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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 23874

FusionGeneSummary for NDUFC2_AAMDC

check button Fusion gene summary
Fusion gene informationFusion gene name: NDUFC2_AAMDC
Fusion gene ID: 23874
HgeneTgene
Gene symbol

NDUFC2

AAMDC

Gene ID

4718

28971

Gene nameNADH:ubiquinone oxidoreductase subunit C2adipogenesis associated Mth938 domain containing
SynonymsB14.5b|CI-B14.5b|HLC-1|NADHDH2C11orf67|CK067|PTD015
Cytomap

11q14.1

11q14.1

Type of geneprotein-codingprotein-coding
DescriptionNADH dehydrogenase [ubiquinone] 1 subunit C2NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDaNADH-ubiquinone oxidoreductase subunit B14.5bcomplex I subunit B14.5bcomplex I-B14.5bhuman lung cancer oncogene 1 proteinmth938 domain-containing proteinUPF0366 protein C11orf67adipogenesis associated Mth938 domain-containing protein
Modification date2018052720180524
UniProtAcc

O95298

Q9H7C9

Ensembl transtripts involved in fusion geneENST00000281031, ENST00000527806, 
ENST00000534029, ENST00000525085, 
ENST00000528164, 		ENST00000532481, 
ENST00000527134, ENST00000304716, 
ENST00000526415, ENST00000531855, 
ENST00000393427, ENST00000525409, 
ENST00000533193, ENST00000525034, 
Fusion gene scores* DoF score1 X 1 X 1=18 X 5 X 5=200
# samples 19
** MAII scorelog2(1/1*10)=3.32192809488736log2(9/200*10)=-1.15200309344505
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: NDUFC2 [Title/Abstract] AND AAMDC [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotationOncogene involved fusion gene, in-frame and retained their domain.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGALDSKCMTCGA-GN-A26D-06ANDUFC2chr11

77790625

-AAMDCchr11

77629107

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000281031ENST00000532481NDUFC2chr11

77790625

-AAMDCchr11

77629107

+
5CDS-intronENST00000281031ENST00000527134NDUFC2chr11

77790625

-AAMDCchr11

77629107

+
5CDS-intronENST00000281031ENST00000304716NDUFC2chr11

77790625

-AAMDCchr11

77629107

+
5CDS-intronENST00000281031ENST00000526415NDUFC2chr11

77790625

-AAMDCchr11

77629107

+
5CDS-intronENST00000281031ENST00000531855NDUFC2chr11

77790625

-AAMDCchr11

77629107

+
5CDS-intronENST00000281031ENST00000393427NDUFC2chr11

77790625

-AAMDCchr11

77629107

+
5CDS-intronENST00000281031ENST00000525409NDUFC2chr11

77790625

-AAMDCchr11

77629107

+
5CDS-intronENST00000281031ENST00000533193NDUFC2chr11

77790625

-AAMDCchr11

77629107

+
5CDS-intronENST00000281031ENST00000525034NDUFC2chr11

77790625

-AAMDCchr11

77629107

+
In-frameENST00000527806ENST00000532481NDUFC2chr11

77790625

-AAMDCchr11

77629107

+
5CDS-intronENST00000527806ENST00000527134NDUFC2chr11

77790625

-AAMDCchr11

77629107

+
5CDS-intronENST00000527806ENST00000304716NDUFC2chr11

77790625

-AAMDCchr11

77629107

+
5CDS-intronENST00000527806ENST00000526415NDUFC2chr11

77790625

-AAMDCchr11

77629107

+
5CDS-intronENST00000527806ENST00000531855NDUFC2chr11

77790625

-AAMDCchr11

77629107

+
5CDS-intronENST00000527806ENST00000393427NDUFC2chr11

77790625

-AAMDCchr11

77629107

+
5CDS-intronENST00000527806ENST00000525409NDUFC2chr11

77790625

-AAMDCchr11

77629107

+
5CDS-intronENST00000527806ENST00000533193NDUFC2chr11

77790625

-AAMDCchr11

77629107

+
5CDS-intronENST00000527806ENST00000525034NDUFC2chr11

77790625

-AAMDCchr11

77629107

+
In-frameENST00000534029ENST00000532481NDUFC2chr11

77790625

-AAMDCchr11

77629107

+
5CDS-intronENST00000534029ENST00000527134NDUFC2chr11

77790625

-AAMDCchr11

77629107

+
5CDS-intronENST00000534029ENST00000304716NDUFC2chr11

77790625

-AAMDCchr11

77629107

+
5CDS-intronENST00000534029ENST00000526415NDUFC2chr11

77790625

-AAMDCchr11

77629107

+
5CDS-intronENST00000534029ENST00000531855NDUFC2chr11

77790625

-AAMDCchr11

77629107

+
5CDS-intronENST00000534029ENST00000393427NDUFC2chr11

77790625

-AAMDCchr11

77629107

+
5CDS-intronENST00000534029ENST00000525409NDUFC2chr11

77790625

-AAMDCchr11

77629107

+
5CDS-intronENST00000534029ENST00000533193NDUFC2chr11

77790625

-AAMDCchr11

77629107

+
5CDS-intronENST00000534029ENST00000525034NDUFC2chr11

77790625

-AAMDCchr11

77629107

+
In-frameENST00000525085ENST00000532481NDUFC2chr11

77790625

-AAMDCchr11

77629107

+
5CDS-intronENST00000525085ENST00000527134NDUFC2chr11

77790625

-AAMDCchr11

77629107

+
5CDS-intronENST00000525085ENST00000304716NDUFC2chr11

77790625

-AAMDCchr11

77629107

+
5CDS-intronENST00000525085ENST00000526415NDUFC2chr11

77790625

-AAMDCchr11

77629107

+
5CDS-intronENST00000525085ENST00000531855NDUFC2chr11

77790625

-AAMDCchr11

77629107

+
5CDS-intronENST00000525085ENST00000393427NDUFC2chr11

77790625

-AAMDCchr11

77629107

+
5CDS-intronENST00000525085ENST00000525409NDUFC2chr11

77790625

-AAMDCchr11

77629107

+
5CDS-intronENST00000525085ENST00000533193NDUFC2chr11

77790625

-AAMDCchr11

77629107

+
5CDS-intronENST00000525085ENST00000525034NDUFC2chr11

77790625

-AAMDCchr11

77629107

+
In-frameENST00000528164ENST00000532481NDUFC2chr11

77790625

-AAMDCchr11

77629107

+
5CDS-intronENST00000528164ENST00000527134NDUFC2chr11

77790625

-AAMDCchr11

77629107

+
5CDS-intronENST00000528164ENST00000304716NDUFC2chr11

77790625

-AAMDCchr11

77629107

+
5CDS-intronENST00000528164ENST00000526415NDUFC2chr11

77790625

-AAMDCchr11

77629107

+
5CDS-intronENST00000528164ENST00000531855NDUFC2chr11

77790625

-AAMDCchr11

77629107

+
5CDS-intronENST00000528164ENST00000393427NDUFC2chr11

77790625

-AAMDCchr11

77629107

+
5CDS-intronENST00000528164ENST00000525409NDUFC2chr11

77790625

-AAMDCchr11

77629107

+
5CDS-intronENST00000528164ENST00000533193NDUFC2chr11

77790625

-AAMDCchr11

77629107

+
5CDS-intronENST00000528164ENST00000525034NDUFC2chr11

77790625

-AAMDCchr11

77629107

+

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FusionProtFeatures for NDUFC2_AAMDC


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
NDUFC2

O95298

AAMDC

Q9H7C9

Accessory subunit of the mitochondrial membranerespiratory chain NADH dehydrogenase (Complex I), that is believednot to be involved in catalysis. Complex I functions in thetransfer of electrons from NADH to the respiratory chain. Theimmediate electron acceptor for the enzyme is believed to beubiquinone. {ECO:0000269|PubMed:27626371}. May play a role in preadipocyte differentiation andadipogenesis. {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
>>
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
TgeneAAMDCchr11:77790625chr11:77629107ENST00000393427+046_122-39123RegionMTH138-like domain
TgeneAAMDCchr11:77790625chr11:77629107ENST00000526415+056_122-58123RegionMTH138-like domain

- In-frame and not-retained protein feature among the 13 regional features.
>>>
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneNDUFC2chr11:77790625chr11:77629107ENST00000281031-1356_7555120TransmembraneHelical
HgeneNDUFC2chr11:77790625chr11:77629107ENST00000525085-1356_755597TransmembraneHelical
HgeneNDUFC2chr11:77790625chr11:77629107ENST00000527806-1356_755589TransmembraneHelical
TgeneAAMDCchr11:77790625chr11:77629107ENST00000532481+246_1227689RegionMTH138-like domain


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FusionGeneSequence for NDUFC2_AAMDC


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.
>In-frame_NDUFC2_ENST00000281031_chr11_77790625_-_AAMDC_ENST00000532481_chr11_77629107_+_68aa

>In-frame_NDUFC2_ENST00000527806_chr11_77790625_-_AAMDC_ENST00000532481_chr11_77629107_+_68aa

>In-frame_NDUFC2_ENST00000534029_chr11_77790625_-_AAMDC_ENST00000532481_chr11_77629107_+_68aa

>In-frame_NDUFC2_ENST00000525085_chr11_77790625_-_AAMDC_ENST00000532481_chr11_77629107_+_68aa

>In-frame_NDUFC2_ENST00000528164_chr11_77790625_-_AAMDC_ENST00000532481_chr11_77629107_+_68aa


* Fusion transcript sequences (only coding sequence (CDS) region).
>In-frame_NDUFC2_ENST00000281031_chr11_77790625_-_AAMDC_ENST00000532481_chr11_77629107_+_205nt
ATGATCGCACGGCGGAACCCAGAACCCTTACGGTTTCTGCCGGATGAGGCCCGGAGCCTGCCCCCGCCCAAGCTGACCGACCCGCGGCTC
CTCTACATCGGCTTCTTGGGCTACTGCTCCGGCCTGATTGATAACCTAATCCGGCGGAGGCCGATCGCGACGGCTGGATGGAATACAGGG

>In-frame_NDUFC2_ENST00000527806_chr11_77790625_-_AAMDC_ENST00000532481_chr11_77629107_+_205nt
ATGATCGCACGGCGGAACCCAGAACCCTTACGGTTTCTGCCGGATGAGGCCCGGAGCCTGCCCCCGCCCAAGCTGACCGACCCGCGGCTC
CTCTACATCGGCTTCTTGGGCTACTGCTCCGGCCTGATTGATAACCTAATCCGGCGGAGGCCGATCGCGACGGCTGGATGGAATACAGGG

>In-frame_NDUFC2_ENST00000534029_chr11_77790625_-_AAMDC_ENST00000532481_chr11_77629107_+_205nt
ATGATCGCACGGCGGAACCCAGAACCCTTACGGTTTCTGCCGGATGAGGCCCGGAGCCTGCCCCCGCCCAAGCTGACCGACCCGCGGCTC
CTCTACATCGGCTTCTTGGGCTACTGCTCCGGCCTGATTGATAACCTAATCCGGCGGAGGCCGATCGCGACGGCTGGATGGAATACAGGG

>In-frame_NDUFC2_ENST00000525085_chr11_77790625_-_AAMDC_ENST00000532481_chr11_77629107_+_205nt
ATGATCGCACGGCGGAACCCAGAACCCTTACGGTTTCTGCCGGATGAGGCCCGGAGCCTGCCCCCGCCCAAGCTGACCGACCCGCGGCTC
CTCTACATCGGCTTCTTGGGCTACTGCTCCGGCCTGATTGATAACCTAATCCGGCGGAGGCCGATCGCGACGGCTGGATGGAATACAGGG

>In-frame_NDUFC2_ENST00000528164_chr11_77790625_-_AAMDC_ENST00000532481_chr11_77629107_+_205nt
ATGATCGCACGGCGGAACCCAGAACCCTTACGGTTTCTGCCGGATGAGGCCCGGAGCCTGCCCCCGCCCAAGCTGACCGACCCGCGGCTC
CTCTACATCGGCTTCTTGGGCTACTGCTCCGGCCTGATTGATAACCTAATCCGGCGGAGGCCGATCGCGACGGCTGGATGGAATACAGGG


* Fusion transcript sequences (Full-length transcript).
>In-frame_NDUFC2_ENST00000281031_chr11_77790625_-_AAMDC_ENST00000532481_chr11_77629107_+_1013nt
TAGCTTTTATGGAATTTCAATTAATTACGTTTATCAAAACTACGCATCATGCCCATTTGTGGGTATTGGATGAAAAGATAAATCTTTCCA
GAAGGGGCAGGGGAGGGAGAGGCAATTCTGGTTGGGGAAGTTGGGAGAAAAGAAAATCAGTATCTCCTAGTCTTCGCCCAGTTTGGCTCG
TTTGGGGTACTCCTCGACCCCGCGTTACCAGGCCCGTGAATCCCACTCCCACCAGAGAATTAGCGCGGGCGGACGAGCAAAGTGAAACTT
AGTAGCCCGGAACTTCGCGTGCCGGGTTCCCGCAGCAACACGTACCGGGAAGCGTTTGGGCGCTGCACCGCGCTGCGCCGTGCCCGTGAG
TCCGGCGCGCAGAGGAGGAGGAGAAAGCTGACCGCTTAGGCCGGGGTAGTGGTCGTCGTGGTTTTCCTTGTAGTTCGTGGTCTGAGACCA
GGCCTCAAGTGGAAACGGCGTCACCATGATCGCACGGCGGAACCCAGAACCCTTACGGTTTCTGCCGGATGAGGCCCGGAGCCTGCCCCC
GCCCAAGCTGACCGACCCGCGGCTCCTCTACATCGGCTTCTTGGGCTACTGCTCCGGCCTGATTGATAACCTAATCCGGCGGAGGCCGAT
CGCGACGGCTGGATGGAATACAGGGGGCACAGTTAGATCTGAATTGTTAAGCAGAGGCTGCTTGATGCAGAAGATGAAGACAGAAGAAAG
AATGAGCCTAGGCCGGGCACAGTGGCTCACGCCTGTAATTCCAGCACTTTGGGAGGCCGAGGCGGGAGGATCACTTGAGCTCAGGAGTTT
GAGACCAGCCTGGCCACCATGGTGAAACCTCGACTCTACAAAAAAAAAAAAGCCAAAATTAGCCAGGTGTGGTGGCATATGCCTGTGGTC
CCAGCTACTTGGGAGGCTGAAGTGGGAGAATCACTTGCAGTGAGCTGATATTATGCCACTGCACTCCAGCCTGGGTGACAGGGTGAGACC

>In-frame_NDUFC2_ENST00000527806_chr11_77790625_-_AAMDC_ENST00000532481_chr11_77629107_+_635nt
AGGAGAAAGCTGACCGCTTAGGCCGGGGTAGTGGTCGTCGTGGTTTTCCTTGTAGTTCGTGGTCTGAGACCAGGCCTCAAGTGGAAACGG
CGTCACCATGATCGCACGGCGGAACCCAGAACCCTTACGGTTTCTGCCGGATGAGGCCCGGAGCCTGCCCCCGCCCAAGCTGACCGACCC
GCGGCTCCTCTACATCGGCTTCTTGGGCTACTGCTCCGGCCTGATTGATAACCTAATCCGGCGGAGGCCGATCGCGACGGCTGGATGGAA
TACAGGGGGCACAGTTAGATCTGAATTGTTAAGCAGAGGCTGCTTGATGCAGAAGATGAAGACAGAAGAAAGAATGAGCCTAGGCCGGGC
ACAGTGGCTCACGCCTGTAATTCCAGCACTTTGGGAGGCCGAGGCGGGAGGATCACTTGAGCTCAGGAGTTTGAGACCAGCCTGGCCACC
ATGGTGAAACCTCGACTCTACAAAAAAAAAAAAGCCAAAATTAGCCAGGTGTGGTGGCATATGCCTGTGGTCCCAGCTACTTGGGAGGCT
GAAGTGGGAGAATCACTTGCAGTGAGCTGATATTATGCCACTGCACTCCAGCCTGGGTGACAGGGTGAGACCCTGTCTCAAAAAAAAAAA

>In-frame_NDUFC2_ENST00000534029_chr11_77790625_-_AAMDC_ENST00000532481_chr11_77629107_+_613nt
CCGGGGTAGTGGTCGTCGTGGTTTTCCTTGTAGTTCGTGGTCTGAGACCAGGCCTCAAGTGGAAACGGCGTCACCATGATCGCACGGCGG
AACCCAGAACCCTTACGGTTTCTGCCGGATGAGGCCCGGAGCCTGCCCCCGCCCAAGCTGACCGACCCGCGGCTCCTCTACATCGGCTTC
TTGGGCTACTGCTCCGGCCTGATTGATAACCTAATCCGGCGGAGGCCGATCGCGACGGCTGGATGGAATACAGGGGGCACAGTTAGATCT
GAATTGTTAAGCAGAGGCTGCTTGATGCAGAAGATGAAGACAGAAGAAAGAATGAGCCTAGGCCGGGCACAGTGGCTCACGCCTGTAATT
CCAGCACTTTGGGAGGCCGAGGCGGGAGGATCACTTGAGCTCAGGAGTTTGAGACCAGCCTGGCCACCATGGTGAAACCTCGACTCTACA
AAAAAAAAAAAGCCAAAATTAGCCAGGTGTGGTGGCATATGCCTGTGGTCCCAGCTACTTGGGAGGCTGAAGTGGGAGAATCACTTGCAG

>In-frame_NDUFC2_ENST00000525085_chr11_77790625_-_AAMDC_ENST00000532481_chr11_77629107_+_613nt
CCGGGGTAGTGGTCGTCGTGGTTTTCCTTGTAGTTCGTGGTCTGAGACCAGGCCTCAAGTGGAAACGGCGTCACCATGATCGCACGGCGG
AACCCAGAACCCTTACGGTTTCTGCCGGATGAGGCCCGGAGCCTGCCCCCGCCCAAGCTGACCGACCCGCGGCTCCTCTACATCGGCTTC
TTGGGCTACTGCTCCGGCCTGATTGATAACCTAATCCGGCGGAGGCCGATCGCGACGGCTGGATGGAATACAGGGGGCACAGTTAGATCT
GAATTGTTAAGCAGAGGCTGCTTGATGCAGAAGATGAAGACAGAAGAAAGAATGAGCCTAGGCCGGGCACAGTGGCTCACGCCTGTAATT
CCAGCACTTTGGGAGGCCGAGGCGGGAGGATCACTTGAGCTCAGGAGTTTGAGACCAGCCTGGCCACCATGGTGAAACCTCGACTCTACA
AAAAAAAAAAAGCCAAAATTAGCCAGGTGTGGTGGCATATGCCTGTGGTCCCAGCTACTTGGGAGGCTGAAGTGGGAGAATCACTTGCAG

>In-frame_NDUFC2_ENST00000528164_chr11_77790625_-_AAMDC_ENST00000532481_chr11_77629107_+_655nt
AGTCCGGCGCGCAGAGGAGGAGGAGAAAGCTGACCGCTTAGGCCGGGGTAGTGGTCGTCGTGGTTTTCCTTGTAGTTCGTGGTCTGAGAC
CAGGCCTCAAGTGGAAACGGCGTCACCATGATCGCACGGCGGAACCCAGAACCCTTACGGTTTCTGCCGGATGAGGCCCGGAGCCTGCCC
CCGCCCAAGCTGACCGACCCGCGGCTCCTCTACATCGGCTTCTTGGGCTACTGCTCCGGCCTGATTGATAACCTAATCCGGCGGAGGCCG
ATCGCGACGGCTGGATGGAATACAGGGGGCACAGTTAGATCTGAATTGTTAAGCAGAGGCTGCTTGATGCAGAAGATGAAGACAGAAGAA
AGAATGAGCCTAGGCCGGGCACAGTGGCTCACGCCTGTAATTCCAGCACTTTGGGAGGCCGAGGCGGGAGGATCACTTGAGCTCAGGAGT
TTGAGACCAGCCTGGCCACCATGGTGAAACCTCGACTCTACAAAAAAAAAAAAGCCAAAATTAGCCAGGTGTGGTGGCATATGCCTGTGG
TCCCAGCTACTTGGGAGGCTGAAGTGGGAGAATCACTTGCAGTGAGCTGATATTATGCCACTGCACTCCAGCCTGGGTGACAGGGTGAGA


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FusionGenePPI for NDUFC2_AAMDC


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
NDUFC2ELAVL1, TIMMDC1, ECSIT, WBP1, TMEM126B, NDUFA8, NDUFA13, COX6B1, CISD3, NDUFB11, NDUFS6, SPPL2B, ACAD9, NDUFS7, NDUFB5, YIPF3, IMPDH1, TACR1, LPAR6, CSGALNACT2AAMDCAPP, BAG3, GORASP2, ACY3, EGFR


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for NDUFC2_AAMDC


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status
HgeneNDUFC2O95298DB01136CarvedilolNADH dehydrogenase [ubiquinone] 1 subunit C2small moleculeapproved|investigational

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RelatedDiseases for NDUFC2_AAMDC


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource