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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 23684

FusionGeneSummary for NCOA4_ARHGAP44

check button Fusion gene summary
Fusion gene informationFusion gene name: NCOA4_ARHGAP44
Fusion gene ID: 23684
HgeneTgene
Gene symbol

NCOA4

ARHGAP44

Gene ID

8031

9912

Gene namenuclear receptor coactivator 4Rho GTPase activating protein 44
SynonymsARA70|ELE1|PTC3|RFGNPC-A-10|RICH2
Cytomap

10q11.22

17p12

Type of geneprotein-codingprotein-coding
Descriptionnuclear receptor coactivator 470 kDa AR-activator70 kDa androgen receptor coactivatorNCoA-4RET-activating gene ELE1androgen receptor-associated protein of 70 kDaret fusedrho GTPase-activating protein 44Rho-type GTPase-activating protein RICH2RhoGAP interacting with CIP4 homologs protein 2rho GTPase-activating protein RICH2
Modification date2018051920180523
UniProtAcc

Q13772

Q17R89

Ensembl transtripts involved in fusion geneENST00000438493, ENST00000452682, 
ENST00000498586, ENST00000430396, 
ENST00000374087, ENST00000414907, 
ENST00000344348, ENST00000374082, 
ENST00000443446, 		ENST00000379672, 
ENST00000340825, ENST00000262444, 
ENST00000578087, 
Fusion gene scores* DoF score8 X 4 X 7=2244 X 4 X 4=64
# samples 125
** MAII scorelog2(12/224*10)=-0.900464326449086
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(5/64*10)=-0.356143810225275
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: NCOA4 [Title/Abstract] AND ARHGAP44 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneNCOA4

GO:0006622

protein targeting to lysosome

25327288


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGALDPRADTCGA-V1-A8ML-01ANCOA4chr10

51565296

-ARHGAP44chr17

12862034

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5UTR-3CDSENST00000438493ENST00000379672NCOA4chr10

51565296

-ARHGAP44chr17

12862034

+
5UTR-3CDSENST00000438493ENST00000340825NCOA4chr10

51565296

-ARHGAP44chr17

12862034

+
5UTR-3CDSENST00000438493ENST00000262444NCOA4chr10

51565296

-ARHGAP44chr17

12862034

+
5UTR-intronENST00000438493ENST00000578087NCOA4chr10

51565296

-ARHGAP44chr17

12862034

+
5UTR-3CDSENST00000452682ENST00000379672NCOA4chr10

51565296

-ARHGAP44chr17

12862034

+
5UTR-3CDSENST00000452682ENST00000340825NCOA4chr10

51565296

-ARHGAP44chr17

12862034

+
5UTR-3CDSENST00000452682ENST00000262444NCOA4chr10

51565296

-ARHGAP44chr17

12862034

+
5UTR-intronENST00000452682ENST00000578087NCOA4chr10

51565296

-ARHGAP44chr17

12862034

+
3UTR-3CDSENST00000498586ENST00000379672NCOA4chr10

51565296

-ARHGAP44chr17

12862034

+
3UTR-3CDSENST00000498586ENST00000340825NCOA4chr10

51565296

-ARHGAP44chr17

12862034

+
3UTR-3CDSENST00000498586ENST00000262444NCOA4chr10

51565296

-ARHGAP44chr17

12862034

+
3UTR-intronENST00000498586ENST00000578087NCOA4chr10

51565296

-ARHGAP44chr17

12862034

+
5UTR-3CDSENST00000430396ENST00000379672NCOA4chr10

51565296

-ARHGAP44chr17

12862034

+
5UTR-3CDSENST00000430396ENST00000340825NCOA4chr10

51565296

-ARHGAP44chr17

12862034

+
5UTR-3CDSENST00000430396ENST00000262444NCOA4chr10

51565296

-ARHGAP44chr17

12862034

+
5UTR-intronENST00000430396ENST00000578087NCOA4chr10

51565296

-ARHGAP44chr17

12862034

+
5UTR-3CDSENST00000374087ENST00000379672NCOA4chr10

51565296

-ARHGAP44chr17

12862034

+
5UTR-3CDSENST00000374087ENST00000340825NCOA4chr10

51565296

-ARHGAP44chr17

12862034

+
5UTR-3CDSENST00000374087ENST00000262444NCOA4chr10

51565296

-ARHGAP44chr17

12862034

+
5UTR-intronENST00000374087ENST00000578087NCOA4chr10

51565296

-ARHGAP44chr17

12862034

+
5UTR-3CDSENST00000414907ENST00000379672NCOA4chr10

51565296

-ARHGAP44chr17

12862034

+
5UTR-3CDSENST00000414907ENST00000340825NCOA4chr10

51565296

-ARHGAP44chr17

12862034

+
5UTR-3CDSENST00000414907ENST00000262444NCOA4chr10

51565296

-ARHGAP44chr17

12862034

+
5UTR-intronENST00000414907ENST00000578087NCOA4chr10

51565296

-ARHGAP44chr17

12862034

+
intron-3CDSENST00000344348ENST00000379672NCOA4chr10

51565296

-ARHGAP44chr17

12862034

+
intron-3CDSENST00000344348ENST00000340825NCOA4chr10

51565296

-ARHGAP44chr17

12862034

+
intron-3CDSENST00000344348ENST00000262444NCOA4chr10

51565296

-ARHGAP44chr17

12862034

+
intron-intronENST00000344348ENST00000578087NCOA4chr10

51565296

-ARHGAP44chr17

12862034

+
intron-3CDSENST00000374082ENST00000379672NCOA4chr10

51565296

-ARHGAP44chr17

12862034

+
intron-3CDSENST00000374082ENST00000340825NCOA4chr10

51565296

-ARHGAP44chr17

12862034

+
intron-3CDSENST00000374082ENST00000262444NCOA4chr10

51565296

-ARHGAP44chr17

12862034

+
intron-intronENST00000374082ENST00000578087NCOA4chr10

51565296

-ARHGAP44chr17

12862034

+
intron-3CDSENST00000443446ENST00000379672NCOA4chr10

51565296

-ARHGAP44chr17

12862034

+
intron-3CDSENST00000443446ENST00000340825NCOA4chr10

51565296

-ARHGAP44chr17

12862034

+
intron-3CDSENST00000443446ENST00000262444NCOA4chr10

51565296

-ARHGAP44chr17

12862034

+
intron-intronENST00000443446ENST00000578087NCOA4chr10

51565296

-ARHGAP44chr17

12862034

+

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FusionProtFeatures for NCOA4_ARHGAP44


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
NCOA4

Q13772

ARHGAP44

Q17R89

Enhances the androgen receptor transcriptional activityin prostate cancer cells. Ligand-independent coactivator of theperoxisome proliferator-activated receptor (PPAR) gamma.{ECO:0000269|PubMed:10347167}. GTPase-activating protein (GAP) that stimulates theGTPase activity of Rho-type GTPases. Thereby, controls Rho-typeGTPases cycling between their active GTP-bound and inactive GDP-bound states. May act as a GAP for CDC42 and RAC1. Endosomalrecycling protein which, in association with SHANK3, is involvedin synaptic plasticity. Promotes GRIA1 exocytosis from recyclingendosomes and spine morphological changes associated to long-termpotentiation. {ECO:0000269|PubMed:11431473}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for NCOA4_ARHGAP44


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for NCOA4_ARHGAP44


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
NCOA4AR, PPARG, ESR1, GTF2B, KAT2B, NR3C1, VDR, AKT1, ATXN2, RXRA, HERC2, XPO1, GRIA2, KDR, KIFC3, PSMC1, XRCC3, HUWE1, PSMD14, TFG, KIF21A, USP43, FTH1, FTL, GMCL1, NEURL4ARHGAP44HN1, CDC42, RAC1, TRIP10, TIPRL, ARHGAP17, FNBP1L, SH3BP1, SH3KBP1, CD2AP, CASP5, PPP3CC, WDTC1, VPS26A, SLC9A3R2


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for NCOA4_ARHGAP44


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for NCOA4_ARHGAP44


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneNCOA4C0040136Thyroid Neoplasm1CTD_human