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Fusion gene ID: 22671 |
FusionGeneSummary for MSN_CAB39 |
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Fusion gene information | Fusion gene name: MSN_CAB39 | Fusion gene ID: 22671 | Hgene | Tgene | Gene symbol | MSN | CAB39 | Gene ID | 4478 | 51719 |
Gene name | moesin | calcium binding protein 39 | |
Synonyms | HEL70|IMD50 | CGI-66|MO25 | |
Cytomap | Xq12 | 2q37.1 | |
Type of gene | protein-coding | protein-coding | |
Description | moesinepididymis luminal protein 70membrane-organizing extension spike protein | calcium-binding protein 39MO25alpha | |
Modification date | 20180527 | 20180523 | |
UniProtAcc | P26038 | Q9Y376 | |
Ensembl transtripts involved in fusion gene | ENST00000609205, ENST00000360270, | ENST00000258418, ENST00000410084, ENST00000409788, ENST00000484398, | |
Fusion gene scores | * DoF score | 7 X 7 X 3=147 | 5 X 5 X 3=75 |
# samples | 8 | 7 | |
** MAII score | log2(8/147*10)=-0.877744249949002 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(7/75*10)=-0.0995356735509144 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: MSN [Title/Abstract] AND CAB39 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | MSN | GO:0001771 | immunological synapse formation | 27405666 |
Hgene | MSN | GO:0042098 | T cell proliferation | 27405666 |
Hgene | MSN | GO:0070489 | T cell aggregation | 27405666 |
Hgene | MSN | GO:0071394 | cellular response to testosterone stimulus | 24065547 |
Hgene | MSN | GO:0072678 | T cell migration | 27405666 |
Tgene | CAB39 | GO:0010800 | positive regulation of peptidyl-threonine phosphorylation | 24393035 |
Tgene | CAB39 | GO:0018105 | peptidyl-serine phosphorylation | 24393035 |
Tgene | CAB39 | GO:0023014 | signal transduction by protein phosphorylation | 24393035 |
Tgene | CAB39 | GO:0035556 | intracellular signal transduction | 24393035 |
Tgene | CAB39 | GO:0071902 | positive regulation of protein serine/threonine kinase activity | 19892943|24393035 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | AA234749 | MSN | chrX | 64960867 | - | CAB39 | chr2 | 231685610 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-3UTR | ENST00000609205 | ENST00000258418 | MSN | chrX | 64960867 | - | CAB39 | chr2 | 231685610 | - |
intron-intron | ENST00000609205 | ENST00000410084 | MSN | chrX | 64960867 | - | CAB39 | chr2 | 231685610 | - |
intron-intron | ENST00000609205 | ENST00000409788 | MSN | chrX | 64960867 | - | CAB39 | chr2 | 231685610 | - |
intron-intron | ENST00000609205 | ENST00000484398 | MSN | chrX | 64960867 | - | CAB39 | chr2 | 231685610 | - |
3UTR-3UTR | ENST00000360270 | ENST00000258418 | MSN | chrX | 64960867 | - | CAB39 | chr2 | 231685610 | - |
3UTR-intron | ENST00000360270 | ENST00000410084 | MSN | chrX | 64960867 | - | CAB39 | chr2 | 231685610 | - |
3UTR-intron | ENST00000360270 | ENST00000409788 | MSN | chrX | 64960867 | - | CAB39 | chr2 | 231685610 | - |
3UTR-intron | ENST00000360270 | ENST00000484398 | MSN | chrX | 64960867 | - | CAB39 | chr2 | 231685610 | - |
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FusionProtFeatures for MSN_CAB39 |
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Hgene | Tgene |
MSN | CAB39 |
Probably involved in connections of major cytoskeletalstructures to the plasma membrane. May inhibit herpes simplexvirus 1 infection at an early stage. Plays a role in regulatingthe proliferation, migration, and adhesion of human lymphoid cellsand participates in immunologic synapse formation(PubMed:27405666). {ECO:0000269|PubMed:21549406,ECO:0000269|PubMed:27405666}. | Component of a complex that binds and activatesSTK11/LKB1. In the complex, required to stabilize the interactionbetween CAB39/MO25 (CAB39/MO25alpha or CAB39L/MO25beta) andSTK11/LKB1. {ECO:0000269|PubMed:19892943}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for MSN_CAB39 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for MSN_CAB39 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for MSN_CAB39 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for MSN_CAB39 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | MSN | C0023893 | Liver Cirrhosis, Experimental | 1 | CTD_human |
Hgene | MSN | C0029408 | Degenerative polyarthritis | 1 | CTD_human |
Hgene | MSN | C0151744 | Myocardial Ischemia | 1 | CTD_human |
Hgene | MSN | C3495559 | Juvenile arthritis | 1 | CTD_human |