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Fusion gene ID: 23955 |
FusionGeneSummary for NEDD4L_DCLK2 |
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Fusion gene information | Fusion gene name: NEDD4L_DCLK2 | Fusion gene ID: 23955 | Hgene | Tgene | Gene symbol | NEDD4L | DCLK2 | Gene ID | 23327 | 166614 |
Gene name | neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase | doublecortin like kinase 2 | |
Synonyms | NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2 | CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 | |
Cytomap | 18q21.31 | 4q31.23-q31.3 | |
Type of gene | protein-coding | protein-coding | |
Description | E3 ubiquitin-protein ligase NEDD4-likeHECT-type E3 ubiquitin transferase NED4Lubiquitin-protein ligase Rsp5 | serine/threonine-protein kinase DCLK2CaMK-like CREB regulatory kinase 2doublecortin and CaM kinase-like 2doublecortin domain-containing protein 3Bdoublecortin-like and CAM kinase-like 2 | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | Q96PU5 | Q8N568 | |
Ensembl transtripts involved in fusion gene | ENST00000356462, ENST00000400345, ENST00000589054, ENST00000256832, ENST00000382850, ENST00000256830, ENST00000588516, ENST00000456986, ENST00000435432, ENST00000357895, ENST00000586263, ENST00000456173, ENST00000431212, | ENST00000296550, ENST00000506325, ENST00000302176, ENST00000507694, | |
Fusion gene scores | * DoF score | 18 X 11 X 9=1782 | 2 X 1 X 2=4 |
# samples | 20 | 2 | |
** MAII score | log2(20/1782*10)=-3.1554254317472 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(2/4*10)=2.32192809488736 | |
Context | PubMed: NEDD4L [Title/Abstract] AND DCLK2 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation | Tumor suppressor gene involved fusion gene, retained protein feature but frameshift. DDR (DNA damage repair) gene involved fusion gene, in-frame but not retained their domain. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | NEDD4L | GO:0003254 | regulation of membrane depolarization | 15217910 |
Hgene | NEDD4L | GO:0006511 | ubiquitin-dependent protein catabolic process | 21463633 |
Hgene | NEDD4L | GO:0010038 | response to metal ion | 11244092 |
Hgene | NEDD4L | GO:0016567 | protein ubiquitination | 15217910|25631046 |
Hgene | NEDD4L | GO:0034765 | regulation of ion transmembrane transport | 17289006 |
Hgene | NEDD4L | GO:0042391 | regulation of membrane potential | 17289006 |
Hgene | NEDD4L | GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | 21463633 |
Hgene | NEDD4L | GO:0060306 | regulation of membrane repolarization | 21463633 |
Hgene | NEDD4L | GO:0070936 | protein K48-linked ubiquitination | 21463633 |
Hgene | NEDD4L | GO:1901016 | regulation of potassium ion transmembrane transporter activity | 17289006 |
Hgene | NEDD4L | GO:1901017 | negative regulation of potassium ion transmembrane transporter activity | 21463633 |
Hgene | NEDD4L | GO:1901380 | negative regulation of potassium ion transmembrane transport | 21463633 |
Hgene | NEDD4L | GO:1902306 | negative regulation of sodium ion transmembrane transport | 15217910 |
Hgene | NEDD4L | GO:1903861 | positive regulation of dendrite extension | 23999003 |
Hgene | NEDD4L | GO:2000009 | negative regulation of protein localization to cell surface | 21463633 |
Hgene | NEDD4L | GO:2000650 | negative regulation of sodium ion transmembrane transporter activity | 15217910 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | PRAD | TCGA-V1-A8MM-01A | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000356462 | ENST00000296550 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
Frame-shift | ENST00000356462 | ENST00000506325 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
Frame-shift | ENST00000356462 | ENST00000302176 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
5CDS-intron | ENST00000356462 | ENST00000507694 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
Frame-shift | ENST00000400345 | ENST00000296550 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
Frame-shift | ENST00000400345 | ENST00000506325 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
Frame-shift | ENST00000400345 | ENST00000302176 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
5CDS-intron | ENST00000400345 | ENST00000507694 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
intron-3CDS | ENST00000589054 | ENST00000296550 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
intron-3CDS | ENST00000589054 | ENST00000506325 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
intron-3CDS | ENST00000589054 | ENST00000302176 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
intron-intron | ENST00000589054 | ENST00000507694 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
Frame-shift | ENST00000256832 | ENST00000296550 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
Frame-shift | ENST00000256832 | ENST00000506325 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
Frame-shift | ENST00000256832 | ENST00000302176 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
5CDS-intron | ENST00000256832 | ENST00000507694 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
Frame-shift | ENST00000382850 | ENST00000296550 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
Frame-shift | ENST00000382850 | ENST00000506325 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
Frame-shift | ENST00000382850 | ENST00000302176 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
5CDS-intron | ENST00000382850 | ENST00000507694 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
Frame-shift | ENST00000256830 | ENST00000296550 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
Frame-shift | ENST00000256830 | ENST00000506325 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
Frame-shift | ENST00000256830 | ENST00000302176 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
5CDS-intron | ENST00000256830 | ENST00000507694 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
intron-3CDS | ENST00000588516 | ENST00000296550 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
intron-3CDS | ENST00000588516 | ENST00000506325 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
intron-3CDS | ENST00000588516 | ENST00000302176 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
intron-intron | ENST00000588516 | ENST00000507694 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
Frame-shift | ENST00000456986 | ENST00000296550 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
Frame-shift | ENST00000456986 | ENST00000506325 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
Frame-shift | ENST00000456986 | ENST00000302176 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
5CDS-intron | ENST00000456986 | ENST00000507694 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
Frame-shift | ENST00000435432 | ENST00000296550 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
Frame-shift | ENST00000435432 | ENST00000506325 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
Frame-shift | ENST00000435432 | ENST00000302176 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
5CDS-intron | ENST00000435432 | ENST00000507694 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
Frame-shift | ENST00000357895 | ENST00000296550 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
Frame-shift | ENST00000357895 | ENST00000506325 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
Frame-shift | ENST00000357895 | ENST00000302176 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
5CDS-intron | ENST00000357895 | ENST00000507694 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
Frame-shift | ENST00000586263 | ENST00000296550 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
Frame-shift | ENST00000586263 | ENST00000506325 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
Frame-shift | ENST00000586263 | ENST00000302176 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
5CDS-intron | ENST00000586263 | ENST00000507694 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
Frame-shift | ENST00000456173 | ENST00000296550 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
Frame-shift | ENST00000456173 | ENST00000506325 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
Frame-shift | ENST00000456173 | ENST00000302176 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
5CDS-intron | ENST00000456173 | ENST00000507694 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
Frame-shift | ENST00000431212 | ENST00000296550 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
Frame-shift | ENST00000431212 | ENST00000506325 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
Frame-shift | ENST00000431212 | ENST00000302176 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
5CDS-intron | ENST00000431212 | ENST00000507694 | NEDD4L | chr18 | 56040501 | + | DCLK2 | chr4 | 151023630 | + |
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FusionProtFeatures for NEDD4L_DCLK2 |
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Hgene | Tgene |
NEDD4L | DCLK2 |
Protein kinase with a significantly reduced C(a2+)/CAMaffinity and dependence compared to other members of the CaMKfamily. May play a role in the down-regulation of CRE-dependentgene activation probably by phosphorylation of the CREBcoactivator CRTC2/TORC2 and the resulting retention of TORC2 inthe cytoplasm (By similarity). {ECO:0000250}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for NEDD4L_DCLK2 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for NEDD4L_DCLK2 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
NEDD4L | SFN, NR3C1, ARHGDIA, SCNN1A, SCNN1B, SCNN1G, NEDD4L, AMOT, YWHAG, YWHAZ, PSMD4, YWHAB, TNK2, OCLN, APBB1, TOLLIP, NDFIP1, KCNB1, MAPKAPK3, CLIC2, EFEMP2, HGS, NDFIP2, MAP3K3, VDAC2, ZDHHC3, CAMK1D, RANBP10, CDK5, ABL1, MAGEB1, DMTN, AICDA, MARK2, KCNAB1, FKBP3, DAPK3, BRAF, MAP3K5, DDX54, ZAK, KCNAB3, NTRK1, CUEDC1, RPS6KB2, ABL2, CACNB1, YY1, MAP3K2, BBX, PRKX, ACVR1B, ADAP2, BMPR1A, AKT3, MINK1, AURKC, NSRP1, WIBG, SGK2, UBAC1, RPL30, MERTK, SRMS, SERPINF1, DYRK3, IFRD2, SCD, ROBO3, TRIM41, TMA16, TAF1B, SPAG8, STAC, H1F0, PRR16, KIFC3, RASL10B, PRRG1, CDK3, KCNAB2, FGF12, RNF7, APEX2, MRPL19, TGFB1I1, TBC1D7, NHP2, TMEM55A, CYP26B1, DECR2, SENP2, SIVA1, RASL11B, MAP2, STK40, NUDT16L1, C7orf50, TCEAL2, ZC3HAV1L, MOB3A, TARBP2, ZADH2, WBP2, ELAVL1, YWHAH, SGK1, RAF1, TSC22D3, WNK4, WNK1, IKBKB, SMAD7, AMOTL1, UBE2D2, UBC, SMAD2, SMAD3, YWHAQ, NPC2, MT2A, ATP1B1, CYBRD1, SLC7A7, PBX1, ACY3, HAX1, KIF3B, KCNH2, CAV3, UBE2L3, UBE2K, UBE2D1, UBE2E3, UBE2J2, CDC34, ARRDC3, ARRDC4, MED28, FBXL15, LAPTM5, RNF11, KCNQ1, SGK3, UBE2D3, NOTCH1, AATF, GORAB, UBE2N, HCN1, SMAD6, SLC9A3, SNCA, WNK3, PTCH1, DAZAP2, MOV10, CCDC8, FAM189B, PRRG3, TMEM51, TMEM171, SUSD6, FAM189A2, WBP1, ARRDC1, TMEM92, TMEM52B, LDLRAD4, XPO1, LITAF, SLC22A11, SLC22A8, RHOB, CRYAB, GRB10, KCNA3, ULK1, ERBB3, PTK2B, GRIA1, ILDR1, TNFAIP3, TNFRSF19, LPAR1, EDEM3, TRIM25, SCN5A, UBE2E1, UBE2E2, UBE2L6 | DCLK2 | HSP90AA1, TSC22D3, ENO1, KRAS, DCTN1 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for NEDD4L_DCLK2 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for NEDD4L_DCLK2 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | NEDD4L | C0020538 | Hypertensive disease | 2 | CTD_human |
Hgene | NEDD4L | C0008925 | Cleft Palate | 1 | CTD_human |
Hgene | NEDD4L | C0014175 | Endometriosis | 1 | CTD_human |
Hgene | NEDD4L | C0039075 | Syndactyly | 1 | CTD_human |
Hgene | NEDD4L | C1868720 | Periventricular Nodular Heterotopia | 1 | CTD_human;ORPHANET |