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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 23264

FusionGeneSummary for N4BP2L2_ZMYM5

check button Fusion gene summary
Fusion gene informationFusion gene name: N4BP2L2_ZMYM5
Fusion gene ID: 23264
HgeneTgene
Gene symbol

N4BP2L2

ZMYM5

Gene ID

10443

9205

Gene nameNEDD4 binding protein 2 like 2zinc finger MYM-type containing 5
Synonyms92M18.3|CG005|CG016|PFAAP5HSPC050|MYM|ZNF198L1|ZNF237
Cytomap

13q13.1

13q12.11

Type of geneprotein-codingprotein-coding
DescriptionNEDD4-binding protein 2-like 2phosphonoformate immuno-associated protein 5protein from BRCA2 regionzinc finger MYM-type protein 5zinc finger protein 198-like 1zinc finger protein 237zinc finger, MYM-type 5
Modification date2018051920180523
UniProtAcc

Q92802

Q9UJ78

Ensembl transtripts involved in fusion geneENST00000380121, ENST00000504114, 
ENST00000357505, ENST00000399396, 
ENST00000446957, ENST00000267068, 
ENST00000337963, ENST00000382907, 
ENST00000382905, 
Fusion gene scores* DoF score7 X 8 X 4=2241 X 1 X 1=1
# samples 201
** MAII scorelog2(20/224*10)=-0.163498732282879
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(1/1*10)=3.32192809488736
Context

PubMed: N4BP2L2 [Title/Abstract] AND ZMYM5 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGARVSKCMTCGA-ER-A42L-06AN4BP2L2chr13

33112755

-ZMYM5chr13

20413125

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
intron-3CDSENST00000380121ENST00000337963N4BP2L2chr13

33112755

-ZMYM5chr13

20413125

-
intron-intronENST00000380121ENST00000382907N4BP2L2chr13

33112755

-ZMYM5chr13

20413125

-
intron-intronENST00000380121ENST00000382905N4BP2L2chr13

33112755

-ZMYM5chr13

20413125

-
5UTR-3CDSENST00000504114ENST00000337963N4BP2L2chr13

33112755

-ZMYM5chr13

20413125

-
5UTR-intronENST00000504114ENST00000382907N4BP2L2chr13

33112755

-ZMYM5chr13

20413125

-
5UTR-intronENST00000504114ENST00000382905N4BP2L2chr13

33112755

-ZMYM5chr13

20413125

-
5UTR-3CDSENST00000357505ENST00000337963N4BP2L2chr13

33112755

-ZMYM5chr13

20413125

-
5UTR-intronENST00000357505ENST00000382907N4BP2L2chr13

33112755

-ZMYM5chr13

20413125

-
5UTR-intronENST00000357505ENST00000382905N4BP2L2chr13

33112755

-ZMYM5chr13

20413125

-
intron-3CDSENST00000399396ENST00000337963N4BP2L2chr13

33112755

-ZMYM5chr13

20413125

-
intron-intronENST00000399396ENST00000382907N4BP2L2chr13

33112755

-ZMYM5chr13

20413125

-
intron-intronENST00000399396ENST00000382905N4BP2L2chr13

33112755

-ZMYM5chr13

20413125

-
intron-3CDSENST00000446957ENST00000337963N4BP2L2chr13

33112755

-ZMYM5chr13

20413125

-
intron-intronENST00000446957ENST00000382907N4BP2L2chr13

33112755

-ZMYM5chr13

20413125

-
intron-intronENST00000446957ENST00000382905N4BP2L2chr13

33112755

-ZMYM5chr13

20413125

-
5UTR-3CDSENST00000267068ENST00000337963N4BP2L2chr13

33112755

-ZMYM5chr13

20413125

-
5UTR-intronENST00000267068ENST00000382907N4BP2L2chr13

33112755

-ZMYM5chr13

20413125

-
5UTR-intronENST00000267068ENST00000382905N4BP2L2chr13

33112755

-ZMYM5chr13

20413125

-

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FusionProtFeatures for N4BP2L2_ZMYM5


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
N4BP2L2

Q92802

ZMYM5

Q9UJ78


check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for N4BP2L2_ZMYM5


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for N4BP2L2_ZMYM5


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
N4BP2L2PRPF4, LGR4, HOXA1, LMO2, PPIH, NAA38, PRMT6, CGRRF1, TMPRSS5, WNT4, PRG2, PPIA, KIAA1683, SIRT6, HNRNPLL, PIGT, LYZL1, RFXANK, LGALS3BP, LYPD4, OLFM2, DNAJC10, NCAPH2, WNT16, PROZ, F11, IRAK2, NXF2ZMYM5APP, SUMO1, SUMO2, PRMT1, ACAD11, RPS6KA2, RPS6KA3, GTF2IRD1


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for N4BP2L2_ZMYM5


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for N4BP2L2_ZMYM5


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneN4BP2L2C0037274Dermatologic disorders1CTD_human
HgeneN4BP2L2C0311375Arsenic Poisoning1CTD_human
TgeneZMYM5C0032460Polycystic Ovary Syndrome1CTD_human