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Fusion gene ID: 23031 |
FusionGeneSummary for MYH9_USP6 |
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Fusion gene information | Fusion gene name: MYH9_USP6 | Fusion gene ID: 23031 | Hgene | Tgene | Gene symbol | MYH9 | USP6 | Gene ID | 4627 | 9098 |
Gene name | myosin heavy chain 9 | ubiquitin specific peptidase 6 | |
Synonyms | BDPLT6|DFNA17|EPSTS|FTNS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA | HRP1|TRE17|TRE2|TRESMCR|Tre-2|USP6-short | |
Cytomap | 22q12.3 | 17p13.2 | |
Type of gene | protein-coding | protein-coding | |
Description | myosin-9cellular myosin heavy chain, type Amyosin, heavy chain 9, non-musclenon-muscle myosin heavy chain 9non-muscle myosin heavy chain Anon-muscle myosin heavy chain IIanon-muscle myosin heavy polypeptide 9nonmuscle myosin heavy chain II-A | ubiquitin carboxyl-terminal hydrolase 6TBC1D3 and USP32 fusiondeubiquitinating enzyme 6hyperpolymorphic gene 1proto-oncogene TRE-2ubiquitin specific peptidase 6 (Tre-2 oncogene)ubiquitin specific protease 6 (Tre-2 oncogene)ubiquitin thioesterase 6 | |
Modification date | 20180522 | 20180523 | |
UniProtAcc | P35579 | P35125 | |
Ensembl transtripts involved in fusion gene | ENST00000216181, ENST00000475726, ENST00000401701, | ENST00000332776, ENST00000574788, ENST00000304328, ENST00000250066, ENST00000572429, | |
Fusion gene scores | * DoF score | 36 X 33 X 15=17820 | 6 X 5 X 1=30 |
# samples | 50 | 12 | |
** MAII score | log2(50/17820*10)=-5.1554254317472 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(12/30*10)=2 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: MYH9 [Title/Abstract] AND USP6 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | MYH9 | GO:0001525 | angiogenesis | 16403913 |
Hgene | MYH9 | GO:0006509 | membrane protein ectodomain proteolysis | 16186248 |
Hgene | MYH9 | GO:0030048 | actin filament-based movement | 12237319|15845534 |
Hgene | MYH9 | GO:0031032 | actomyosin structure organization | 24072716 |
Tgene | USP6 | GO:0016579 | protein deubiquitination | 16127172 |
Tgene | USP6 | GO:0060627 | regulation of vesicle-mediated transport | 15509780 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | HQ326700 | MYH9 | chr22 | 36783851 | - | USP6 | chr17 | 5033229 | + | ||
ChiTaRS3.1 | HQ326701 | MYH9 | chr22 | 36783851 | - | USP6 | chr17 | 5033659 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5UTR-5UTR | ENST00000216181 | ENST00000332776 | MYH9 | chr22 | 36783851 | - | USP6 | chr17 | 5033229 | + |
5UTR-5UTR | ENST00000216181 | ENST00000574788 | MYH9 | chr22 | 36783851 | - | USP6 | chr17 | 5033229 | + |
5UTR-5UTR | ENST00000216181 | ENST00000304328 | MYH9 | chr22 | 36783851 | - | USP6 | chr17 | 5033229 | + |
5UTR-5UTR | ENST00000216181 | ENST00000250066 | MYH9 | chr22 | 36783851 | - | USP6 | chr17 | 5033229 | + |
5UTR-intron | ENST00000216181 | ENST00000572429 | MYH9 | chr22 | 36783851 | - | USP6 | chr17 | 5033229 | + |
intron-5UTR | ENST00000475726 | ENST00000332776 | MYH9 | chr22 | 36783851 | - | USP6 | chr17 | 5033229 | + |
intron-5UTR | ENST00000475726 | ENST00000574788 | MYH9 | chr22 | 36783851 | - | USP6 | chr17 | 5033229 | + |
intron-5UTR | ENST00000475726 | ENST00000304328 | MYH9 | chr22 | 36783851 | - | USP6 | chr17 | 5033229 | + |
intron-5UTR | ENST00000475726 | ENST00000250066 | MYH9 | chr22 | 36783851 | - | USP6 | chr17 | 5033229 | + |
intron-intron | ENST00000475726 | ENST00000572429 | MYH9 | chr22 | 36783851 | - | USP6 | chr17 | 5033229 | + |
intron-5UTR | ENST00000401701 | ENST00000332776 | MYH9 | chr22 | 36783851 | - | USP6 | chr17 | 5033229 | + |
intron-5UTR | ENST00000401701 | ENST00000574788 | MYH9 | chr22 | 36783851 | - | USP6 | chr17 | 5033229 | + |
intron-5UTR | ENST00000401701 | ENST00000304328 | MYH9 | chr22 | 36783851 | - | USP6 | chr17 | 5033229 | + |
intron-5UTR | ENST00000401701 | ENST00000250066 | MYH9 | chr22 | 36783851 | - | USP6 | chr17 | 5033229 | + |
intron-intron | ENST00000401701 | ENST00000572429 | MYH9 | chr22 | 36783851 | - | USP6 | chr17 | 5033229 | + |
5UTR-5UTR | ENST00000216181 | ENST00000332776 | MYH9 | chr22 | 36783851 | - | USP6 | chr17 | 5033659 | + |
5UTR-5UTR | ENST00000216181 | ENST00000574788 | MYH9 | chr22 | 36783851 | - | USP6 | chr17 | 5033659 | + |
5UTR-5UTR | ENST00000216181 | ENST00000304328 | MYH9 | chr22 | 36783851 | - | USP6 | chr17 | 5033659 | + |
5UTR-5UTR | ENST00000216181 | ENST00000250066 | MYH9 | chr22 | 36783851 | - | USP6 | chr17 | 5033659 | + |
5UTR-intron | ENST00000216181 | ENST00000572429 | MYH9 | chr22 | 36783851 | - | USP6 | chr17 | 5033659 | + |
intron-5UTR | ENST00000475726 | ENST00000332776 | MYH9 | chr22 | 36783851 | - | USP6 | chr17 | 5033659 | + |
intron-5UTR | ENST00000475726 | ENST00000574788 | MYH9 | chr22 | 36783851 | - | USP6 | chr17 | 5033659 | + |
intron-5UTR | ENST00000475726 | ENST00000304328 | MYH9 | chr22 | 36783851 | - | USP6 | chr17 | 5033659 | + |
intron-5UTR | ENST00000475726 | ENST00000250066 | MYH9 | chr22 | 36783851 | - | USP6 | chr17 | 5033659 | + |
intron-intron | ENST00000475726 | ENST00000572429 | MYH9 | chr22 | 36783851 | - | USP6 | chr17 | 5033659 | + |
intron-5UTR | ENST00000401701 | ENST00000332776 | MYH9 | chr22 | 36783851 | - | USP6 | chr17 | 5033659 | + |
intron-5UTR | ENST00000401701 | ENST00000574788 | MYH9 | chr22 | 36783851 | - | USP6 | chr17 | 5033659 | + |
intron-5UTR | ENST00000401701 | ENST00000304328 | MYH9 | chr22 | 36783851 | - | USP6 | chr17 | 5033659 | + |
intron-5UTR | ENST00000401701 | ENST00000250066 | MYH9 | chr22 | 36783851 | - | USP6 | chr17 | 5033659 | + |
intron-intron | ENST00000401701 | ENST00000572429 | MYH9 | chr22 | 36783851 | - | USP6 | chr17 | 5033659 | + |
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FusionProtFeatures for MYH9_USP6 |
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Hgene | Tgene |
MYH9 | USP6 |
Cellular myosin that appears to play a role incytokinesis, cell shape, and specialized functions such assecretion and capping. During cell spreading, plays an importantrole in cytoskeleton reorganization, focal contacts formation (inthe margins but not the central part of spreading cells), andlamellipodial retraction; this function is mechanicallyantagonized by MYH10. {ECO:0000269|PubMed:20052411}. | Deubiquitinase with an ATP-independent isopeptidaseactivity, cleaving at the C-terminus of the ubiquitin moiety.Catalyzes its own deubiquitination. In vitro, isoform 2, but notisoform 3, shows deubiquitinating activity. Promotes plasmamembrane localization of ARF6 and selectively regulates ARF6-dependent endocytic protein trafficking. Is able to initiatetumorigenesis by inducing the production of matrixmetalloproteinases following NF-kappa-B activation.{ECO:0000269|PubMed:15509780, ECO:0000269|PubMed:16127172,ECO:0000269|PubMed:20418905}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for MYH9_USP6 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for MYH9_USP6 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
MYH9 | EPB41, MARK4, ASCC2, MYL9, PRKCE, USP1, USP45, GRB2, RAC1, YWHAZ, EMD, TERF1, TERF2, CBL, PPP2R4, AGO3, YWHAQ, MME, HDAC5, NCOA3, CREBBP, UBE3A, ARRB1, ARRB2, SIRT7, TRAF4, SP1, ISG15, FBXO25, CDK2, CUL1, TRIM72, GRK5, UBASH3B, PIK3R2, SHC1, MYL6, SPTAN1, HSP90AB1, ACTA2, MYH10, HNRNPU, FLNA, ACTR1A, RAB11A, EIF4B, SEL1L, ATP5A1, SEPT7, RALA, HSPA5, TUBA4A, EIF3A, EIF3C, TPM4, MRPS18B, PSME3, HSPA1A, ESR1, TSGA10, EIF4A3, MAGOH, TRAF3IP1, MEN1, HSP90AA1, VCAM1, FN1, IQCB1, ITGA4, PAN2, ACE, ACTB, CSNK2A1, PIK3C3, PPP2CA, CASP4, TARDBP, AKAP10, CDC73, MYH14, OTUD6B, MYL12A, RPA1, RPA2, RPA3, LGR4, IVNS1ABP, TP53, HUWE1, ALK, UBE2I, EED, AMFR, OS9, SYVN1, ATG9A, USP7, HNRNPA1, ATP5L, MYO1E, SRSF5, SSB, NTRK1, ACTA1, ACTG1, ACTN4, ACTN1, AP2A1, AP2B1, ANXA2, APOB, DST, CALD1, CALM1, CALML3, CAPZA1, CAPZA2, CAPZB, CD44, CFL1, CFL2, AP2M1, CLTA, CLTB, CLTC, CPM, DAB2, DAPK3, DBN1, DSG2, CTTN, STOM, EPS15, FLII, FLNB, FYN, GNAI1, GNAI2, GNAS, GNB2, GSN, HIP1, ITPR2, ITPR3, JUP, LGALS1, ABLIM1, LMO7, LSS, LYN, MYO1B, MSN, PDLIM7, ANLN, MYO19, MYO18A, MYLK, MYO1C, MYO5A, MYO5B, MYO6, PPP1R12A, PPP1R12B, NAP1L1, PAWR, PIK3C2A, PLEC, PLS1, PPIA, PPP1CA, PPP1CB, PPP1CC, PSMB10, TWF1, PEX5, RPL22, SIPA1, SORD, SPTBN1, SPTBN2, SSFA2, ST5, SVIL, TCEA2, TMOD1, TNFAIP1, TPM1, TPM2, TPM3, CORO2A, YES1, LUZP1, PICALM, PIP5K1A, SORBS2, IQGAP1, HIP1R, GPRC5A, LRRFIP2, CLINT1, ARHGAP11A, ARHGEF17, SEC16A, WDR1, ARPC4, ARPC3, ARPC1B, ACTR3, ACTR2, ARPC2, BCAP31, FLOT1, BASP1, IMMT, RBPMS, DSTN, TRIOBP, CEP250, AKAP2, TWF2, SYNPO, CEP162, LIMCH1, PALLD, SIPA1L3, MPRIP, COBL, KIF13B, SPECC1L, ATP13A2, MACF1, CORO1C, STX12, GCA, PLEKHG3, RAI14, ZBTB20, AHDC1, PACSIN3, TMOD3, PNMA3, FCF1, CEP83, LIMA1, GTSE1, KDM3B, UACA, CDCA8, BMP2K, UNC45A, MYO5C, GNG12, MUC13, CORO1B, MICAL3, ARHGAP21, SHROOM3, AFAP1, INF2, NARFL, METTL17, AHNAK, EFHD2, CYBRD1, WDR76, DSN1, RNF170, TRIM56, ARPC5L, ANTXR1, LZTS2, PPP1R9B, CEP89, STON2, DOCK7, DIXDC1, SSH2, NEXN, ELMSAN1, SPECC1, CCDC102A, FCHO2, MISP, JMY, CD109, ACTRT1, MYL6B, CCDC50, OARD1, GAS2L3, TTLL6, TPRN, ACTBL2, MCM2, MCM5, SNW1, CDC5L, BOP1, PES1, EGFR, CDH1, C9orf156, MYL3, H2AFY, CYLD, TRIM25, BRCA1, HDAC6 | USP6 | USP32, CALM2, RAC1, CDC42, RAB33B, ARF6, MYL2, ANKRD44, ATXN7L3, APP, MDFI, EXOSC8, KRAS, JUN |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for MYH9_USP6 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Hgene | MYH9 | P35579 | DB11638 | Artenimol | Myosin-9 | small molecule | approved|investigational |
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RelatedDiseases for MYH9_USP6 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | MYH9 | C0403445 | Fechtner syndrome (disorder) | 9 | UNIPROT |
Hgene | MYH9 | C0398641 | Epstein syndrome (disorder) | 7 | UNIPROT |
Hgene | MYH9 | C0340978 | May-Hegglin anomaly | 6 | UNIPROT |
Hgene | MYH9 | C0022661 | Kidney Failure, Chronic | 2 | CTD_human |
Hgene | MYH9 | C1854520 | SEBASTIAN SYNDROME | 2 | CTD_human;ORPHANET;UNIPROT |
Hgene | MYH9 | C0017668 | Focal glomerulosclerosis | 1 | CTD_human |
Hgene | MYH9 | C0020544 | Renal hypertension | 1 | CTD_human |
Hgene | MYH9 | C0027706 | Hereditary nephritis | 1 | CTD_human |
Hgene | MYH9 | C0036341 | Schizophrenia | 1 | PSYGENET |
Hgene | MYH9 | C1863659 | DEAFNESS, AUTOSOMAL DOMINANT 17 | 1 | UNIPROT |
Hgene | MYH9 | C2673482 | Increased susceptibility to schizophrenia | 1 | PSYGENET |