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Fusion gene ID: 22668 |
FusionGeneSummary for MSMO1_DDX60 |
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Fusion gene information | Fusion gene name: MSMO1_DDX60 | Fusion gene ID: 22668 | Hgene | Tgene | Gene symbol | MSMO1 | DDX60 | Gene ID | 6307 | 55601 |
Gene name | methylsterol monooxygenase 1 | DExD/H-box helicase 60 | |
Synonyms | DESP4|ERG25|MCCPD|SC4MOL | - | |
Cytomap | 4q32.3 | 4q32.3 | |
Type of gene | protein-coding | protein-coding | |
Description | methylsterol monooxygenase 1C-4 methylsterol oxidase | probable ATP-dependent RNA helicase DDX60DEAD (Asp-Glu-Ala-Asp) box polypeptide 60DEAD box protein 60DEAD-box helicase 60 | |
Modification date | 20180523 | 20180519 | |
UniProtAcc | Q15800 | Q8IY21 | |
Ensembl transtripts involved in fusion gene | ENST00000261507, ENST00000393766, ENST00000504317, | ENST00000393743, ENST00000505393, | |
Fusion gene scores | * DoF score | 2 X 1 X 2=4 | 2 X 2 X 1=4 |
# samples | 2 | 2 | |
** MAII score | log2(2/4*10)=2.32192809488736 | log2(2/4*10)=2.32192809488736 | |
Context | PubMed: MSMO1 [Title/Abstract] AND DDX60 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | DDX60 | GO:0009615 | response to virus | 21791617 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | BRCA | TCGA-BH-A0B2-01A | MSMO1 | chr4 | 166248916 | + | DDX60 | chr4 | 169143032 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5UTR-3CDS | ENST00000261507 | ENST00000393743 | MSMO1 | chr4 | 166248916 | + | DDX60 | chr4 | 169143032 | - |
5UTR-intron | ENST00000261507 | ENST00000505393 | MSMO1 | chr4 | 166248916 | + | DDX60 | chr4 | 169143032 | - |
5UTR-3CDS | ENST00000393766 | ENST00000393743 | MSMO1 | chr4 | 166248916 | + | DDX60 | chr4 | 169143032 | - |
5UTR-intron | ENST00000393766 | ENST00000505393 | MSMO1 | chr4 | 166248916 | + | DDX60 | chr4 | 169143032 | - |
5UTR-3CDS | ENST00000504317 | ENST00000393743 | MSMO1 | chr4 | 166248916 | + | DDX60 | chr4 | 169143032 | - |
5UTR-intron | ENST00000504317 | ENST00000505393 | MSMO1 | chr4 | 166248916 | + | DDX60 | chr4 | 169143032 | - |
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FusionProtFeatures for MSMO1_DDX60 |
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Hgene | Tgene |
MSMO1 | DDX60 |
Catalyzes the first step in the removal of the two C-4methyl groups of 4,4-dimethylzymosterol.{ECO:0000250|UniProtKB:P53045}. | Positively regulates DDX58/RIG-I- and IFIH1/MDA5-dependent type I interferon and interferon inducible geneexpression in response to viral infection. Binds ssRNA, dsRNA anddsDNA and can promote the binding of DDX58/RIG-I to dsRNA.Exhibits antiviral activity against hepatitis C virus andvesicular stomatitis virus (VSV). {ECO:0000269|PubMed:21478870,ECO:0000269|PubMed:21791617}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for MSMO1_DDX60 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for MSMO1_DDX60 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
MSMO1 | ELAVL1, ATXN1, EIF3F, PDHA2, EIF3A, DDRGK1, IMMT, VKORC1, GPR52, TMPRSS11B, C3AR1, P2RX5 | DDX60 | EGFR, SORT1, CDK2AP1, FYCO1, TES |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for MSMO1_DDX60 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for MSMO1_DDX60 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | MSMO1 | C4225189 | MICROCEPHALY, CONGENITAL CATARACT, AND PSORIASIFORM DERMATITIS | 1 | UNIPROT |
Tgene | DDX60 | C0021400 | Influenza | 1 | CTD_human |