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Fusion gene ID: 23200 |
FusionGeneSummary for MYO9B_ADAM12 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: MYO9B_ADAM12 | Fusion gene ID: 23200 | Hgene | Tgene | Gene symbol | MYO9B | ADAM12 | Gene ID | 4650 | 8038 |
| Gene name | myosin IXB | ADAM metallopeptidase domain 12 | |
| Synonyms | CELIAC4|MYR5 | ADAM12-OT1|CAR10|MCMP|MCMPMltna|MLTN|MLTNA | |
| Cytomap | 19p13.11 | 10q26.2 | |
| Type of gene | protein-coding | protein-coding | |
| Description | unconventional myosin-IXbmyosin-IXbunconventional myosin-9b | disintegrin and metalloproteinase domain-containing protein 12meltrin-alphametalloprotease-disintegrin 12 transmembrane | |
| Modification date | 20180519 | 20180522 | |
| UniProtAcc | Q13459 | O43184 | |
| Ensembl transtripts involved in fusion gene | ENST00000595618, ENST00000594824, ENST00000397274, ENST00000593411, | ENST00000368679, ENST00000368676, ENST00000467145, | |
| Fusion gene scores | * DoF score | 13 X 8 X 7=728 | 13 X 14 X 4=728 |
| # samples | 13 | 17 | |
| ** MAII score | log2(13/728*10)=-2.48542682717024 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(17/728*10)=-2.09840370406099 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: MYO9B [Title/Abstract] AND ADAM12 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | MYO9B | GO:0030048 | actin filament-based movement | 9490638 |
| Hgene | MYO9B | GO:0032011 | ARF protein signal transduction | 15644318 |
| Hgene | MYO9B | GO:0035385 | Roundabout signaling pathway | 26529257 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChiTaRS3.1 | BF997417 | MYO9B | chr19 | 17295674 | - | ADAM12 | chr10 | 127990197 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| intron-intron | ENST00000595618 | ENST00000368679 | MYO9B | chr19 | 17295674 | - | ADAM12 | chr10 | 127990197 | + |
| intron-intron | ENST00000595618 | ENST00000368676 | MYO9B | chr19 | 17295674 | - | ADAM12 | chr10 | 127990197 | + |
| intron-intron | ENST00000595618 | ENST00000467145 | MYO9B | chr19 | 17295674 | - | ADAM12 | chr10 | 127990197 | + |
| intron-intron | ENST00000594824 | ENST00000368679 | MYO9B | chr19 | 17295674 | - | ADAM12 | chr10 | 127990197 | + |
| intron-intron | ENST00000594824 | ENST00000368676 | MYO9B | chr19 | 17295674 | - | ADAM12 | chr10 | 127990197 | + |
| intron-intron | ENST00000594824 | ENST00000467145 | MYO9B | chr19 | 17295674 | - | ADAM12 | chr10 | 127990197 | + |
| intron-intron | ENST00000397274 | ENST00000368679 | MYO9B | chr19 | 17295674 | - | ADAM12 | chr10 | 127990197 | + |
| intron-intron | ENST00000397274 | ENST00000368676 | MYO9B | chr19 | 17295674 | - | ADAM12 | chr10 | 127990197 | + |
| intron-intron | ENST00000397274 | ENST00000467145 | MYO9B | chr19 | 17295674 | - | ADAM12 | chr10 | 127990197 | + |
| intron-intron | ENST00000593411 | ENST00000368679 | MYO9B | chr19 | 17295674 | - | ADAM12 | chr10 | 127990197 | + |
| intron-intron | ENST00000593411 | ENST00000368676 | MYO9B | chr19 | 17295674 | - | ADAM12 | chr10 | 127990197 | + |
| intron-intron | ENST00000593411 | ENST00000467145 | MYO9B | chr19 | 17295674 | - | ADAM12 | chr10 | 127990197 | + |
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FusionProtFeatures for MYO9B_ADAM12 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| MYO9B | ADAM12 |
| Myosins are actin-based motor molecules with ATPaseactivity. Unconventional myosins serve in intracellular movements.Binds actin with high affinity both in the absence and presence ofATP and its mechanochemical activity is inhibited by calcium ions(PubMed:9490638). Also acts as a GTPase activator for RHOA(PubMed:9490638, PubMed:26529257). Plays a role in the regulationof cell migration via its role as RHOA GTPase activator. This isregulated by its interaction with the SLIT2 receptor ROBO1;interaction with ROBO1 impairs interaction with RHOA andsubsequent activation of RHOA GTPase activity, and thereby leadsto increased levels of active, GTP-bound RHOA (PubMed:26529257).{ECO:0000269|PubMed:26529257, ECO:0000269|PubMed:9490638}. | Involved in skeletal muscle regeneration, specificallyat the onset of cell fusion. Also involved in macrophage-derivedgiant cells (MGC) and osteoclast formation from mononuclearprecursors (By similarity). {ECO:0000250}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for MYO9B_ADAM12 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for MYO9B_ADAM12 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for MYO9B_ADAM12 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for MYO9B_ADAM12 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | MYO9B | C0036341 | Schizophrenia | 3 | PSYGENET |
| Tgene | ADAM12 | C0036341 | Schizophrenia | 1 | PSYGENET |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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