![]() |
||||||
|
![]() | |
![]() | |
![]() | |
![]() | |
![]() | |
![]() |
Fusion gene ID: 23971 |
FusionGeneSummary for NEDD4_RFX7 |
![]() |
Fusion gene information | Fusion gene name: NEDD4_RFX7 | Fusion gene ID: 23971 | Hgene | Tgene | Gene symbol | NEDD4 | RFX7 | Gene ID | 4734 | 64864 |
Gene name | neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase | regulatory factor X7 | |
Synonyms | NEDD4-1|RPF1 | RFXDC2 | |
Cytomap | 15q21.3 | 15q21.3 | |
Type of gene | protein-coding | protein-coding | |
Description | E3 ubiquitin-protein ligase NEDD4HECT-type E3 ubiquitin transferase NEDD4cell proliferation-inducing gene 53 proteinreceptor-potentiating factor 1 | DNA-binding protein RFX7regulatory factor X domain containing 2regulatory factor X domain-containing protein 2regulatory factor X, 7 | |
Modification date | 20180527 | 20180523 | |
UniProtAcc | P46934 | Q2KHR2 | |
Ensembl transtripts involved in fusion gene | ENST00000435532, ENST00000338963, ENST00000508342, ENST00000506154, ENST00000508075, | ENST00000422057, ENST00000317318, ENST00000423270, ENST00000559447, | |
Fusion gene scores | * DoF score | 4 X 4 X 3=48 | 4 X 4 X 3=48 |
# samples | 4 | 5 | |
** MAII score | log2(4/48*10)=-0.263034405833794 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(5/48*10)=0.0588936890535686 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: NEDD4 [Title/Abstract] AND RFX7 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation | Oncogene involved fusion gene, in-frame and retained their domain. Tumor suppressor gene involved fusion gene, in-frame but not retained their domain. Transcription factor involved fusion gene, inframe and retained DNA-binding domain. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
![]() |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | NEDD4 | GO:0006511 | ubiquitin-dependent protein catabolic process | 20086093 |
Hgene | NEDD4 | GO:0006622 | protein targeting to lysosome | 17116753 |
Hgene | NEDD4 | GO:0007041 | lysosomal transport | 18544533 |
Hgene | NEDD4 | GO:0010766 | negative regulation of sodium ion transport | 10642508 |
Hgene | NEDD4 | GO:0016567 | protein ubiquitination | 17996703|18305167|25631046|26280536 |
Hgene | NEDD4 | GO:0031623 | receptor internalization | 18544533 |
Hgene | NEDD4 | GO:0032801 | receptor catabolic process | 18544533 |
Hgene | NEDD4 | GO:0034765 | regulation of ion transmembrane transport | 17289006 |
Hgene | NEDD4 | GO:0042391 | regulation of membrane potential | 17289006 |
Hgene | NEDD4 | GO:0042921 | glucocorticoid receptor signaling pathway | 8649367 |
Hgene | NEDD4 | GO:0045732 | positive regulation of protein catabolic process | 14973438 |
Hgene | NEDD4 | GO:0046824 | positive regulation of nucleocytoplasmic transport | 17218261 |
Hgene | NEDD4 | GO:0050847 | progesterone receptor signaling pathway | 8649367 |
Hgene | NEDD4 | GO:1901016 | regulation of potassium ion transmembrane transporter activity | 17289006 |
Hgene | NEDD4 | GO:2000650 | negative regulation of sodium ion transmembrane transporter activity | 10642508 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | BRCA | TCGA-AN-A0FW-01A | NEDD4 | chr15 | 56258671 | - | RFX7 | chr15 | 56379707 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000435532 | ENST00000422057 | NEDD4 | chr15 | 56258671 | - | RFX7 | chr15 | 56379707 | - |
5CDS-intron | ENST00000435532 | ENST00000317318 | NEDD4 | chr15 | 56258671 | - | RFX7 | chr15 | 56379707 | - |
5CDS-intron | ENST00000435532 | ENST00000423270 | NEDD4 | chr15 | 56258671 | - | RFX7 | chr15 | 56379707 | - |
5CDS-intron | ENST00000435532 | ENST00000559447 | NEDD4 | chr15 | 56258671 | - | RFX7 | chr15 | 56379707 | - |
intron-3CDS | ENST00000338963 | ENST00000422057 | NEDD4 | chr15 | 56258671 | - | RFX7 | chr15 | 56379707 | - |
intron-intron | ENST00000338963 | ENST00000317318 | NEDD4 | chr15 | 56258671 | - | RFX7 | chr15 | 56379707 | - |
intron-intron | ENST00000338963 | ENST00000423270 | NEDD4 | chr15 | 56258671 | - | RFX7 | chr15 | 56379707 | - |
intron-intron | ENST00000338963 | ENST00000559447 | NEDD4 | chr15 | 56258671 | - | RFX7 | chr15 | 56379707 | - |
intron-3CDS | ENST00000508342 | ENST00000422057 | NEDD4 | chr15 | 56258671 | - | RFX7 | chr15 | 56379707 | - |
intron-intron | ENST00000508342 | ENST00000317318 | NEDD4 | chr15 | 56258671 | - | RFX7 | chr15 | 56379707 | - |
intron-intron | ENST00000508342 | ENST00000423270 | NEDD4 | chr15 | 56258671 | - | RFX7 | chr15 | 56379707 | - |
intron-intron | ENST00000508342 | ENST00000559447 | NEDD4 | chr15 | 56258671 | - | RFX7 | chr15 | 56379707 | - |
intron-3CDS | ENST00000506154 | ENST00000422057 | NEDD4 | chr15 | 56258671 | - | RFX7 | chr15 | 56379707 | - |
intron-intron | ENST00000506154 | ENST00000317318 | NEDD4 | chr15 | 56258671 | - | RFX7 | chr15 | 56379707 | - |
intron-intron | ENST00000506154 | ENST00000423270 | NEDD4 | chr15 | 56258671 | - | RFX7 | chr15 | 56379707 | - |
intron-intron | ENST00000506154 | ENST00000559447 | NEDD4 | chr15 | 56258671 | - | RFX7 | chr15 | 56379707 | - |
intron-3CDS | ENST00000508075 | ENST00000422057 | NEDD4 | chr15 | 56258671 | - | RFX7 | chr15 | 56379707 | - |
intron-intron | ENST00000508075 | ENST00000317318 | NEDD4 | chr15 | 56258671 | - | RFX7 | chr15 | 56379707 | - |
intron-intron | ENST00000508075 | ENST00000423270 | NEDD4 | chr15 | 56258671 | - | RFX7 | chr15 | 56379707 | - |
intron-intron | ENST00000508075 | ENST00000559447 | NEDD4 | chr15 | 56258671 | - | RFX7 | chr15 | 56379707 | - |
Top |
FusionProtFeatures for NEDD4_RFX7 |
![]() |
Hgene | Tgene |
NEDD4 | RFX7 |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | >RFX7 | chr15:56258671 | chr15:56379707 | ENST00000317318 | - | 0 | 10 | 538_541 | 0 | 1374 | Compositional bias | Note=Poly-Ser |
Tgene | >RFX7 | chr15:56258671 | chr15:56379707 | ENST00000423270 | - | 0 | 9 | 538_541 | 0 | 1461 | Compositional bias | Note=Poly-Ser |
Tgene | >RFX7 | chr15:56258671 | chr15:56379707 | ENST00000317318 | - | 0 | 10 | 11_86 | 0 | 1374 | DNA binding | RFX-type winged-helix |
Tgene | >RFX7 | chr15:56258671 | chr15:56379707 | ENST00000423270 | - | 0 | 9 | 11_86 | 0 | 1461 | DNA binding | RFX-type winged-helix |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000338963 | - | 1 | 22 | 68_215 | -100 | 1248 | Compositional bias | Note=Ser-rich |
Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000435532 | - | 2 | 29 | 68_215 | 39 | 901 | Compositional bias | Note=Ser-rich |
Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000506154 | - | 1 | 25 | 68_215 | -93 | 1304 | Compositional bias | Note=Ser-rich |
Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000508342 | - | 1 | 25 | 68_215 | -100 | 1320 | Compositional bias | Note=Ser-rich |
Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000338963 | - | 1 | 22 | 610_643 | -100 | 1248 | Domain | WW 1 |
Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000338963 | - | 1 | 22 | 767_800 | -100 | 1248 | Domain | WW 2 |
Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000338963 | - | 1 | 22 | 840_873 | -100 | 1248 | Domain | WW 3 |
Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000338963 | - | 1 | 22 | 892_925 | -100 | 1248 | Domain | WW 4 |
Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000338963 | - | 1 | 22 | 984_1318 | -100 | 1248 | Domain | HECT |
Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000435532 | - | 2 | 29 | 610_643 | 39 | 901 | Domain | WW 1 |
Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000435532 | - | 2 | 29 | 767_800 | 39 | 901 | Domain | WW 2 |
Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000435532 | - | 2 | 29 | 840_873 | 39 | 901 | Domain | WW 3 |
Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000435532 | - | 2 | 29 | 892_925 | 39 | 901 | Domain | WW 4 |
Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000435532 | - | 2 | 29 | 984_1318 | 39 | 901 | Domain | HECT |
Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000506154 | - | 1 | 25 | 610_643 | -93 | 1304 | Domain | WW 1 |
Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000506154 | - | 1 | 25 | 767_800 | -93 | 1304 | Domain | WW 2 |
Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000506154 | - | 1 | 25 | 840_873 | -93 | 1304 | Domain | WW 3 |
Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000506154 | - | 1 | 25 | 892_925 | -93 | 1304 | Domain | WW 4 |
Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000506154 | - | 1 | 25 | 984_1318 | -93 | 1304 | Domain | HECT |
Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000508342 | - | 1 | 25 | 610_643 | -100 | 1320 | Domain | WW 1 |
Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000508342 | - | 1 | 25 | 767_800 | -100 | 1320 | Domain | WW 2 |
Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000508342 | - | 1 | 25 | 840_873 | -100 | 1320 | Domain | WW 3 |
Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000508342 | - | 1 | 25 | 892_925 | -100 | 1320 | Domain | WW 4 |
Hgene | >NEDD4 | chr15:56258671 | chr15:56379707 | ENST00000508342 | - | 1 | 25 | 984_1318 | -100 | 1320 | Domain | HECT |
Top |
FusionGeneSequence for NEDD4_RFX7 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_NEDD4_ENST00000435532_chr15_56258671_-_RFX7_ENST00000422057_chr15_56379707_-_53aa |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_NEDD4_ENST00000435532_chr15_56258671_-_RFX7_ENST00000422057_chr15_56379707_-_161nt ATGGCAACTTGCGCGGTGGAGGTGTTCGGGCTCCTGGAGGACGAGGAAAATTCACGAATTGTGAGAGTAAGAGTTATAGCCGGAATAGGC |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_NEDD4_ENST00000435532_chr15_56258671_-_RFX7_ENST00000422057_chr15_56379707_-_352nt GGCCTTTTCCCGCCGCGCTGCCGGGTGCCGCTAGTGCCCGCTCGCCGCGGGAGGCGCTGCTGTCGCTGAGGGAGCGCCTCCTCCTCTTCC TCCAACTCTTCCCCGCCTCCTCCCGCTTCTCCTCCTCCTCCTCCACAGTTGCCTGCCCTGGGCGGGGGCGAGCGCGTCCGGTTTGCTGGA AGCGTTCGGAAATGGCAACTTGCGCGGTGGAGGTGTTCGGGCTCCTGGAGGACGAGGAAAATTCACGAATTGTGAGAGTAAGAGTTATAG |
Top |
FusionGenePPI for NEDD4_RFX7 |
![]() |
![]() |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
NEDD4 | UBE2D2, CBLB, PMEPA1, NDFIP2, SGK1, IGF1R, UBE2D3, UBE2E1, UBE2L3, SCNN1A, SCNN1B, SCNN1G, HGS, N4BP3, CDC25C, SCAMP3, AP1G2, ARRB2, ARRB1, TTYH3, TTYH2, PTEN, NEDD4, ISG15, POLR2A, LAPTM5, GGA3, SLC6A3, PDCD6IP, GABARAP, GABARAPL1, GABARAPL2, MLANA, TP73, SMAD2, SMAD3, SMAD6, SMAD7, SMURF2, SKIL, SCN5A, NTRK1, CPSF6, UBAP2L, GRB10, GJA1, RAPGEF2, GRIA1, SLC12A3, FGFR1, DCUN1D1, SLC38A3, SCN8A, EPS15, SLC11A2, TNK2, TNIK, RAP2A, MTMR4, RNF11, ARRDC3, ADRB2, SLC9A1, RASGEF1A, UBOX5, RANBP10, CAMK1D, ABL2, MAPKAPK3, YY1, WBP2, RTF1, EGFR, ANKRD13D, TRIM52, TRIM44, BAIAP2, PLK2, CUEDC1, FLT1, RAD51AP1, SAMSN1, LUC7L2, CLIC2, CALCOCO1, FYN, MAP3K3, ABL1, CDK5, STK31, AKT1, MARK2, ERMN, SGK2, PRKX, MAP3K5, MAP3K2, TOM1L2, RPS6KB1, C11orf63, TOM1, MARK4, RPS6KA3, PDGFRB, SPANXN3, GBA, AKT3, DDX54, FGFR2, GRK7, SFTPC, CFTR, SNCA, PSMD4, SPRY2, SPRY1, UBC, ERBB4, ERG, KCNQ1, ARRDC1, TEAD2, SMAD1, AMPD2, BMPR1A, TSTA3, FGF12, FKBP3, KCNAB1, KCNAB2, MAP4K5, MOB3A, NHP2, NSRP1, RNF7, EBAG9, MRPL19, RASL11B, SAAL1, KIAA1598, SIVA1, SYT1, TCP11L1, TBC1D7, TCEANC, WIBG, YES1, ASPSCR1, HMCES, FGF21, RBCK1, IRS1, KIFC3, SP140L, PARP16, PRR16, RPAP3, SLC23A2, SEPT9, TAF1B, PRRG1, UBE2M, SRMS, CDK5R1, CAMK4, FES, PLK1, TBK1, STK24, STK25, STK26, RPS6KA4, RAF1, GRK4, WEE1, CLK3, EPHA5, STK4, AURKC, SYK, DYRK4, PKN2, PRKG2, FLT4, CAMKK2, SULF1, RFT1, MAP2, ANXA9, RAC1, DVL1, AMOT, SLC5A7, TSG101, JUN, KIF26B, LAPTM4A, LAPTM4B, RPSA, IL2RB, IL2RG, LITAF, BECN1, ANXA13, TRPV6, NFE2, LRRK1, MDM2, BRCA2, UBE2D1, DMD, MGRN1, FBXL15, SMAD5, PPARG, GRIN2D, GRIN2A, URI1, POLR2B, POLR2C, POLR2E, POLR3A, RUVBL1, SMARCC1, ARID1A, THRAP3, CPSF1, NUDT21, DDX3X, DHX30, RPAP2, HNRNPK, HNRNPL, HNRNPU, HNRNPUL1, PRPF8, SRSF7, EPRS, RPS3A, DIAPH1, AMOTL1, RAPGEF6, POLR2M, CAD, CUL1, BTRC, FBXL18, RBX1, SKP1, CSNK1D, ERBB3, CCNH, GUCD1, YOD1, SMO, PTCH1, CUL5, SRC, MYCN, LATS1, FAM189B, TMEM51, TMEM171, FAM189A2, WBP1, TMEM255A, TMEM92, TMEM52B, LDLRAD4, ABCB1, IMPDH2, PAX7, SAV1, LATS2, PDLIM7, GLIS3, HSF1, ABCG1, IRS2, IFITM3, NDFIP1, THOC1, SUV420H2, DDIT4, PTK2B, MAP1LC3B, ILDR1, OCLN, TNFRSF19, PRRG3, SUSD6, ERRFI1, PIP5K1C, SLC22A6 | RFX7 | ANKRA2, RFXANK, OTUB1, RFX5 |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
RelatedDrugs for NEDD4_RFX7 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
RelatedDiseases for NEDD4_RFX7 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | NEDD4 | C0005586 | Bipolar Disorder | 1 | PSYGENET |
Hgene | NEDD4 | C0022548 | Keloid | 1 | CTD_human |
Hgene | NEDD4 | C0038325 | Stevens-Johnson Syndrome | 1 | CTD_human |
Hgene | NEDD4 | C0151744 | Myocardial Ischemia | 1 | CTD_human |