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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 23955

FusionGeneSummary for NEDD4L_DCLK2

check button Fusion gene summary
Fusion gene informationFusion gene name: NEDD4L_DCLK2
Fusion gene ID: 23955
HgeneTgene
Gene symbol

NEDD4L

DCLK2

Gene ID

23327

166614

Gene nameneural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligasedoublecortin like kinase 2
SynonymsNEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2
Cytomap

18q21.31

4q31.23-q31.3

Type of geneprotein-codingprotein-coding
DescriptionE3 ubiquitin-protein ligase NEDD4-likeHECT-type E3 ubiquitin transferase NED4Lubiquitin-protein ligase Rsp5serine/threonine-protein kinase DCLK2CaMK-like CREB regulatory kinase 2doublecortin and CaM kinase-like 2doublecortin domain-containing protein 3Bdoublecortin-like and CAM kinase-like 2
Modification date2018052320180523
UniProtAcc

Q96PU5

Q8N568

Ensembl transtripts involved in fusion geneENST00000356462, ENST00000400345, 
ENST00000589054, ENST00000256832, 
ENST00000382850, ENST00000256830, 
ENST00000588516, ENST00000456986, 
ENST00000435432, ENST00000357895, 
ENST00000586263, ENST00000456173, 
ENST00000431212, 
ENST00000296550, 
ENST00000506325, ENST00000302176, 
ENST00000507694, 
Fusion gene scores* DoF score18 X 11 X 9=17822 X 1 X 2=4
# samples 202
** MAII scorelog2(20/1782*10)=-3.1554254317472
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(2/4*10)=2.32192809488736
Context

PubMed: NEDD4L [Title/Abstract] AND DCLK2 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotationTumor suppressor gene involved fusion gene, retained protein feature but frameshift.
DDR (DNA damage repair) gene involved fusion gene, in-frame but not retained their domain.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneNEDD4L

GO:0003254

regulation of membrane depolarization

15217910

HgeneNEDD4L

GO:0006511

ubiquitin-dependent protein catabolic process

21463633

HgeneNEDD4L

GO:0010038

response to metal ion

11244092

HgeneNEDD4L

GO:0016567

protein ubiquitination

15217910|25631046

HgeneNEDD4L

GO:0034765

regulation of ion transmembrane transport

17289006

HgeneNEDD4L

GO:0042391

regulation of membrane potential

17289006

HgeneNEDD4L

GO:0043161

proteasome-mediated ubiquitin-dependent protein catabolic process

21463633

HgeneNEDD4L

GO:0060306

regulation of membrane repolarization

21463633

HgeneNEDD4L

GO:0070936

protein K48-linked ubiquitination

21463633

HgeneNEDD4L

GO:1901016

regulation of potassium ion transmembrane transporter activity

17289006

HgeneNEDD4L

GO:1901017

negative regulation of potassium ion transmembrane transporter activity

21463633

HgeneNEDD4L

GO:1901380

negative regulation of potassium ion transmembrane transport

21463633

HgeneNEDD4L

GO:1902306

negative regulation of sodium ion transmembrane transport

15217910

HgeneNEDD4L

GO:1903861

positive regulation of dendrite extension

23999003

HgeneNEDD4L

GO:2000009

negative regulation of protein localization to cell surface

21463633

HgeneNEDD4L

GO:2000650

negative regulation of sodium ion transmembrane transporter activity

15217910


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGALDPRADTCGA-V1-A8MM-01ANEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
Frame-shiftENST00000356462ENST00000296550NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
Frame-shiftENST00000356462ENST00000506325NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
Frame-shiftENST00000356462ENST00000302176NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
5CDS-intronENST00000356462ENST00000507694NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
Frame-shiftENST00000400345ENST00000296550NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
Frame-shiftENST00000400345ENST00000506325NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
Frame-shiftENST00000400345ENST00000302176NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
5CDS-intronENST00000400345ENST00000507694NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
intron-3CDSENST00000589054ENST00000296550NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
intron-3CDSENST00000589054ENST00000506325NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
intron-3CDSENST00000589054ENST00000302176NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
intron-intronENST00000589054ENST00000507694NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
Frame-shiftENST00000256832ENST00000296550NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
Frame-shiftENST00000256832ENST00000506325NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
Frame-shiftENST00000256832ENST00000302176NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
5CDS-intronENST00000256832ENST00000507694NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
Frame-shiftENST00000382850ENST00000296550NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
Frame-shiftENST00000382850ENST00000506325NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
Frame-shiftENST00000382850ENST00000302176NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
5CDS-intronENST00000382850ENST00000507694NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
Frame-shiftENST00000256830ENST00000296550NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
Frame-shiftENST00000256830ENST00000506325NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
Frame-shiftENST00000256830ENST00000302176NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
5CDS-intronENST00000256830ENST00000507694NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
intron-3CDSENST00000588516ENST00000296550NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
intron-3CDSENST00000588516ENST00000506325NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
intron-3CDSENST00000588516ENST00000302176NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
intron-intronENST00000588516ENST00000507694NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
Frame-shiftENST00000456986ENST00000296550NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
Frame-shiftENST00000456986ENST00000506325NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
Frame-shiftENST00000456986ENST00000302176NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
5CDS-intronENST00000456986ENST00000507694NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
Frame-shiftENST00000435432ENST00000296550NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
Frame-shiftENST00000435432ENST00000506325NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
Frame-shiftENST00000435432ENST00000302176NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
5CDS-intronENST00000435432ENST00000507694NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
Frame-shiftENST00000357895ENST00000296550NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
Frame-shiftENST00000357895ENST00000506325NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
Frame-shiftENST00000357895ENST00000302176NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
5CDS-intronENST00000357895ENST00000507694NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
Frame-shiftENST00000586263ENST00000296550NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
Frame-shiftENST00000586263ENST00000506325NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
Frame-shiftENST00000586263ENST00000302176NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
5CDS-intronENST00000586263ENST00000507694NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
Frame-shiftENST00000456173ENST00000296550NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
Frame-shiftENST00000456173ENST00000506325NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
Frame-shiftENST00000456173ENST00000302176NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
5CDS-intronENST00000456173ENST00000507694NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
Frame-shiftENST00000431212ENST00000296550NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
Frame-shiftENST00000431212ENST00000506325NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
Frame-shiftENST00000431212ENST00000302176NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+
5CDS-intronENST00000431212ENST00000507694NEDD4Lchr18

56040501

+DCLK2chr4

151023630

+

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FusionProtFeatures for NEDD4L_DCLK2


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
NEDD4L

Q96PU5

DCLK2

Q8N568

Protein kinase with a significantly reduced C(a2+)/CAMaffinity and dependence compared to other members of the CaMKfamily. May play a role in the down-regulation of CRE-dependentgene activation probably by phosphorylation of the CREBcoactivator CRTC2/TORC2 and the resulting retention of TORC2 inthe cytoplasm (By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for NEDD4L_DCLK2


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for NEDD4L_DCLK2


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
NEDD4LSFN, NR3C1, ARHGDIA, SCNN1A, SCNN1B, SCNN1G, NEDD4L, AMOT, YWHAG, YWHAZ, PSMD4, YWHAB, TNK2, OCLN, APBB1, TOLLIP, NDFIP1, KCNB1, MAPKAPK3, CLIC2, EFEMP2, HGS, NDFIP2, MAP3K3, VDAC2, ZDHHC3, CAMK1D, RANBP10, CDK5, ABL1, MAGEB1, DMTN, AICDA, MARK2, KCNAB1, FKBP3, DAPK3, BRAF, MAP3K5, DDX54, ZAK, KCNAB3, NTRK1, CUEDC1, RPS6KB2, ABL2, CACNB1, YY1, MAP3K2, BBX, PRKX, ACVR1B, ADAP2, BMPR1A, AKT3, MINK1, AURKC, NSRP1, WIBG, SGK2, UBAC1, RPL30, MERTK, SRMS, SERPINF1, DYRK3, IFRD2, SCD, ROBO3, TRIM41, TMA16, TAF1B, SPAG8, STAC, H1F0, PRR16, KIFC3, RASL10B, PRRG1, CDK3, KCNAB2, FGF12, RNF7, APEX2, MRPL19, TGFB1I1, TBC1D7, NHP2, TMEM55A, CYP26B1, DECR2, SENP2, SIVA1, RASL11B, MAP2, STK40, NUDT16L1, C7orf50, TCEAL2, ZC3HAV1L, MOB3A, TARBP2, ZADH2, WBP2, ELAVL1, YWHAH, SGK1, RAF1, TSC22D3, WNK4, WNK1, IKBKB, SMAD7, AMOTL1, UBE2D2, UBC, SMAD2, SMAD3, YWHAQ, NPC2, MT2A, ATP1B1, CYBRD1, SLC7A7, PBX1, ACY3, HAX1, KIF3B, KCNH2, CAV3, UBE2L3, UBE2K, UBE2D1, UBE2E3, UBE2J2, CDC34, ARRDC3, ARRDC4, MED28, FBXL15, LAPTM5, RNF11, KCNQ1, SGK3, UBE2D3, NOTCH1, AATF, GORAB, UBE2N, HCN1, SMAD6, SLC9A3, SNCA, WNK3, PTCH1, DAZAP2, MOV10, CCDC8, FAM189B, PRRG3, TMEM51, TMEM171, SUSD6, FAM189A2, WBP1, ARRDC1, TMEM92, TMEM52B, LDLRAD4, XPO1, LITAF, SLC22A11, SLC22A8, RHOB, CRYAB, GRB10, KCNA3, ULK1, ERBB3, PTK2B, GRIA1, ILDR1, TNFAIP3, TNFRSF19, LPAR1, EDEM3, TRIM25, SCN5A, UBE2E1, UBE2E2, UBE2L6DCLK2HSP90AA1, TSC22D3, ENO1, KRAS, DCTN1


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for NEDD4L_DCLK2


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for NEDD4L_DCLK2


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneNEDD4LC0020538Hypertensive disease2CTD_human
HgeneNEDD4LC0008925Cleft Palate1CTD_human
HgeneNEDD4LC0014175Endometriosis1CTD_human
HgeneNEDD4LC0039075Syndactyly1CTD_human
HgeneNEDD4LC1868720Periventricular Nodular Heterotopia1CTD_human;ORPHANET