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Fusion gene ID: 23714 |
FusionGeneSummary for NCOR1_CDRT4 |
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Fusion gene information | Fusion gene name: NCOR1_CDRT4 | Fusion gene ID: 23714 | Hgene | Tgene | Gene symbol | NCOR1 | CDRT4 | Gene ID | 9611 | 284040 |
Gene name | nuclear receptor corepressor 1 | CMT1A duplicated region transcript 4 | |
Synonyms | N-CoR|N-CoR1|PPP1R109|TRAC1|hN-CoR | - | |
Cytomap | 17p12-p11.2 | 17p12 | |
Type of gene | protein-coding | protein-coding | |
Description | nuclear receptor corepressor 1protein phosphatase 1, regulatory subunit 109thyroid hormone- and retinoic acid receptor-associated corepressor 1 | CMT1A duplicated region transcript 4 protein | |
Modification date | 20180523 | 20180519 | |
UniProtAcc | O75376 | Q8N9R6 | |
Ensembl transtripts involved in fusion gene | ENST00000268712, ENST00000395851, ENST00000395857, ENST00000395848, ENST00000583226, | ENST00000312177, ENST00000519354, | |
Fusion gene scores | * DoF score | 18 X 14 X 10=2520 | 3 X 2 X 3=18 |
# samples | 16 | 3 | |
** MAII score | log2(16/2520*10)=-3.97727992349992 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(3/18*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: NCOR1 [Title/Abstract] AND CDRT4 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | NCOR1 | GO:0046329 | negative regulation of JNK cascade | 11931768 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | BLCA | TCGA-E5-A2PC-01A | NCOR1 | chr17 | 15989596 | - | CDRT4 | chr17 | 15343599 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-5UTR | ENST00000268712 | ENST00000312177 | NCOR1 | chr17 | 15989596 | - | CDRT4 | chr17 | 15343599 | - |
5CDS-intron | ENST00000268712 | ENST00000519354 | NCOR1 | chr17 | 15989596 | - | CDRT4 | chr17 | 15343599 | - |
5CDS-5UTR | ENST00000395851 | ENST00000312177 | NCOR1 | chr17 | 15989596 | - | CDRT4 | chr17 | 15343599 | - |
5CDS-intron | ENST00000395851 | ENST00000519354 | NCOR1 | chr17 | 15989596 | - | CDRT4 | chr17 | 15343599 | - |
intron-5UTR | ENST00000395857 | ENST00000312177 | NCOR1 | chr17 | 15989596 | - | CDRT4 | chr17 | 15343599 | - |
intron-intron | ENST00000395857 | ENST00000519354 | NCOR1 | chr17 | 15989596 | - | CDRT4 | chr17 | 15343599 | - |
intron-5UTR | ENST00000395848 | ENST00000312177 | NCOR1 | chr17 | 15989596 | - | CDRT4 | chr17 | 15343599 | - |
intron-intron | ENST00000395848 | ENST00000519354 | NCOR1 | chr17 | 15989596 | - | CDRT4 | chr17 | 15343599 | - |
intron-5UTR | ENST00000583226 | ENST00000312177 | NCOR1 | chr17 | 15989596 | - | CDRT4 | chr17 | 15343599 | - |
intron-intron | ENST00000583226 | ENST00000519354 | NCOR1 | chr17 | 15989596 | - | CDRT4 | chr17 | 15343599 | - |
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FusionProtFeatures for NCOR1_CDRT4 |
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Hgene | Tgene |
NCOR1 | CDRT4 |
Mediates transcriptional repression by certain nuclearreceptors. Part of a complex which promotes histone deacetylationand the formation of repressive chromatin structures which mayimpede the access of basal transcription factors. Participates inthe transcriptional repressor activity produced by BCL6.{ECO:0000269|PubMed:14527417}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for NCOR1_CDRT4 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for NCOR1_CDRT4 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
NCOR1 | NELFE, AR, KDM4A, HSPA4, CORO2A, HDAC3, GPS2, TBL1XR1, KIF11, ZBTB33, TRIM33, CHD1, CLK1, PTMA, TBL1X, HDAC9, TAB2, NFKB1, HDAC4, HDAC7, HDAC5, PML, SIN3A, SKI, PHB, PPARD, BCL6, NCOR2, SMARCB1, SMARCA4, SAP30, SRCAP, SMARCC2, SMARCC1, SF3B3, SF3A1, TRIM28, CBFA2T3, RUNX1T1, NCOA1, NR3C1, PDCD2, ZMYND11, MYOD1, TXNRD2, PPARA, RARG, RARA, ZBTB16, HEY2, HTT, NR1D1, NR1D2, MECP2, VDR, ESR1, DZIP3, THRA, KDM5C, REST, ZBTB7A, THRB, PGR, DACH1, BACH1, TP53, ATXN3, CREBBP, EP300, NR1I2, NR1H4, SIRT1, PRAM1, CNOT2, PIAS1, UBE2I, CBFA2T2, SPEN, HIST1H3A, SAFB, SAFB2, NR1H3, NR1H2, PPP1CA, PPP1CB, PPP1CC, PPARG, ATXN1L, NCOA3, POU1F1, SP1, CEBPB, NFE2L2, HIST1H4A, ETS1, ETS2, THAP7, NFKBIA, ETV6, RUNX1, COPS2, RXRA, SKIL, HESX1, SNW1, TAF9, GTF2B, TAF6, MYB, BAZ1A, EMD, IRF5, CDKN1A, SOX2, KDM5B, NRD1, ERBB4, ATXN1, RBBP4, SMARCA2, SMARCE1, HMGXB4, BPTF, SMARCD1, CHUK, YWHAZ, C1D, CXADR, CSNK2A1, SMAD4, SQSTM1, JUN, CREB1, PHB2, RFPL4B, QPRT, KLF5, MYC, EWSR1, FGFR1OP, NINL, KIF5B, KPNA1, RAB5A, KIF18A, SGOL1, EXOSC1, FOXK1, FOXK2, TEAD4, FBXW7, ITGAV, EYA2, TBL1Y, HNRNPLL, C6orf141, CDC16, IL17RA, ZSCAN5A, NCAPH2, OLFM2, USP44, TRIM25 | CDRT4 | VAC14, SORT1 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for NCOR1_CDRT4 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for NCOR1_CDRT4 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | NCOR1 | C0005695 | Bladder Neoplasm | 1 | CTD_human |
Hgene | NCOR1 | C0007138 | Carcinoma, Transitional Cell | 1 | CTD_human |
Hgene | NCOR1 | C0014175 | Endometriosis | 1 | CTD_human |
Hgene | NCOR1 | C0017636 | Glioblastoma | 1 | CTD_human |
Hgene | NCOR1 | C0023903 | Liver neoplasms | 1 | CTD_human |
Hgene | NCOR1 | C1458155 | Mammary Neoplasms | 1 | CTD_human |