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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 23661

FusionGeneSummary for NCOA2_RHOB

check button Fusion gene summary
Fusion gene informationFusion gene name: NCOA2_RHOB
Fusion gene ID: 23661
HgeneTgene
Gene symbol

NCOA2

RHOB

Gene ID

10499

388

Gene namenuclear receptor coactivator 2ras homolog family member B
SynonymsGRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75ARH6|ARHB|MST081|MSTP081|RHOH6
Cytomap

8q13.3

2p24.1

Type of geneprotein-codingprotein-coding
Descriptionnuclear receptor coactivator 2class E basic helix-loop-helix protein 75glucocorticoid receptor-interacting protein-1p160 steroid receptor coactivator 2transcriptional intermediary factor 2rho-related GTP-binding protein RhoBAplysia RAS-related homolog 6h6oncogene RHO H6ras homolog gene family, member Brho cDNA clone 6
Modification date2018052320180523
UniProtAcc

Q15596

P62745

Ensembl transtripts involved in fusion geneENST00000452400, ENST00000267974, 
ENST00000524223, 
ENST00000272233, 
Fusion gene scores* DoF score19 X 13 X 8=19762 X 2 X 1=4
# samples 212
** MAII scorelog2(21/1976*10)=-3.23412171391855
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(2/4*10)=2.32192809488736
Context

PubMed: NCOA2 [Title/Abstract] AND RHOB [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgeneRHOB

GO:0008333

endosome to lysosome transport

10508588

TgeneRHOB

GO:0030336

negative regulation of cell migration

20460403

TgeneRHOB

GO:0070301

cellular response to hydrogen peroxide

21373644

TgeneRHOB

GO:0071479

cellular response to ionizing radiation

21373644


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS3.1BF088409NCOA2chr8

71246573

+RHOBchr2

20648927

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
intron-3UTRENST00000452400ENST00000272233NCOA2chr8

71246573

+RHOBchr2

20648927

-
intron-3UTRENST00000267974ENST00000272233NCOA2chr8

71246573

+RHOBchr2

20648927

-
intron-3UTRENST00000524223ENST00000272233NCOA2chr8

71246573

+RHOBchr2

20648927

-

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FusionProtFeatures for NCOA2_RHOB


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
NCOA2

Q15596

RHOB

P62745

Transcriptional coactivator for steroid receptors andnuclear receptors. Coactivator of the steroid binding domain (AF-2) but not of the modulating N-terminal domain (AF-1). Requiredwith NCOA1 to control energy balance between white and brownadipose tissues. Critical regulator of glucose metabolismregulation, acts as RORA coactivator to specifically modulate G6PCexpression. Involved in the positive regulation of thetranscriptional activity of the glucocorticoid receptor NR3C1 bysumoylation enhancer RWDD3. Positively regulates the circadianclock by acting as a transcriptional coactivator for the CLOCK-ARNTL/BMAL1 heterodimer (By similarity).{ECO:0000250|UniProtKB:Q61026, ECO:0000269|PubMed:23508108,ECO:0000269|PubMed:9430642}. Mediates apoptosis in neoplastically transformed cellsafter DNA damage. Not essential for development but affects celladhesion and growth factor signaling in transformed cells. Plays anegative role in tumorigenesis as deletion causes tumor formation.Involved in intracellular protein trafficking of a number ofproteins. Targets PKN1 to endosomes and is involved in traffickingof the EGF receptor from late endosomes to lysosomes. Alsorequired for stability and nuclear trafficking of AKT1/AKT whichpromotes endothelial cell survival during vascular development.Serves as a microtubule-dependent signal that is required for themyosin contractile ring formation during cell cycle cytokinesis.Required for genotoxic stress-induced cell death in breast cancercells. {ECO:0000269|PubMed:10508588, ECO:0000269|PubMed:15226397,ECO:0000269|PubMed:16236794, ECO:0000269|PubMed:21373644,ECO:0000269|PubMed:9478917}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for NCOA2_RHOB


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for NCOA2_RHOB


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for NCOA2_RHOB


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status
HgeneNCOA2Q15596DB00255DiethylstilbestrolNuclear receptor coactivator 2small moleculeapproved|investigational
HgeneNCOA2Q15596DB00783EstradiolNuclear receptor coactivator 2small moleculeapproved|investigational|vet_approved
TgeneRHOBP62745DB00083Botulinum Toxin Type ARho-related GTP-binding protein RhoBbiotechapproved|investigational

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RelatedDiseases for NCOA2_RHOB


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneNCOA2C0033578Prostatic Neoplasms1CTD_human
HgeneNCOA2C1458155Mammary Neoplasms1CTD_human
TgeneRHOBC0036421Systemic Scleroderma1CTD_human