGAATCCCCCCAACTTCCCATCGCAGGCGCAGCTCTCTCGGCCGCCTATTTCCTCC
GAAACCCGCGCTGCGGAGCAGCCCAGTGCATAGAGTTCAACACTTCCCCTTGTTGTGGAAAGTAAAGGAGCCTCACTACCACCTTTTTTT
CTTTGCGTTTTCTTACTGCTGGTCCTGGGAGCCTTTTCCTTCGGAGCAGCAGCCCTGTCCGGCATCTGTCTTGAGCTCCCAGCAAGGAAA
GTCCATCAGCTTGATAATGGAGGAGAACAATGACTCCACGGAGAACCCCCAACAAGGCCAAGGGCGGCAGAATGCCATCAAGTGTGGGTG
GCTGAGGAAGCAAGGAGGCTTTGTCAAGACTTGGCATACTCGCTGGTTTGTGCTCAAGGGGGATCAGCTCTATTATTTCAAAGATGAAGA
TGAAACCAAGCCCTTGGGTACTATTTTTCTGCCTGGAAATAAAGTTTCTGAGCATCCCTGCAATGAAGAGAACCCAGGGAAGTTCCTTTT
TGAAGTAGTTCCAGGTACTACATTAAACCTTCTGAAGTTTCCTATTTGCAACCCAACTCCTTACAGAATGTTTAAAAGGCATCAAAGACT
TAAAAAAGATTCAACTCAAGCTGAAGAAGATCTTAGTGAGCAAGAACAAAATCAGCTTAATGTCCTCAAAAAGCATGGTTATGTCGTAGG
AAGAGTTGGAAGGACATTCTTGTATTCAGAAGAACAGAAGGATAACATTCCCTTTGAGTTTGATGCTGATTCACTTGCCTTTGACATGGA
AAATGACCCTGTTATGGGTACACACAAATCCACCAAACAAGTAGAATTGACTGCACAAGATGTGAAAGATGCCCACTGGTTTTATGACAC
CCCTGGAATTACAAAAGAAAATTGTATTTTAAATCTTCTAACAGAAAAAGAAGTAAATATTGTTTTGCCAACACAGTCCATTGTTCCAAG
AACTTTTGTGCTTAAACCAGGAATGGTTCTGTTTTTGGGTGCTATAGGCCGCATAGATTTCCTGCAGGGAAATCAGTCAGCTTGGTTTAC
AGTCGTGGCTTCCAACATCCTCCCTGTGCATATCACCTCCTTGGACAGGGCAGACGCTCTGTATCAGAAGCATGCAGGTCATACGTTACT
CCAGATTCCAATGGGTGGAAAAGAACGAATGGCAGGATTTCCTCCTCTTGTTGCTGAAGACATTATGTTAAAAGAAGGACTGGGGGCATC
TGAAGCAGTGGCCGACATCAAGTTTTCCTCTGCAGGTTGGGTTTCAGTAACACCTAATTTTAAGGACAGACTGCATCTCCGAGGCTATAC
ACCTGAAGGAACAGTTTTGACCGTCCGGCCCCCTCTCTTGCCATATATTGTTAACATCAAAGGACAGCGCATCAAGAAAAGTGTGGCCTA
TAAAACCAAGAAGCCTCCTTCCCTTATGTACAACGTGAGGAAGAAGAAAGGAAAGATAAATGTATGAGACCGACCTTGTTCACTCCAGAT

>In-frame_ARHGAP24_ENST00000503995_chr4_86643125_+_NOA1_ENST00000264230_chr4_57840188_-_1643nt
GGGCTCTGGAGGGGCTCGGAGACCAGGGGAGCTGTCAAGGCTGCGGCGGGGACCAGAGAGGAGCCTGGCGGGGGTGGCTGGGTGGCTGGG
GGAATCCCCCCAACTTCCCATCGCAGGCGCAGCTCTCTCGGCCGCCTATTTCCTCCGAAACCCGCGCTGCGGAGCAGCCCAGTGCATAGA
GTTCAACACTTCCCCTTGTTGTGGAAAGTAAAGGAGCCTCACTACCACCTTTTTTTCTTTGCGTTTTCTTACTGCTGGTCCTGGGAGCCT
TTTCCTTCGGAGCAGCAGCCCTGTCCGGCATCTGTCTTGAGCTCCCAGCAAGGAAAGTCCATCAGCTTGATAATGGAGGAGAACAATGAC
TCCACGGAGAACCCCCAACAAGGCCAAGGGCGGCAGAATGCCATCAAGTGTGGGTGGCTGAGGAAGCAAGGAGGCTTTGTCAAGACTTGG
CATACTCGCTGGTTTGTGCTCAAGGGGGATCAGCTCTATTATTTCAAAGATGAAGATGAAACCAAGCCCTTGGGTACTATTTTTCTGCCT
GGAAATAAAGTTTCTGAGCATCCCTGCAATGAAGAGAACCCAGGGAAGTTCCTTTTTGAAGTAGTTCCAGGTACTACATTAAACCTTCTG
AAGTTTCCTATTTGCAACCCAACTCCTTACAGAATGTTTAAAAGGCATCAAAGACTTAAAAAAGATTCAACTCAAGCTGAAGAAGATCTT
AGTGAGCAAGAACAAAATCAGCTTAATGTCCTCAAAAAGCATGGTTATGTCGTAGGAAGAGTTGGAAGGACATTCTTGTATTCAGAAGAA
CAGAAGGATAACATTCCCTTTGAGTTTGATGCTGATTCACTTGCCTTTGACATGGAAAATGACCCTGTTATGGGTACACACAAATCCACC
AAACAAGTAGAATTGACTGCACAAGATGTGAAAGATGCCCACTGGTTTTATGACACCCCTGGAATTACAAAAGAAAATTGTATTTTAAAT
CTTCTAACAGAAAAAGAAGTAAATATTGTTTTGCCAACACAGTCCATTGTTCCAAGAACTTTTGTGCTTAAACCAGGAATGGTTCTGTTT
TTGGGTGCTATAGGCCGCATAGATTTCCTGCAGGGAAATCAGTCAGCTTGGTTTACAGTCGTGGCTTCCAACATCCTCCCTGTGCATATC
ACCTCCTTGGACAGGGCAGACGCTCTGTATCAGAAGCATGCAGGTCATACGTTACTCCAGATTCCAATGGGTGGAAAAGAACGAATGGCA
GGATTTCCTCCTCTTGTTGCTGAAGACATTATGTTAAAAGAAGGACTGGGGGCATCTGAAGCAGTGGCCGACATCAAGTTTTCCTCTGCA
GGTTGGGTTTCAGTAACACCTAATTTTAAGGACAGACTGCATCTCCGAGGCTATACACCTGAAGGAACAGTTTTGACCGTCCGGCCCCCT
CTCTTGCCATATATTGTTAACATCAAAGGACAGCGCATCAAGAAAAGTGTGGCCTATAAAACCAAGAAGCCTCCTTCCCTTATGTACAAC
GTGAGGAAGAAGAAAGGAAAGATAAATGTATGAGACCGACCTTGTTCACTCCAGATATTAACTGTATTGAACACAACAAAATACATTGAA


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FusionGenePPI for ARHGAP24_NOA1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
ARHGAP24APPNOA1ARF1, COL9A2, HSPA8, MPP3, ICT1, GRB10, BOK, LIN28A, ZNF346, TRA2A, TRMT10B, MRPS11, MRPS27, MRPS34, AURKAIP1, FGF8, MRPS15, KLHL22, CCDC59


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for ARHGAP24_NOA1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for ARHGAP24_NOA1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource