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Fusion gene ID: 22831 |
FusionGeneSummary for MTR_IFI16 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: MTR_IFI16 | Fusion gene ID: 22831 | Hgene | Tgene | Gene symbol | MTR | IFI16 | Gene ID | 4548 | 3428 |
| Gene name | 5-methyltetrahydrofolate-homocysteine methyltransferase | interferon gamma inducible protein 16 | |
| Synonyms | HMAG|MS|cblG | IFNGIP1|PYHIN2 | |
| Cytomap | 1q43 | 1q23.1 | |
| Type of gene | protein-coding | protein-coding | |
| Description | methionine synthase5-methyltetrahydrofolate-homocysteine methyltransferase 1cobalamin-dependent methionine synthasevitamin-B12 dependent methionine synthase | gamma-interferon-inducible protein 16interferon-gamma induced protein IFI 16interferon-inducible myeloid differentiation transcriptional activator | |
| Modification date | 20180523 | 20180519 | |
| UniProtAcc | Q99707 | Q16666 | |
| Ensembl transtripts involved in fusion gene | ENST00000366577, ENST00000418145, ENST00000535889, ENST00000470570, | ENST00000340979, ENST00000368131, ENST00000368132, ENST00000295809, ENST00000430894, ENST00000359709, ENST00000448393, | |
| Fusion gene scores | * DoF score | 5 X 5 X 2=50 | 4 X 3 X 3=36 |
| # samples | 6 | 4 | |
| ** MAII score | log2(6/50*10)=0.263034405833794 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(4/36*10)=0.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
| Context | PubMed: MTR [Title/Abstract] AND IFI16 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Tgene | IFI16 | GO:0000122 | negative regulation of transcription by RNA polymerase II | 12894224|24413532 |
| Tgene | IFI16 | GO:0002218 | activation of innate immune response | 21575908 |
| Tgene | IFI16 | GO:0030224 | monocyte differentiation | 9766636 |
| Tgene | IFI16 | GO:0032731 | positive regulation of interleukin-1 beta production | 21575908 |
| Tgene | IFI16 | GO:0042149 | cellular response to glucose starvation | 21573174 |
| Tgene | IFI16 | GO:0042771 | intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator | 14654789 |
| Tgene | IFI16 | GO:0043392 | negative regulation of DNA binding | 22291595 |
| Tgene | IFI16 | GO:0045071 | negative regulation of viral genome replication | 22291595 |
| Tgene | IFI16 | GO:0045824 | negative regulation of innate immune response | 22046441 |
| Tgene | IFI16 | GO:0045892 | negative regulation of transcription, DNA-templated | 9642285 |
| Tgene | IFI16 | GO:0045944 | positive regulation of transcription by RNA polymerase II | 11146555 |
| Tgene | IFI16 | GO:0051607 | defense response to virus | 21478870 |
| Tgene | IFI16 | GO:0071479 | cellular response to ionizing radiation | 14654789 |
| Tgene | IFI16 | GO:2000117 | negative regulation of cysteine-type endopeptidase activity | 22046441 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | LD | BRCA | TCGA-A8-A07O-01A | MTR | chr1 | 237001899 | + | IFI16 | chr1 | 159019222 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 5CDS-intron | ENST00000366577 | ENST00000340979 | MTR | chr1 | 237001899 | + | IFI16 | chr1 | 159019222 | + |
| 5CDS-intron | ENST00000366577 | ENST00000368131 | MTR | chr1 | 237001899 | + | IFI16 | chr1 | 159019222 | + |
| 5CDS-intron | ENST00000366577 | ENST00000368132 | MTR | chr1 | 237001899 | + | IFI16 | chr1 | 159019222 | + |
| 5CDS-intron | ENST00000366577 | ENST00000295809 | MTR | chr1 | 237001899 | + | IFI16 | chr1 | 159019222 | + |
| 5CDS-intron | ENST00000366577 | ENST00000430894 | MTR | chr1 | 237001899 | + | IFI16 | chr1 | 159019222 | + |
| 5CDS-intron | ENST00000366577 | ENST00000359709 | MTR | chr1 | 237001899 | + | IFI16 | chr1 | 159019222 | + |
| 5CDS-intron | ENST00000366577 | ENST00000448393 | MTR | chr1 | 237001899 | + | IFI16 | chr1 | 159019222 | + |
| intron-intron | ENST00000418145 | ENST00000340979 | MTR | chr1 | 237001899 | + | IFI16 | chr1 | 159019222 | + |
| intron-intron | ENST00000418145 | ENST00000368131 | MTR | chr1 | 237001899 | + | IFI16 | chr1 | 159019222 | + |
| intron-intron | ENST00000418145 | ENST00000368132 | MTR | chr1 | 237001899 | + | IFI16 | chr1 | 159019222 | + |
| intron-intron | ENST00000418145 | ENST00000295809 | MTR | chr1 | 237001899 | + | IFI16 | chr1 | 159019222 | + |
| intron-intron | ENST00000418145 | ENST00000430894 | MTR | chr1 | 237001899 | + | IFI16 | chr1 | 159019222 | + |
| intron-intron | ENST00000418145 | ENST00000359709 | MTR | chr1 | 237001899 | + | IFI16 | chr1 | 159019222 | + |
| intron-intron | ENST00000418145 | ENST00000448393 | MTR | chr1 | 237001899 | + | IFI16 | chr1 | 159019222 | + |
| 5CDS-intron | ENST00000535889 | ENST00000340979 | MTR | chr1 | 237001899 | + | IFI16 | chr1 | 159019222 | + |
| 5CDS-intron | ENST00000535889 | ENST00000368131 | MTR | chr1 | 237001899 | + | IFI16 | chr1 | 159019222 | + |
| 5CDS-intron | ENST00000535889 | ENST00000368132 | MTR | chr1 | 237001899 | + | IFI16 | chr1 | 159019222 | + |
| 5CDS-intron | ENST00000535889 | ENST00000295809 | MTR | chr1 | 237001899 | + | IFI16 | chr1 | 159019222 | + |
| 5CDS-intron | ENST00000535889 | ENST00000430894 | MTR | chr1 | 237001899 | + | IFI16 | chr1 | 159019222 | + |
| 5CDS-intron | ENST00000535889 | ENST00000359709 | MTR | chr1 | 237001899 | + | IFI16 | chr1 | 159019222 | + |
| 5CDS-intron | ENST00000535889 | ENST00000448393 | MTR | chr1 | 237001899 | + | IFI16 | chr1 | 159019222 | + |
| intron-intron | ENST00000470570 | ENST00000340979 | MTR | chr1 | 237001899 | + | IFI16 | chr1 | 159019222 | + |
| intron-intron | ENST00000470570 | ENST00000368131 | MTR | chr1 | 237001899 | + | IFI16 | chr1 | 159019222 | + |
| intron-intron | ENST00000470570 | ENST00000368132 | MTR | chr1 | 237001899 | + | IFI16 | chr1 | 159019222 | + |
| intron-intron | ENST00000470570 | ENST00000295809 | MTR | chr1 | 237001899 | + | IFI16 | chr1 | 159019222 | + |
| intron-intron | ENST00000470570 | ENST00000430894 | MTR | chr1 | 237001899 | + | IFI16 | chr1 | 159019222 | + |
| intron-intron | ENST00000470570 | ENST00000359709 | MTR | chr1 | 237001899 | + | IFI16 | chr1 | 159019222 | + |
| intron-intron | ENST00000470570 | ENST00000448393 | MTR | chr1 | 237001899 | + | IFI16 | chr1 | 159019222 | + |
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FusionProtFeatures for MTR_IFI16 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| MTR | IFI16 |
| Catalyzes the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin andmethionine. Subsequently, remethylates the cofactor usingmethyltetrahydrofolate (By similarity). {ECO:0000250}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for MTR_IFI16 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for MTR_IFI16 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| MTR | TSC22D1, UBC, ELAVL1, LSM4, DHX16, NAPG, ILF2, CDK18, CDKN2A, DPP9, ARPC1A, ARPC2, CALU, THG1L, TPD52L2, MOV10, NXF1, AKAP13, NTRK1, BTRC, B9D1, B9D2, CEP19, NEK8, XRCC3, FAM196A, DOCK5, LINC01587, IQCF1, LPCAT1, SPATA5L1 | IFI16 | TP53, SP1, BRCA1, APP, NOTCH1, IGSF8, ICAM1, MDM2, AR, TMEM173, SCARNA22, ACADVL, ACIN1, ADAR, ADD1, AHCTF1, ASCC3, BAZ1B, BAZ2A, BOP1, BYSL, CBX1, CBX3, CEBPZ, CEP170, DDX18, DDX24, DDX27, DDX47, DHX30, DKC1, EDC4, EXOSC10, EXOSC4, FLII, FXR1, PAEP, GLYR1, GNL3, GTPBP4, H1F0, HEATR1, HELZ2, HLA-A, HLA-C, HP1BP3, HUWE1, INF2, KIF23, KRI1, LARP7, LAS1L, LGALS7, LRRFIP1, LRRFIP2, LZTR1, MAPK3, MKI67, NIFK, MRTO4, NAT10, NHP2, NMNAT1, NOC2L, NOL10, NOL11, NOL6, NUMA1, NUP153, NVL, NXF1, OSBPL8, PAF1, PBRM1, PDCD11, PDCD6IP, PELP1, PHIP, POLDIP3, POLR2A, POLR2B, POM121C, POP1, PRKAR1A, PRKRA, PRRC2A, PWP1, RBM19, RBM28, RBM34, RRP12, RRP1B, SDCBP, SKIV2L2, SMARCA1, SMARCA5, SMARCC2, SNRNP27, SNX6, SON, SP100, SPATS2L, SQSTM1, SRP72, STAU1, SUN1, SVIL, TBL3, TEX10, TJP1, TNKS1BP1, TOP2A, TRIM26, USP7, UTP6, WDR36, WHSC1, ZNF512, AAAS, AATF, APOBEC3C, ATAD2, BRIX1, BTF3, CCDC86, CDC42, CIRH1A, CKAP5, CSNK2A2, CSNK2B, CUL4A, DBP, DCAF13, DDX28, DDX51, DDX52, DDX56, DDX60L, DNAJC10, DNTTIP2, DOCK7, DYNLL1, EIF2AK2, EIF3K, EXOSC6, FGF2, FHL2, FTSJ3, FXR2, GLE1, GRWD1, GSDMA, IFIT2, IMP4, IPO7, KIAA0020, LEMD2, MCM3AP, MPHOSPH10, NDC1, NGDN, NKRF, NLE1, NOC4L, NOP16, NSA2, NUP133, NUP188, NUP205, NUP214, NUP37, NUP62, NUP85, NUP88, NUP93, NUP98, PDAP1, PLRG1, PML, PPHLN1, PPP2CB, PRPF40A, PSPC1, PTPLAD1, PWP2, RAB14, RAE1, RCL1, RGPD8, RNF213, RPF2, RPP30, RRP9, RSL24D1, SAP18, SEH1L, SMCHD1, SSRP1, SUMO1, SUN2, SYNE1, TKT, TMEM43, URB1, UTP15, UTP18, WDR12, WDR3, WDR43, WDR46, WDR75, WTAP, TFG, C17orf85, C8orf33, TLDC1, SPATS2, ZCCHC3, RGPD3, LSM12, TMEM209, AGO2, APOBEC3B, BMS1, BRD1, CARM1, CBX5, CCDC137, CDK1, CENPB, CENPV, CNOT1, COIL, CRNKL1, CTCF, CTNND1, DDX10, DDX54, DHX16, DHX29, DHX33, DHX36, DHX57, DHX8, EBNA1BP2, EIF6, EMG1, ESF1, EXOSC2, EXOSC3, EXOSC7, EXOSC8, FAM208A, FBXW11, FCF1, FMR1, GNL2, H2AFY, H2AFY2, INCENP, KAT7, KHDRBS3, KRR1, LARP1, LARP4B, LYAR, MAK16, MBD2, MPHOSPH8, NCBP1, NEMF, NHP2L1, NOC3L, NOL9, NUP107, NUP160, NUP35, NUP43, NUP50, NUP54, NUPL1, PAK1IP1, PCID2, PES1, PHF14, PIP4K2A, PNN, POP4, PPAN, PRPF38A, RACGAP1, RBM14, RBM15, RBM25, RBM8A, REXO4, RFC2, RFC3, RPF1, RPL36A, RRP1, RRP8, RRS1, SART1, SART3, SEC13, SENP3, SMU1, SRP68, SRPK1, SRRM1, SSFA2, STK3, SUPT16H, SUPT5H, TCEB1, TOP2B, TOR1AIP1, TRIM56, TRIP12, TSR1, UACA, UBTF, UPF1, URB2, USP36, UTP11L, UTP14A, UTP20, UTP3, WDR18, WDR61, WDR74, XAB2, XRN1, YTHDC1, YTHDC2, ZC3H14, ZC3HAV1, ZNF574, ZNF579, ZNF638, HNRNPU, RPL10, PYCARD, CASP1, U2AF2, NFATC1, NFATC2, AURKA |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for MTR_IFI16 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
| Hgene | MTR | Q99707 | DB00200 | Hydroxocobalamin | Methionine synthase | small molecule | approved |
| Hgene | MTR | Q99707 | DB11590 | Thimerosal | Methionine synthase | small molecule | approved |
| Hgene | MTR | Q99707 | DB00115 | Cyanocobalamin | Methionine synthase | small molecule | approved|nutraceutical |
| Hgene | MTR | Q99707 | DB00134 | Methionine | Methionine synthase | small molecule | approved|nutraceutical |
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RelatedDiseases for MTR_IFI16 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | MTR | C0011570 | Mental Depression | 2 | PSYGENET |
| Hgene | MTR | C0011581 | Depressive disorder | 2 | PSYGENET |
| Hgene | MTR | C0041755 | Adverse reaction to drug | 2 | CTD_human |
| Hgene | MTR | C1855128 | Methylcobalamin Deficiency, CblG Type | 2 | CTD_human;ORPHANET;UNIPROT |
| Hgene | MTR | C0001969 | Alcoholic Intoxication | 1 | PSYGENET |
| Hgene | MTR | C0005586 | Bipolar Disorder | 1 | PSYGENET |
| Hgene | MTR | C0008924 | Cleft Lip | 1 | CTD_human |
| Hgene | MTR | C0008925 | Cleft Palate | 1 | CTD_human |
| Hgene | MTR | C0017178 | Gastrointestinal Diseases | 1 | CTD_human |
| Hgene | MTR | C0018939 | Hematological Disease | 1 | CTD_human |
| Hgene | MTR | C0021364 | Male infertility | 1 | CTD_human |
| Hgene | MTR | C0024299 | Lymphoma | 1 | CTD_human |
| Hgene | MTR | C0024301 | Lymphoma, Follicular | 1 | CTD_human |
| Hgene | MTR | C0036341 | Schizophrenia | 1 | PSYGENET |
| Hgene | MTR | C0162429 | Malnutrition | 1 | CTD_human |
| Hgene | MTR | C0270612 | Leukoencephalopathies | 1 | CTD_human |
| Hgene | MTR | C0588008 | Severe depression | 1 | PSYGENET |
| Hgene | MTR | C1458155 | Mammary Neoplasms | 1 | CTD_human |
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