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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 23717

FusionGeneSummary for NCOR1_HIC1

check button Fusion gene summary
Fusion gene informationFusion gene name: NCOR1_HIC1
Fusion gene ID: 23717
HgeneTgene
Gene symbol

NCOR1

HIC1

Gene ID

9611

3090

Gene namenuclear receptor corepressor 1HIC ZBTB transcriptional repressor 1
SynonymsN-CoR|N-CoR1|PPP1R109|TRAC1|hN-CoRZBTB29|ZNF901|hic-1
Cytomap

17p12-p11.2

17p13.3

Type of geneprotein-codingprotein-coding
Descriptionnuclear receptor corepressor 1protein phosphatase 1, regulatory subunit 109thyroid hormone- and retinoic acid receptor-associated corepressor 1hypermethylated in cancer 1 proteinhypermethylated in cancer 1zinc finger and BTB domain-containing protein 29
Modification date2018052320180523
UniProtAcc

O75376

Q14526

Ensembl transtripts involved in fusion geneENST00000268712, ENST00000395851, 
ENST00000395857, ENST00000395848, 
ENST00000583226, 
ENST00000399849, 
ENST00000322941, 
Fusion gene scores* DoF score18 X 14 X 10=25201 X 1 X 1=1
# samples 161
** MAII scorelog2(16/2520*10)=-3.97727992349992
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(1/1*10)=3.32192809488736
Context

PubMed: NCOR1 [Title/Abstract] AND HIC1 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneNCOR1

GO:0046329

negative regulation of JNK cascade

11931768

TgeneHIC1

GO:0000122

negative regulation of transcription by RNA polymerase II

12052894|15231840

TgeneHIC1

GO:0008630

intrinsic apoptotic signaling pathway in response to DNA damage

16269335

TgeneHIC1

GO:0030178

negative regulation of Wnt signaling pathway

16724116


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGARVCHOLTCGA-W5-AA31-01ANCOR1chr17

15973479

-HIC1chr17

1959965

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-5UTRENST00000268712ENST00000399849NCOR1chr17

15973479

-HIC1chr17

1959965

+
5CDS-5UTRENST00000268712ENST00000322941NCOR1chr17

15973479

-HIC1chr17

1959965

+
5CDS-5UTRENST00000395851ENST00000399849NCOR1chr17

15973479

-HIC1chr17

1959965

+
5CDS-5UTRENST00000395851ENST00000322941NCOR1chr17

15973479

-HIC1chr17

1959965

+
5CDS-5UTRENST00000395857ENST00000399849NCOR1chr17

15973479

-HIC1chr17

1959965

+
5CDS-5UTRENST00000395857ENST00000322941NCOR1chr17

15973479

-HIC1chr17

1959965

+
intron-5UTRENST00000395848ENST00000399849NCOR1chr17

15973479

-HIC1chr17

1959965

+
intron-5UTRENST00000395848ENST00000322941NCOR1chr17

15973479

-HIC1chr17

1959965

+
intron-5UTRENST00000583226ENST00000399849NCOR1chr17

15973479

-HIC1chr17

1959965

+
intron-5UTRENST00000583226ENST00000322941NCOR1chr17

15973479

-HIC1chr17

1959965

+

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FusionProtFeatures for NCOR1_HIC1


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
NCOR1

O75376

HIC1

Q14526

Mediates transcriptional repression by certain nuclearreceptors. Part of a complex which promotes histone deacetylationand the formation of repressive chromatin structures which mayimpede the access of basal transcription factors. Participates inthe transcriptional repressor activity produced by BCL6.{ECO:0000269|PubMed:14527417}. Transcriptional repressor. Recognizes and binds to theconsensus sequence '5-[CG]NG[CG]GGGCA[CA]CC-3'. May act as a tumorsuppressor. May be involved in development of head, face, limbsand ventral body wall. Involved in down-regulation of SIRT1 andthereby is involved in regulation of p53/TP53-dependent apoptoticDNA-damage responses. The specific target gene promoterassociation seems to be depend on corepressors, such as CTBP1 orCTBP2 and MTA1. The regulation of SIRT1 transcription in responseto nutrient deprivation seems to involve CTBP1. In cooperationwith MTA1 (indicative for an association with the NuRD complex)represses transcription from CCND1/cyclin-D1 and CDKN1C/p57Kip2specifically in quiescent cells. Involved in regulation of the Wntsignaling pathway probably by association with TCF7L2 andpreventing TCF7L2 and CTNNB1 association with promoters of TCF-responsive genes. Seems to repress transcription from E2F1 andATOH1 which involves ARID1A, indicative for the participation of adistinct SWI/SNF-type chromatin-remodeling complex. Probablyrepresses transcription from ACKR3, FGFBP1 and EFNA1.{ECO:0000269|PubMed:12052894, ECO:0000269|PubMed:15231840,ECO:0000269|PubMed:16269335, ECO:0000269|PubMed:16690027,ECO:0000269|PubMed:16724116, ECO:0000269|PubMed:17213307,ECO:0000269|PubMed:18347096, ECO:0000269|PubMed:19486893,ECO:0000269|PubMed:19525223, ECO:0000269|PubMed:20154726,ECO:0000269|PubMed:20547755}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for NCOR1_HIC1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for NCOR1_HIC1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
NCOR1NELFE, AR, KDM4A, HSPA4, CORO2A, HDAC3, GPS2, TBL1XR1, KIF11, ZBTB33, TRIM33, CHD1, CLK1, PTMA, TBL1X, HDAC9, TAB2, NFKB1, HDAC4, HDAC7, HDAC5, PML, SIN3A, SKI, PHB, PPARD, BCL6, NCOR2, SMARCB1, SMARCA4, SAP30, SRCAP, SMARCC2, SMARCC1, SF3B3, SF3A1, TRIM28, CBFA2T3, RUNX1T1, NCOA1, NR3C1, PDCD2, ZMYND11, MYOD1, TXNRD2, PPARA, RARG, RARA, ZBTB16, HEY2, HTT, NR1D1, NR1D2, MECP2, VDR, ESR1, DZIP3, THRA, KDM5C, REST, ZBTB7A, THRB, PGR, DACH1, BACH1, TP53, ATXN3, CREBBP, EP300, NR1I2, NR1H4, SIRT1, PRAM1, CNOT2, PIAS1, UBE2I, CBFA2T2, SPEN, HIST1H3A, SAFB, SAFB2, NR1H3, NR1H2, PPP1CA, PPP1CB, PPP1CC, PPARG, ATXN1L, NCOA3, POU1F1, SP1, CEBPB, NFE2L2, HIST1H4A, ETS1, ETS2, THAP7, NFKBIA, ETV6, RUNX1, COPS2, RXRA, SKIL, HESX1, SNW1, TAF9, GTF2B, TAF6, MYB, BAZ1A, EMD, IRF5, CDKN1A, SOX2, KDM5B, NRD1, ERBB4, ATXN1, RBBP4, SMARCA2, SMARCE1, HMGXB4, BPTF, SMARCD1, CHUK, YWHAZ, C1D, CXADR, CSNK2A1, SMAD4, SQSTM1, JUN, CREB1, PHB2, RFPL4B, QPRT, KLF5, MYC, EWSR1, FGFR1OP, NINL, KIF5B, KPNA1, RAB5A, KIF18A, SGOL1, EXOSC1, FOXK1, FOXK2, TEAD4, FBXW7, ITGAV, EYA2, TBL1Y, HNRNPLL, C6orf141, CDC16, IL17RA, ZSCAN5A, NCAPH2, OLFM2, USP44, TRIM25HIC1HIC1, CTBP1, CTBP2, ARID1A, UBE2I, SENP3, PIAS1, PIAS2, SIRT1, HDAC4, MTA1, MBD3, CHD3, RBBP4, PHF19, PHF1, EZH2, SUZ12, EED, HIC2, STAT3, PIAS4, PIAS3, SP1, TCF7L2, MECOM, TRIM25


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for NCOR1_HIC1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for NCOR1_HIC1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneNCOR1C0005695Bladder Neoplasm1CTD_human
HgeneNCOR1C0007138Carcinoma, Transitional Cell1CTD_human
HgeneNCOR1C0014175Endometriosis1CTD_human
HgeneNCOR1C0017636Glioblastoma1CTD_human
HgeneNCOR1C0023903Liver neoplasms1CTD_human
HgeneNCOR1C1458155Mammary Neoplasms1CTD_human
TgeneHIC1C0017185Gastrointestinal Neoplasms1CTD_human
TgeneHIC1C0025149Medulloblastoma1CTD_human
TgeneHIC1C0032584polyps1CTD_human
TgeneHIC1C1458155Mammary Neoplasms1CTD_human