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Fusion gene ID: 22606 |
FusionGeneSummary for MSH2_SLC3A1 |
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Fusion gene information | Fusion gene name: MSH2_SLC3A1 | Fusion gene ID: 22606 | Hgene | Tgene | Gene symbol | MSH2 | SLC3A1 | Gene ID | 4436 | 6519 |
Gene name | mutS homolog 2 | solute carrier family 3 member 1 | |
Synonyms | COCA1|FCC1|HNPCC|HNPCC1|LCFS2 | ATR1|CSNU1|D2H|NBAT|RBAT | |
Cytomap | 2p21-p16.3 | 2p21 | |
Type of gene | protein-coding | protein-coding | |
Description | DNA mismatch repair protein Msh2hMSH2mutS homolog 2, colon cancer, nonpolyposis type 1 | neutral and basic amino acid transport protein rBATB(0,+)-type amino acid transport proteinSLC3A1 variant BSLC3A1 variant CSLC3A1 variant DSLC3A1 variant ESLC3A1 variant FSLC3A1 variant Gamino acid transporter 1solute carrier family 3 (amino acid | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | P43246 | Q07837 | |
Ensembl transtripts involved in fusion gene | ENST00000233146, ENST00000543555, ENST00000406134, ENST00000461394, | ENST00000260649, ENST00000409387, ENST00000410056, ENST00000409741, ENST00000409229, ENST00000409380, ENST00000409294, ENST00000409740, | |
Fusion gene scores | * DoF score | 8 X 6 X 8=384 | 2 X 2 X 2=8 |
# samples | 10 | 2 | |
** MAII score | log2(10/384*10)=-1.94110631094643 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(2/8*10)=1.32192809488736 | |
Context | PubMed: MSH2 [Title/Abstract] AND SLC3A1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation | Tumor suppressor gene involved fusion gene, in-frame but not retained their domain. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | MSH2 | GO:0006281 | DNA repair | 8942985 |
Hgene | MSH2 | GO:0006298 | mismatch repair | 7923193|11555625 |
Hgene | MSH2 | GO:0006301 | postreplication repair | 7923193 |
Hgene | MSH2 | GO:0045910 | negative regulation of DNA recombination | 17715146 |
Hgene | MSH2 | GO:0051096 | positive regulation of helicase activity | 17715146 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | BRCA | TCGA-A2-A04U-01A | MSH2 | chr2 | 47637511 | + | SLC3A1 | chr2 | 44539725 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000233146 | ENST00000260649 | MSH2 | chr2 | 47637511 | + | SLC3A1 | chr2 | 44539725 | + |
In-frame | ENST00000233146 | ENST00000409387 | MSH2 | chr2 | 47637511 | + | SLC3A1 | chr2 | 44539725 | + |
5CDS-intron | ENST00000233146 | ENST00000410056 | MSH2 | chr2 | 47637511 | + | SLC3A1 | chr2 | 44539725 | + |
5CDS-intron | ENST00000233146 | ENST00000409741 | MSH2 | chr2 | 47637511 | + | SLC3A1 | chr2 | 44539725 | + |
5CDS-intron | ENST00000233146 | ENST00000409229 | MSH2 | chr2 | 47637511 | + | SLC3A1 | chr2 | 44539725 | + |
5CDS-intron | ENST00000233146 | ENST00000409380 | MSH2 | chr2 | 47637511 | + | SLC3A1 | chr2 | 44539725 | + |
5CDS-intron | ENST00000233146 | ENST00000409294 | MSH2 | chr2 | 47637511 | + | SLC3A1 | chr2 | 44539725 | + |
5CDS-intron | ENST00000233146 | ENST00000409740 | MSH2 | chr2 | 47637511 | + | SLC3A1 | chr2 | 44539725 | + |
In-frame | ENST00000543555 | ENST00000260649 | MSH2 | chr2 | 47637511 | + | SLC3A1 | chr2 | 44539725 | + |
In-frame | ENST00000543555 | ENST00000409387 | MSH2 | chr2 | 47637511 | + | SLC3A1 | chr2 | 44539725 | + |
5CDS-intron | ENST00000543555 | ENST00000410056 | MSH2 | chr2 | 47637511 | + | SLC3A1 | chr2 | 44539725 | + |
5CDS-intron | ENST00000543555 | ENST00000409741 | MSH2 | chr2 | 47637511 | + | SLC3A1 | chr2 | 44539725 | + |
5CDS-intron | ENST00000543555 | ENST00000409229 | MSH2 | chr2 | 47637511 | + | SLC3A1 | chr2 | 44539725 | + |
5CDS-intron | ENST00000543555 | ENST00000409380 | MSH2 | chr2 | 47637511 | + | SLC3A1 | chr2 | 44539725 | + |
5CDS-intron | ENST00000543555 | ENST00000409294 | MSH2 | chr2 | 47637511 | + | SLC3A1 | chr2 | 44539725 | + |
5CDS-intron | ENST00000543555 | ENST00000409740 | MSH2 | chr2 | 47637511 | + | SLC3A1 | chr2 | 44539725 | + |
In-frame | ENST00000406134 | ENST00000260649 | MSH2 | chr2 | 47637511 | + | SLC3A1 | chr2 | 44539725 | + |
In-frame | ENST00000406134 | ENST00000409387 | MSH2 | chr2 | 47637511 | + | SLC3A1 | chr2 | 44539725 | + |
5CDS-intron | ENST00000406134 | ENST00000410056 | MSH2 | chr2 | 47637511 | + | SLC3A1 | chr2 | 44539725 | + |
5CDS-intron | ENST00000406134 | ENST00000409741 | MSH2 | chr2 | 47637511 | + | SLC3A1 | chr2 | 44539725 | + |
5CDS-intron | ENST00000406134 | ENST00000409229 | MSH2 | chr2 | 47637511 | + | SLC3A1 | chr2 | 44539725 | + |
5CDS-intron | ENST00000406134 | ENST00000409380 | MSH2 | chr2 | 47637511 | + | SLC3A1 | chr2 | 44539725 | + |
5CDS-intron | ENST00000406134 | ENST00000409294 | MSH2 | chr2 | 47637511 | + | SLC3A1 | chr2 | 44539725 | + |
5CDS-intron | ENST00000406134 | ENST00000409740 | MSH2 | chr2 | 47637511 | + | SLC3A1 | chr2 | 44539725 | + |
intron-3CDS | ENST00000461394 | ENST00000260649 | MSH2 | chr2 | 47637511 | + | SLC3A1 | chr2 | 44539725 | + |
intron-3CDS | ENST00000461394 | ENST00000409387 | MSH2 | chr2 | 47637511 | + | SLC3A1 | chr2 | 44539725 | + |
intron-intron | ENST00000461394 | ENST00000410056 | MSH2 | chr2 | 47637511 | + | SLC3A1 | chr2 | 44539725 | + |
intron-intron | ENST00000461394 | ENST00000409741 | MSH2 | chr2 | 47637511 | + | SLC3A1 | chr2 | 44539725 | + |
intron-intron | ENST00000461394 | ENST00000409229 | MSH2 | chr2 | 47637511 | + | SLC3A1 | chr2 | 44539725 | + |
intron-intron | ENST00000461394 | ENST00000409380 | MSH2 | chr2 | 47637511 | + | SLC3A1 | chr2 | 44539725 | + |
intron-intron | ENST00000461394 | ENST00000409294 | MSH2 | chr2 | 47637511 | + | SLC3A1 | chr2 | 44539725 | + |
intron-intron | ENST00000461394 | ENST00000409740 | MSH2 | chr2 | 47637511 | + | SLC3A1 | chr2 | 44539725 | + |
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FusionProtFeatures for MSH2_SLC3A1 |
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Hgene | Tgene |
MSH2 | SLC3A1 |
Component of the post-replicative DNA mismatch repairsystem (MMR). Forms two different heterodimers: MutS alpha (MSH2-MSH6 heterodimer) and MutS beta (MSH2-MSH3 heterodimer) whichbinds to DNA mismatches thereby initiating DNA repair. When bound,heterodimers bend the DNA helix and shields approximately 20 basepairs. MutS alpha recognizes single base mismatches anddinucleotide insertion-deletion loops (IDL) in the DNA. MutS betarecognizes larger insertion-deletion loops up to 13 nucleotideslong. After mismatch binding, MutS alpha or beta forms a ternarycomplex with the MutL alpha heterodimer, which is thought to beresponsible for directing the downstream MMR events, includingstrand discrimination, excision, and resynthesis. ATP binding andhydrolysis play a pivotal role in mismatch repair functions. TheATPase activity associated with MutS alpha regulates bindingsimilar to a molecular switch: mismatched DNA provokes ADP-->ATPexchange, resulting in a discernible conformational transitionthat converts MutS alpha into a sliding clamp capable ofhydrolysis-independent diffusion along the DNA backbone. Thistransition is crucial for mismatch repair. MutS alpha may alsoplay a role in DNA homologous recombination repair. In melanocytesmay modulate both UV-B-induced cell cycle regulation andapoptosis. {ECO:0000269|PubMed:10078208,ECO:0000269|PubMed:10660545, ECO:0000269|PubMed:15064730,ECO:0000269|PubMed:17611581, ECO:0000269|PubMed:21120944,ECO:0000269|PubMed:9564049, ECO:0000269|PubMed:9822679,ECO:0000269|PubMed:9822680}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >MSH2 | chr2:47637511 | chr2:44539725 | ENST00000233146 | + | 3 | 16 | 669_676 | 215 | 935 | Nucleotide binding | ATP |
Hgene | >MSH2 | chr2:47637511 | chr2:44539725 | ENST00000543555 | + | 4 | 17 | 669_676 | 149 | 869 | Nucleotide binding | ATP |
Tgene | SLC3A1 | chr2:47637511 | chr2:44539725 | ENST00000260649 | + | 6 | 10 | 109_685 | 444 | 686 | Topological domain | Extracellular |
Tgene | SLC3A1 | chr2:47637511 | chr2:44539725 | ENST00000260649 | + | 6 | 10 | 1_87 | 444 | 686 | Topological domain | Cytoplasmic |
Tgene | SLC3A1 | chr2:47637511 | chr2:44539725 | ENST00000260649 | + | 6 | 10 | 88_108 | 444 | 686 | Transmembrane | Helical%3B Signal-anchor for type II membrane protein |
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FusionGeneSequence for MSH2_SLC3A1 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_MSH2_ENST00000233146_chr2_47637511_+_SLC3A1_ENST00000260649_chr2_44539725_+_457aa MAVQPKETLQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMGPAGAKNLQSVVLSKMNFESFVK DLLLVRQYRVEVYKNRAGNKASKENDWYLAYKASPGNLSQFEDILFGNNDMSASIGVVGVKMSAVDGQRQVGVGYVDSIQRKLGLCEFPD NDQFSNLEALLIQIGPKECVLPGGETAGDMGKLRQIGGPDSSRLTSRLGNQYVNVMNMLLFTLPGTPITYYGEEIGMGNIVAANLNESYD INTLRSKSPMQWDNSSNAGFSEASNTWLPTNSDYHTVNVDVQKTQPRSALKLYQDLSLLHANELLLNRGWFCHLRNDSHYVVYTRELDGI DRIFIVVLNFGESTLLNLHNMISGLPAKMRIRLSTNSADKGSKVDTSGIFLDKGEGLIFEHNTKNLLHRQTAFRDRCFVSNRACYSSVLN >In-frame_MSH2_ENST00000233146_chr2_47637511_+_SLC3A1_ENST00000409387_chr2_44539725_+_336aa MAVQPKETLQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMGPAGAKNLQSVVLSKMNFESFVK DLLLVRQYRVEVYKNRAGNKASKENDWYLAYKASPGNLSQFEDILFGNNDMSASIGVVGVKMSAVDGQRQVGVGYVDSIQRKLGLCEFPD NDQFSNLEALLIQIGPKECVLPGGETAGDMGKLRQIGGPDSSRLTSRLGNQYVNVMNMLLFTLPGTPITYYGEEIGMGNIVAANLNESYD >In-frame_MSH2_ENST00000543555_chr2_47637511_+_SLC3A1_ENST00000260649_chr2_44539725_+_391aa MGPAGAKNLQSVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGNKASKENDWYLAYKASPGNLSQFEDILFGNNDMSASIGVVGVKMSAVD GQRQVGVGYVDSIQRKLGLCEFPDNDQFSNLEALLIQIGPKECVLPGGETAGDMGKLRQIGGPDSSRLTSRLGNQYVNVMNMLLFTLPGT PITYYGEEIGMGNIVAANLNESYDINTLRSKSPMQWDNSSNAGFSEASNTWLPTNSDYHTVNVDVQKTQPRSALKLYQDLSLLHANELLL NRGWFCHLRNDSHYVVYTRELDGIDRIFIVVLNFGESTLLNLHNMISGLPAKMRIRLSTNSADKGSKVDTSGIFLDKGEGLIFEHNTKNL >In-frame_MSH2_ENST00000543555_chr2_47637511_+_SLC3A1_ENST00000409387_chr2_44539725_+_270aa MGPAGAKNLQSVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGNKASKENDWYLAYKASPGNLSQFEDILFGNNDMSASIGVVGVKMSAVD GQRQVGVGYVDSIQRKLGLCEFPDNDQFSNLEALLIQIGPKECVLPGGETAGDMGKLRQIGGPDSSRLTSRLGNQYVNVMNMLLFTLPGT PITYYGEEIGMGNIVAANLNESYDINTLRSKSPMQWDNSSNAGFSEASNTWLPTNSDYHTVNVDSCSVTHARVQWRDLGTLQPLLPGFKX >In-frame_MSH2_ENST00000406134_chr2_47637511_+_SLC3A1_ENST00000260649_chr2_44539725_+_457aa MAVQPKETLQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMGPAGAKNLQSVVLSKMNFESFVK DLLLVRQYRVEVYKNRAGNKASKENDWYLAYKASPGNLSQFEDILFGNNDMSASIGVVGVKMSAVDGQRQVGVGYVDSIQRKLGLCEFPD NDQFSNLEALLIQIGPKECVLPGGETAGDMGKLRQIGGPDSSRLTSRLGNQYVNVMNMLLFTLPGTPITYYGEEIGMGNIVAANLNESYD INTLRSKSPMQWDNSSNAGFSEASNTWLPTNSDYHTVNVDVQKTQPRSALKLYQDLSLLHANELLLNRGWFCHLRNDSHYVVYTRELDGI DRIFIVVLNFGESTLLNLHNMISGLPAKMRIRLSTNSADKGSKVDTSGIFLDKGEGLIFEHNTKNLLHRQTAFRDRCFVSNRACYSSVLN >In-frame_MSH2_ENST00000406134_chr2_47637511_+_SLC3A1_ENST00000409387_chr2_44539725_+_336aa MAVQPKETLQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMGPAGAKNLQSVVLSKMNFESFVK DLLLVRQYRVEVYKNRAGNKASKENDWYLAYKASPGNLSQFEDILFGNNDMSASIGVVGVKMSAVDGQRQVGVGYVDSIQRKLGLCEFPD NDQFSNLEALLIQIGPKECVLPGGETAGDMGKLRQIGGPDSSRLTSRLGNQYVNVMNMLLFTLPGTPITYYGEEIGMGNIVAANLNESYD |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_MSH2_ENST00000233146_chr2_47637511_+_SLC3A1_ENST00000260649_chr2_44539725_+_1371nt ATGGCGGTGCAGCCGAAGGAGACGCTGCAGTTGGAGAGCGCGGCCGAGGTCGGCTTCGTGCGCTTCTTTCAGGGCATGCCGGAGAAGCCG ACCACCACAGTGCGCCTTTTCGACCGGGGCGACTTCTATACGGCGCACGGCGAGGACGCGCTGCTGGCCGCCCGGGAGGTGTTCAAGACC CAGGGGGTGATCAAGTACATGGGGCCGGCAGGAGCAAAGAATCTGCAGAGTGTTGTGCTTAGTAAAATGAATTTTGAATCTTTTGTAAAA GATCTTCTTCTGGTTCGTCAGTATAGAGTTGAAGTTTATAAGAATAGAGCTGGAAATAAGGCATCCAAGGAGAATGATTGGTATTTGGCA TATAAGGCTTCTCCTGGCAATCTCTCTCAGTTTGAAGACATTCTCTTTGGTAACAATGATATGTCAGCTTCCATTGGTGTTGTGGGTGTT AAAATGTCCGCAGTTGATGGCCAGAGACAGGTTGGAGTTGGGTATGTGGATTCCATACAGAGGAAACTAGGACTGTGTGAATTCCCTGAT AATGATCAGTTCTCCAATCTTGAGGCTCTCCTCATCCAGATTGGACCAAAGGAATGTGTTTTACCCGGAGGAGAGACTGCTGGAGACATG GGGAAACTGAGACAGATTGGTGGACCAGACAGTTCACGGCTGACTTCGCGTTTGGGGAATCAGTATGTCAACGTGATGAACATGCTTCTT TTCACACTCCCTGGAACTCCTATAACTTACTATGGAGAAGAAATTGGAATGGGAAATATTGTAGCCGCAAATCTCAATGAAAGCTATGAT ATTAATACCCTTCGCTCAAAGTCACCAATGCAGTGGGACAATAGTTCAAATGCTGGTTTTTCTGAAGCTAGTAACACCTGGTTACCTACC AATTCAGATTACCACACTGTGAATGTTGATGTCCAAAAGACTCAGCCCAGATCGGCTTTGAAGTTATATCAAGATTTAAGTCTACTTCAT GCCAATGAGCTACTCCTCAACAGGGGCTGGTTTTGCCATTTGAGGAATGACAGCCACTATGTTGTGTACACAAGAGAGCTGGATGGCATC GACAGAATCTTTATCGTGGTTCTGAATTTTGGAGAATCAACACTGTTAAATCTACATAATATGATTTCGGGCCTTCCCGCTAAAATGAGA ATAAGGTTAAGTACCAATTCTGCCGACAAAGGCAGTAAAGTTGATACAAGTGGCATTTTTCTGGACAAGGGAGAGGGACTCATCTTTGAA CACAACACGAAGAATCTCCTTCATCGCCAAACAGCTTTCAGAGATAGATGCTTTGTTTCCAATCGAGCATGCTATTCCAGTGTACTGAAC >In-frame_MSH2_ENST00000233146_chr2_47637511_+_SLC3A1_ENST00000409387_chr2_44539725_+_1008nt ATGGCGGTGCAGCCGAAGGAGACGCTGCAGTTGGAGAGCGCGGCCGAGGTCGGCTTCGTGCGCTTCTTTCAGGGCATGCCGGAGAAGCCG ACCACCACAGTGCGCCTTTTCGACCGGGGCGACTTCTATACGGCGCACGGCGAGGACGCGCTGCTGGCCGCCCGGGAGGTGTTCAAGACC CAGGGGGTGATCAAGTACATGGGGCCGGCAGGAGCAAAGAATCTGCAGAGTGTTGTGCTTAGTAAAATGAATTTTGAATCTTTTGTAAAA GATCTTCTTCTGGTTCGTCAGTATAGAGTTGAAGTTTATAAGAATAGAGCTGGAAATAAGGCATCCAAGGAGAATGATTGGTATTTGGCA TATAAGGCTTCTCCTGGCAATCTCTCTCAGTTTGAAGACATTCTCTTTGGTAACAATGATATGTCAGCTTCCATTGGTGTTGTGGGTGTT AAAATGTCCGCAGTTGATGGCCAGAGACAGGTTGGAGTTGGGTATGTGGATTCCATACAGAGGAAACTAGGACTGTGTGAATTCCCTGAT AATGATCAGTTCTCCAATCTTGAGGCTCTCCTCATCCAGATTGGACCAAAGGAATGTGTTTTACCCGGAGGAGAGACTGCTGGAGACATG GGGAAACTGAGACAGATTGGTGGACCAGACAGTTCACGGCTGACTTCGCGTTTGGGGAATCAGTATGTCAACGTGATGAACATGCTTCTT TTCACACTCCCTGGAACTCCTATAACTTACTATGGAGAAGAAATTGGAATGGGAAATATTGTAGCCGCAAATCTCAATGAAAGCTATGAT ATTAATACCCTTCGCTCAAAGTCACCAATGCAGTGGGACAATAGTTCAAATGCTGGTTTTTCTGAAGCTAGTAACACCTGGTTACCTACC AATTCAGATTACCACACTGTGAATGTTGATTCTTGCTCCGTCACCCATGCTCGAGTGCAGTGGCGTGATCTCGGCACACTGCAGCCTCTG >In-frame_MSH2_ENST00000543555_chr2_47637511_+_SLC3A1_ENST00000260649_chr2_44539725_+_1173nt ATGGGGCCGGCAGGAGCAAAGAATCTGCAGAGTGTTGTGCTTAGTAAAATGAATTTTGAATCTTTTGTAAAAGATCTTCTTCTGGTTCGT CAGTATAGAGTTGAAGTTTATAAGAATAGAGCTGGAAATAAGGCATCCAAGGAGAATGATTGGTATTTGGCATATAAGGCTTCTCCTGGC AATCTCTCTCAGTTTGAAGACATTCTCTTTGGTAACAATGATATGTCAGCTTCCATTGGTGTTGTGGGTGTTAAAATGTCCGCAGTTGAT GGCCAGAGACAGGTTGGAGTTGGGTATGTGGATTCCATACAGAGGAAACTAGGACTGTGTGAATTCCCTGATAATGATCAGTTCTCCAAT CTTGAGGCTCTCCTCATCCAGATTGGACCAAAGGAATGTGTTTTACCCGGAGGAGAGACTGCTGGAGACATGGGGAAACTGAGACAGATT GGTGGACCAGACAGTTCACGGCTGACTTCGCGTTTGGGGAATCAGTATGTCAACGTGATGAACATGCTTCTTTTCACACTCCCTGGAACT CCTATAACTTACTATGGAGAAGAAATTGGAATGGGAAATATTGTAGCCGCAAATCTCAATGAAAGCTATGATATTAATACCCTTCGCTCA AAGTCACCAATGCAGTGGGACAATAGTTCAAATGCTGGTTTTTCTGAAGCTAGTAACACCTGGTTACCTACCAATTCAGATTACCACACT GTGAATGTTGATGTCCAAAAGACTCAGCCCAGATCGGCTTTGAAGTTATATCAAGATTTAAGTCTACTTCATGCCAATGAGCTACTCCTC AACAGGGGCTGGTTTTGCCATTTGAGGAATGACAGCCACTATGTTGTGTACACAAGAGAGCTGGATGGCATCGACAGAATCTTTATCGTG GTTCTGAATTTTGGAGAATCAACACTGTTAAATCTACATAATATGATTTCGGGCCTTCCCGCTAAAATGAGAATAAGGTTAAGTACCAAT TCTGCCGACAAAGGCAGTAAAGTTGATACAAGTGGCATTTTTCTGGACAAGGGAGAGGGACTCATCTTTGAACACAACACGAAGAATCTC CTTCATCGCCAAACAGCTTTCAGAGATAGATGCTTTGTTTCCAATCGAGCATGCTATTCCAGTGTACTGAACATACTGTATACCTCGTGT >In-frame_MSH2_ENST00000543555_chr2_47637511_+_SLC3A1_ENST00000409387_chr2_44539725_+_810nt ATGGGGCCGGCAGGAGCAAAGAATCTGCAGAGTGTTGTGCTTAGTAAAATGAATTTTGAATCTTTTGTAAAAGATCTTCTTCTGGTTCGT CAGTATAGAGTTGAAGTTTATAAGAATAGAGCTGGAAATAAGGCATCCAAGGAGAATGATTGGTATTTGGCATATAAGGCTTCTCCTGGC AATCTCTCTCAGTTTGAAGACATTCTCTTTGGTAACAATGATATGTCAGCTTCCATTGGTGTTGTGGGTGTTAAAATGTCCGCAGTTGAT GGCCAGAGACAGGTTGGAGTTGGGTATGTGGATTCCATACAGAGGAAACTAGGACTGTGTGAATTCCCTGATAATGATCAGTTCTCCAAT CTTGAGGCTCTCCTCATCCAGATTGGACCAAAGGAATGTGTTTTACCCGGAGGAGAGACTGCTGGAGACATGGGGAAACTGAGACAGATT GGTGGACCAGACAGTTCACGGCTGACTTCGCGTTTGGGGAATCAGTATGTCAACGTGATGAACATGCTTCTTTTCACACTCCCTGGAACT CCTATAACTTACTATGGAGAAGAAATTGGAATGGGAAATATTGTAGCCGCAAATCTCAATGAAAGCTATGATATTAATACCCTTCGCTCA AAGTCACCAATGCAGTGGGACAATAGTTCAAATGCTGGTTTTTCTGAAGCTAGTAACACCTGGTTACCTACCAATTCAGATTACCACACT GTGAATGTTGATTCTTGCTCCGTCACCCATGCTCGAGTGCAGTGGCGTGATCTCGGCACACTGCAGCCTCTGCTTCCTGGGTTCAAGTGA >In-frame_MSH2_ENST00000406134_chr2_47637511_+_SLC3A1_ENST00000260649_chr2_44539725_+_1371nt ATGGCGGTGCAGCCGAAGGAGACGCTGCAGTTGGAGAGCGCGGCCGAGGTCGGCTTCGTGCGCTTCTTTCAGGGCATGCCGGAGAAGCCG ACCACCACAGTGCGCCTTTTCGACCGGGGCGACTTCTATACGGCGCACGGCGAGGACGCGCTGCTGGCCGCCCGGGAGGTGTTCAAGACC CAGGGGGTGATCAAGTACATGGGGCCGGCAGGAGCAAAGAATCTGCAGAGTGTTGTGCTTAGTAAAATGAATTTTGAATCTTTTGTAAAA GATCTTCTTCTGGTTCGTCAGTATAGAGTTGAAGTTTATAAGAATAGAGCTGGAAATAAGGCATCCAAGGAGAATGATTGGTATTTGGCA TATAAGGCTTCTCCTGGCAATCTCTCTCAGTTTGAAGACATTCTCTTTGGTAACAATGATATGTCAGCTTCCATTGGTGTTGTGGGTGTT AAAATGTCCGCAGTTGATGGCCAGAGACAGGTTGGAGTTGGGTATGTGGATTCCATACAGAGGAAACTAGGACTGTGTGAATTCCCTGAT AATGATCAGTTCTCCAATCTTGAGGCTCTCCTCATCCAGATTGGACCAAAGGAATGTGTTTTACCCGGAGGAGAGACTGCTGGAGACATG GGGAAACTGAGACAGATTGGTGGACCAGACAGTTCACGGCTGACTTCGCGTTTGGGGAATCAGTATGTCAACGTGATGAACATGCTTCTT TTCACACTCCCTGGAACTCCTATAACTTACTATGGAGAAGAAATTGGAATGGGAAATATTGTAGCCGCAAATCTCAATGAAAGCTATGAT ATTAATACCCTTCGCTCAAAGTCACCAATGCAGTGGGACAATAGTTCAAATGCTGGTTTTTCTGAAGCTAGTAACACCTGGTTACCTACC AATTCAGATTACCACACTGTGAATGTTGATGTCCAAAAGACTCAGCCCAGATCGGCTTTGAAGTTATATCAAGATTTAAGTCTACTTCAT GCCAATGAGCTACTCCTCAACAGGGGCTGGTTTTGCCATTTGAGGAATGACAGCCACTATGTTGTGTACACAAGAGAGCTGGATGGCATC GACAGAATCTTTATCGTGGTTCTGAATTTTGGAGAATCAACACTGTTAAATCTACATAATATGATTTCGGGCCTTCCCGCTAAAATGAGA ATAAGGTTAAGTACCAATTCTGCCGACAAAGGCAGTAAAGTTGATACAAGTGGCATTTTTCTGGACAAGGGAGAGGGACTCATCTTTGAA CACAACACGAAGAATCTCCTTCATCGCCAAACAGCTTTCAGAGATAGATGCTTTGTTTCCAATCGAGCATGCTATTCCAGTGTACTGAAC >In-frame_MSH2_ENST00000406134_chr2_47637511_+_SLC3A1_ENST00000409387_chr2_44539725_+_1008nt ATGGCGGTGCAGCCGAAGGAGACGCTGCAGTTGGAGAGCGCGGCCGAGGTCGGCTTCGTGCGCTTCTTTCAGGGCATGCCGGAGAAGCCG ACCACCACAGTGCGCCTTTTCGACCGGGGCGACTTCTATACGGCGCACGGCGAGGACGCGCTGCTGGCCGCCCGGGAGGTGTTCAAGACC CAGGGGGTGATCAAGTACATGGGGCCGGCAGGAGCAAAGAATCTGCAGAGTGTTGTGCTTAGTAAAATGAATTTTGAATCTTTTGTAAAA GATCTTCTTCTGGTTCGTCAGTATAGAGTTGAAGTTTATAAGAATAGAGCTGGAAATAAGGCATCCAAGGAGAATGATTGGTATTTGGCA TATAAGGCTTCTCCTGGCAATCTCTCTCAGTTTGAAGACATTCTCTTTGGTAACAATGATATGTCAGCTTCCATTGGTGTTGTGGGTGTT AAAATGTCCGCAGTTGATGGCCAGAGACAGGTTGGAGTTGGGTATGTGGATTCCATACAGAGGAAACTAGGACTGTGTGAATTCCCTGAT AATGATCAGTTCTCCAATCTTGAGGCTCTCCTCATCCAGATTGGACCAAAGGAATGTGTTTTACCCGGAGGAGAGACTGCTGGAGACATG GGGAAACTGAGACAGATTGGTGGACCAGACAGTTCACGGCTGACTTCGCGTTTGGGGAATCAGTATGTCAACGTGATGAACATGCTTCTT TTCACACTCCCTGGAACTCCTATAACTTACTATGGAGAAGAAATTGGAATGGGAAATATTGTAGCCGCAAATCTCAATGAAAGCTATGAT ATTAATACCCTTCGCTCAAAGTCACCAATGCAGTGGGACAATAGTTCAAATGCTGGTTTTTCTGAAGCTAGTAACACCTGGTTACCTACC AATTCAGATTACCACACTGTGAATGTTGATTCTTGCTCCGTCACCCATGCTCGAGTGCAGTGGCGTGATCTCGGCACACTGCAGCCTCTG |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_MSH2_ENST00000233146_chr2_47637511_+_SLC3A1_ENST00000260649_chr2_44539725_+_2449nt GCAGTAGCTAAAGTCACCAGCGTGCGCGGGAAGCTGGGCCGCGTCTGCTTATGATTGGTTGCCGCGGCAGACTCCCACCCACCGAAACGC AGCCCTGGAAGCTGATTGGGTGTGGTCGCCGTGGCCGGACGCCGCTCGGGGGACGTGGGAGGGGAGGCGGGAAACAGCTTAGTGGGTGTG GGGTCGCGCATTTTCTTCAACCAGGAGGTGAGGAGGTTTCGACATGGCGGTGCAGCCGAAGGAGACGCTGCAGTTGGAGAGCGCGGCCGA GGTCGGCTTCGTGCGCTTCTTTCAGGGCATGCCGGAGAAGCCGACCACCACAGTGCGCCTTTTCGACCGGGGCGACTTCTATACGGCGCA CGGCGAGGACGCGCTGCTGGCCGCCCGGGAGGTGTTCAAGACCCAGGGGGTGATCAAGTACATGGGGCCGGCAGGAGCAAAGAATCTGCA GAGTGTTGTGCTTAGTAAAATGAATTTTGAATCTTTTGTAAAAGATCTTCTTCTGGTTCGTCAGTATAGAGTTGAAGTTTATAAGAATAG AGCTGGAAATAAGGCATCCAAGGAGAATGATTGGTATTTGGCATATAAGGCTTCTCCTGGCAATCTCTCTCAGTTTGAAGACATTCTCTT TGGTAACAATGATATGTCAGCTTCCATTGGTGTTGTGGGTGTTAAAATGTCCGCAGTTGATGGCCAGAGACAGGTTGGAGTTGGGTATGT GGATTCCATACAGAGGAAACTAGGACTGTGTGAATTCCCTGATAATGATCAGTTCTCCAATCTTGAGGCTCTCCTCATCCAGATTGGACC AAAGGAATGTGTTTTACCCGGAGGAGAGACTGCTGGAGACATGGGGAAACTGAGACAGATTGGTGGACCAGACAGTTCACGGCTGACTTC GCGTTTGGGGAATCAGTATGTCAACGTGATGAACATGCTTCTTTTCACACTCCCTGGAACTCCTATAACTTACTATGGAGAAGAAATTGG AATGGGAAATATTGTAGCCGCAAATCTCAATGAAAGCTATGATATTAATACCCTTCGCTCAAAGTCACCAATGCAGTGGGACAATAGTTC AAATGCTGGTTTTTCTGAAGCTAGTAACACCTGGTTACCTACCAATTCAGATTACCACACTGTGAATGTTGATGTCCAAAAGACTCAGCC CAGATCGGCTTTGAAGTTATATCAAGATTTAAGTCTACTTCATGCCAATGAGCTACTCCTCAACAGGGGCTGGTTTTGCCATTTGAGGAA TGACAGCCACTATGTTGTGTACACAAGAGAGCTGGATGGCATCGACAGAATCTTTATCGTGGTTCTGAATTTTGGAGAATCAACACTGTT AAATCTACATAATATGATTTCGGGCCTTCCCGCTAAAATGAGAATAAGGTTAAGTACCAATTCTGCCGACAAAGGCAGTAAAGTTGATAC AAGTGGCATTTTTCTGGACAAGGGAGAGGGACTCATCTTTGAACACAACACGAAGAATCTCCTTCATCGCCAAACAGCTTTCAGAGATAG ATGCTTTGTTTCCAATCGAGCATGCTATTCCAGTGTACTGAACATACTGTATACCTCGTGTTAGGCACCTTTATGAAGAGATGAAGACAC TGGCATTTCAGTGGGATTGTAAGCATTTGTAATAGCTTCATGTACAGCATGCTGCTTGGTGAACAATCATTAATTCTTCGATATTTCTGT AGCTTGAATGTAACTGCTTTAAGAAAGGTTCTCAAATGTTTTGAAAAAAATAAAATGTTTAAAAGTAAATTATGGCTTATAGGAGCTTAT AACTTTATTCAGATAGCATCAATCAGGGATGACCAGAACACATTAGGACCCCAGATTATTCAAAAACTTTAACGAATTTTAAGGGGAAGA ATTTTATCTTTTCCCTTAAAATGCAGTCATAGAAATTAGAGGATGACTCACTGCCACAGTGTCTAAAAGCATTTGCTAGCAAAGAGGCAG GACACTAATTTGTAAACTGCTCAACTGTTCTGACTGGAAGGGAGGCCTGGAGCTCTGCTATCACCAATCCTTCCCTTCCCTCTACTCCAC ATCCTTCTAAGGAGCATGATTTGAAAATTACTTTCCTAGGTTAATGGGCATGTGCATCAATGGAGAGAATAGTATAAGCAAGTGAGATGT AGACTAAGCAAAATTTAGATGGAGAAGCACATTTTAAAAAATTAATAACTTAAAAGTCTCAAGTTATTAATTTTTTTTTTGCTAACTCAA TTGGAAGTAAGACTATGAAATATTTCAGTGTGTTTCCAATTCCCAGTTGAATGCAGTGTTTCAGAATTTCAGGTATTTCTTAAGATCCTC GAAAACACTGGTGCTGTCAAGTCCAAGTTCCTCGTACAGGAATTTAATTTGGGCTGTAATCTAAAAGAAACACATTAAAAAAATTAAATA >In-frame_MSH2_ENST00000233146_chr2_47637511_+_SLC3A1_ENST00000409387_chr2_44539725_+_1791nt GCAGTAGCTAAAGTCACCAGCGTGCGCGGGAAGCTGGGCCGCGTCTGCTTATGATTGGTTGCCGCGGCAGACTCCCACCCACCGAAACGC AGCCCTGGAAGCTGATTGGGTGTGGTCGCCGTGGCCGGACGCCGCTCGGGGGACGTGGGAGGGGAGGCGGGAAACAGCTTAGTGGGTGTG GGGTCGCGCATTTTCTTCAACCAGGAGGTGAGGAGGTTTCGACATGGCGGTGCAGCCGAAGGAGACGCTGCAGTTGGAGAGCGCGGCCGA GGTCGGCTTCGTGCGCTTCTTTCAGGGCATGCCGGAGAAGCCGACCACCACAGTGCGCCTTTTCGACCGGGGCGACTTCTATACGGCGCA CGGCGAGGACGCGCTGCTGGCCGCCCGGGAGGTGTTCAAGACCCAGGGGGTGATCAAGTACATGGGGCCGGCAGGAGCAAAGAATCTGCA GAGTGTTGTGCTTAGTAAAATGAATTTTGAATCTTTTGTAAAAGATCTTCTTCTGGTTCGTCAGTATAGAGTTGAAGTTTATAAGAATAG AGCTGGAAATAAGGCATCCAAGGAGAATGATTGGTATTTGGCATATAAGGCTTCTCCTGGCAATCTCTCTCAGTTTGAAGACATTCTCTT TGGTAACAATGATATGTCAGCTTCCATTGGTGTTGTGGGTGTTAAAATGTCCGCAGTTGATGGCCAGAGACAGGTTGGAGTTGGGTATGT GGATTCCATACAGAGGAAACTAGGACTGTGTGAATTCCCTGATAATGATCAGTTCTCCAATCTTGAGGCTCTCCTCATCCAGATTGGACC AAAGGAATGTGTTTTACCCGGAGGAGAGACTGCTGGAGACATGGGGAAACTGAGACAGATTGGTGGACCAGACAGTTCACGGCTGACTTC GCGTTTGGGGAATCAGTATGTCAACGTGATGAACATGCTTCTTTTCACACTCCCTGGAACTCCTATAACTTACTATGGAGAAGAAATTGG AATGGGAAATATTGTAGCCGCAAATCTCAATGAAAGCTATGATATTAATACCCTTCGCTCAAAGTCACCAATGCAGTGGGACAATAGTTC AAATGCTGGTTTTTCTGAAGCTAGTAACACCTGGTTACCTACCAATTCAGATTACCACACTGTGAATGTTGATTCTTGCTCCGTCACCCA TGCTCGAGTGCAGTGGCGTGATCTCGGCACACTGCAGCCTCTGCTTCCTGGGTTCAAGTGATTCTCCTGCTGCAGCCTCCCAAGTAGCTG GGATTACAGGTGCACGTCATTATGCCCGGGTAATTTCTGTATTTTTTAGTAGAGATGGTGTTTCACCATGTTGGCCAGGCTGGTCTTGAA CTCCTGACCTCTGGTGATCTGTCTGCCTTGCCTCCCAAAGTGCTAGGATTACGGGCCTGAGCCACCTTGCCTGGCCTGCAAAATTTGTTT TTAATAGAAGACACAAGAAATGATTTAAATATTTTATCAACAGAAAACCAGTTCTATCAACTATGGGCCCAGTATGCAGCTTTTAAAAAT GACAGTTCTATATACATTGATATGAGACCATTTCAAACAGGTATTCAATAAAGTATAGAATGGTAACATATCACCAACTGTGTAAAGAAA AATATATAAACATATGAAATGATACATTCTGTGCCTATGCAAACATATGATACATTAAAAACAAAAGAACATATAGTGCCTGTCTCTGAG >In-frame_MSH2_ENST00000543555_chr2_47637511_+_SLC3A1_ENST00000260649_chr2_44539725_+_2167nt AAGCTGATTGGGTGTGGTCGCCGTGGCCGGACGCCGCTCGGGGGACGTGGGAGGGGAGGCGGGAAACAGCTTAGTGGGTGTGGGGTCGCG CATTTTCTTCAACCAGGAGGTGTTCAAGACCCAGGGGGTGATCAAGTACATGGGGCCGGCAGGAGCAAAGAATCTGCAGAGTGTTGTGCT TAGTAAAATGAATTTTGAATCTTTTGTAAAAGATCTTCTTCTGGTTCGTCAGTATAGAGTTGAAGTTTATAAGAATAGAGCTGGAAATAA GGCATCCAAGGAGAATGATTGGTATTTGGCATATAAGGCTTCTCCTGGCAATCTCTCTCAGTTTGAAGACATTCTCTTTGGTAACAATGA TATGTCAGCTTCCATTGGTGTTGTGGGTGTTAAAATGTCCGCAGTTGATGGCCAGAGACAGGTTGGAGTTGGGTATGTGGATTCCATACA GAGGAAACTAGGACTGTGTGAATTCCCTGATAATGATCAGTTCTCCAATCTTGAGGCTCTCCTCATCCAGATTGGACCAAAGGAATGTGT TTTACCCGGAGGAGAGACTGCTGGAGACATGGGGAAACTGAGACAGATTGGTGGACCAGACAGTTCACGGCTGACTTCGCGTTTGGGGAA TCAGTATGTCAACGTGATGAACATGCTTCTTTTCACACTCCCTGGAACTCCTATAACTTACTATGGAGAAGAAATTGGAATGGGAAATAT TGTAGCCGCAAATCTCAATGAAAGCTATGATATTAATACCCTTCGCTCAAAGTCACCAATGCAGTGGGACAATAGTTCAAATGCTGGTTT TTCTGAAGCTAGTAACACCTGGTTACCTACCAATTCAGATTACCACACTGTGAATGTTGATGTCCAAAAGACTCAGCCCAGATCGGCTTT GAAGTTATATCAAGATTTAAGTCTACTTCATGCCAATGAGCTACTCCTCAACAGGGGCTGGTTTTGCCATTTGAGGAATGACAGCCACTA TGTTGTGTACACAAGAGAGCTGGATGGCATCGACAGAATCTTTATCGTGGTTCTGAATTTTGGAGAATCAACACTGTTAAATCTACATAA TATGATTTCGGGCCTTCCCGCTAAAATGAGAATAAGGTTAAGTACCAATTCTGCCGACAAAGGCAGTAAAGTTGATACAAGTGGCATTTT TCTGGACAAGGGAGAGGGACTCATCTTTGAACACAACACGAAGAATCTCCTTCATCGCCAAACAGCTTTCAGAGATAGATGCTTTGTTTC CAATCGAGCATGCTATTCCAGTGTACTGAACATACTGTATACCTCGTGTTAGGCACCTTTATGAAGAGATGAAGACACTGGCATTTCAGT GGGATTGTAAGCATTTGTAATAGCTTCATGTACAGCATGCTGCTTGGTGAACAATCATTAATTCTTCGATATTTCTGTAGCTTGAATGTA ACTGCTTTAAGAAAGGTTCTCAAATGTTTTGAAAAAAATAAAATGTTTAAAAGTAAATTATGGCTTATAGGAGCTTATAACTTTATTCAG ATAGCATCAATCAGGGATGACCAGAACACATTAGGACCCCAGATTATTCAAAAACTTTAACGAATTTTAAGGGGAAGAATTTTATCTTTT CCCTTAAAATGCAGTCATAGAAATTAGAGGATGACTCACTGCCACAGTGTCTAAAAGCATTTGCTAGCAAAGAGGCAGGACACTAATTTG TAAACTGCTCAACTGTTCTGACTGGAAGGGAGGCCTGGAGCTCTGCTATCACCAATCCTTCCCTTCCCTCTACTCCACATCCTTCTAAGG AGCATGATTTGAAAATTACTTTCCTAGGTTAATGGGCATGTGCATCAATGGAGAGAATAGTATAAGCAAGTGAGATGTAGACTAAGCAAA ATTTAGATGGAGAAGCACATTTTAAAAAATTAATAACTTAAAAGTCTCAAGTTATTAATTTTTTTTTTGCTAACTCAATTGGAAGTAAGA CTATGAAATATTTCAGTGTGTTTCCAATTCCCAGTTGAATGCAGTGTTTCAGAATTTCAGGTATTTCTTAAGATCCTCGAAAACACTGGT GCTGTCAAGTCCAAGTTCCTCGTACAGGAATTTAATTTGGGCTGTAATCTAAAAGAAACACATTAAAAAAATTAAATAGAAGGCCTTTGT >In-frame_MSH2_ENST00000543555_chr2_47637511_+_SLC3A1_ENST00000409387_chr2_44539725_+_1509nt AAGCTGATTGGGTGTGGTCGCCGTGGCCGGACGCCGCTCGGGGGACGTGGGAGGGGAGGCGGGAAACAGCTTAGTGGGTGTGGGGTCGCG CATTTTCTTCAACCAGGAGGTGTTCAAGACCCAGGGGGTGATCAAGTACATGGGGCCGGCAGGAGCAAAGAATCTGCAGAGTGTTGTGCT TAGTAAAATGAATTTTGAATCTTTTGTAAAAGATCTTCTTCTGGTTCGTCAGTATAGAGTTGAAGTTTATAAGAATAGAGCTGGAAATAA GGCATCCAAGGAGAATGATTGGTATTTGGCATATAAGGCTTCTCCTGGCAATCTCTCTCAGTTTGAAGACATTCTCTTTGGTAACAATGA TATGTCAGCTTCCATTGGTGTTGTGGGTGTTAAAATGTCCGCAGTTGATGGCCAGAGACAGGTTGGAGTTGGGTATGTGGATTCCATACA GAGGAAACTAGGACTGTGTGAATTCCCTGATAATGATCAGTTCTCCAATCTTGAGGCTCTCCTCATCCAGATTGGACCAAAGGAATGTGT TTTACCCGGAGGAGAGACTGCTGGAGACATGGGGAAACTGAGACAGATTGGTGGACCAGACAGTTCACGGCTGACTTCGCGTTTGGGGAA TCAGTATGTCAACGTGATGAACATGCTTCTTTTCACACTCCCTGGAACTCCTATAACTTACTATGGAGAAGAAATTGGAATGGGAAATAT TGTAGCCGCAAATCTCAATGAAAGCTATGATATTAATACCCTTCGCTCAAAGTCACCAATGCAGTGGGACAATAGTTCAAATGCTGGTTT TTCTGAAGCTAGTAACACCTGGTTACCTACCAATTCAGATTACCACACTGTGAATGTTGATTCTTGCTCCGTCACCCATGCTCGAGTGCA GTGGCGTGATCTCGGCACACTGCAGCCTCTGCTTCCTGGGTTCAAGTGATTCTCCTGCTGCAGCCTCCCAAGTAGCTGGGATTACAGGTG CACGTCATTATGCCCGGGTAATTTCTGTATTTTTTAGTAGAGATGGTGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCT GGTGATCTGTCTGCCTTGCCTCCCAAAGTGCTAGGATTACGGGCCTGAGCCACCTTGCCTGGCCTGCAAAATTTGTTTTTAATAGAAGAC ACAAGAAATGATTTAAATATTTTATCAACAGAAAACCAGTTCTATCAACTATGGGCCCAGTATGCAGCTTTTAAAAATGACAGTTCTATA TACATTGATATGAGACCATTTCAAACAGGTATTCAATAAAGTATAGAATGGTAACATATCACCAACTGTGTAAAGAAAAATATATAAACA TATGAAATGATACATTCTGTGCCTATGCAAACATATGATACATTAAAAACAAAAGAACATATAGTGCCTGTCTCTGAGGGGAACTGTGAA >In-frame_MSH2_ENST00000406134_chr2_47637511_+_SLC3A1_ENST00000260649_chr2_44539725_+_2288nt AAACAGCTTAGTGGGTGTGGGGTCGCGCATTTTCTTCAACCAGGAGGTGAGGAGGTTTCGACATGGCGGTGCAGCCGAAGGAGACGCTGC AGTTGGAGAGCGCGGCCGAGGTCGGCTTCGTGCGCTTCTTTCAGGGCATGCCGGAGAAGCCGACCACCACAGTGCGCCTTTTCGACCGGG GCGACTTCTATACGGCGCACGGCGAGGACGCGCTGCTGGCCGCCCGGGAGGTGTTCAAGACCCAGGGGGTGATCAAGTACATGGGGCCGG CAGGAGCAAAGAATCTGCAGAGTGTTGTGCTTAGTAAAATGAATTTTGAATCTTTTGTAAAAGATCTTCTTCTGGTTCGTCAGTATAGAG TTGAAGTTTATAAGAATAGAGCTGGAAATAAGGCATCCAAGGAGAATGATTGGTATTTGGCATATAAGGCTTCTCCTGGCAATCTCTCTC AGTTTGAAGACATTCTCTTTGGTAACAATGATATGTCAGCTTCCATTGGTGTTGTGGGTGTTAAAATGTCCGCAGTTGATGGCCAGAGAC AGGTTGGAGTTGGGTATGTGGATTCCATACAGAGGAAACTAGGACTGTGTGAATTCCCTGATAATGATCAGTTCTCCAATCTTGAGGCTC TCCTCATCCAGATTGGACCAAAGGAATGTGTTTTACCCGGAGGAGAGACTGCTGGAGACATGGGGAAACTGAGACAGATTGGTGGACCAG ACAGTTCACGGCTGACTTCGCGTTTGGGGAATCAGTATGTCAACGTGATGAACATGCTTCTTTTCACACTCCCTGGAACTCCTATAACTT ACTATGGAGAAGAAATTGGAATGGGAAATATTGTAGCCGCAAATCTCAATGAAAGCTATGATATTAATACCCTTCGCTCAAAGTCACCAA TGCAGTGGGACAATAGTTCAAATGCTGGTTTTTCTGAAGCTAGTAACACCTGGTTACCTACCAATTCAGATTACCACACTGTGAATGTTG ATGTCCAAAAGACTCAGCCCAGATCGGCTTTGAAGTTATATCAAGATTTAAGTCTACTTCATGCCAATGAGCTACTCCTCAACAGGGGCT GGTTTTGCCATTTGAGGAATGACAGCCACTATGTTGTGTACACAAGAGAGCTGGATGGCATCGACAGAATCTTTATCGTGGTTCTGAATT TTGGAGAATCAACACTGTTAAATCTACATAATATGATTTCGGGCCTTCCCGCTAAAATGAGAATAAGGTTAAGTACCAATTCTGCCGACA AAGGCAGTAAAGTTGATACAAGTGGCATTTTTCTGGACAAGGGAGAGGGACTCATCTTTGAACACAACACGAAGAATCTCCTTCATCGCC AAACAGCTTTCAGAGATAGATGCTTTGTTTCCAATCGAGCATGCTATTCCAGTGTACTGAACATACTGTATACCTCGTGTTAGGCACCTT TATGAAGAGATGAAGACACTGGCATTTCAGTGGGATTGTAAGCATTTGTAATAGCTTCATGTACAGCATGCTGCTTGGTGAACAATCATT AATTCTTCGATATTTCTGTAGCTTGAATGTAACTGCTTTAAGAAAGGTTCTCAAATGTTTTGAAAAAAATAAAATGTTTAAAAGTAAATT ATGGCTTATAGGAGCTTATAACTTTATTCAGATAGCATCAATCAGGGATGACCAGAACACATTAGGACCCCAGATTATTCAAAAACTTTA ACGAATTTTAAGGGGAAGAATTTTATCTTTTCCCTTAAAATGCAGTCATAGAAATTAGAGGATGACTCACTGCCACAGTGTCTAAAAGCA TTTGCTAGCAAAGAGGCAGGACACTAATTTGTAAACTGCTCAACTGTTCTGACTGGAAGGGAGGCCTGGAGCTCTGCTATCACCAATCCT TCCCTTCCCTCTACTCCACATCCTTCTAAGGAGCATGATTTGAAAATTACTTTCCTAGGTTAATGGGCATGTGCATCAATGGAGAGAATA GTATAAGCAAGTGAGATGTAGACTAAGCAAAATTTAGATGGAGAAGCACATTTTAAAAAATTAATAACTTAAAAGTCTCAAGTTATTAAT TTTTTTTTTGCTAACTCAATTGGAAGTAAGACTATGAAATATTTCAGTGTGTTTCCAATTCCCAGTTGAATGCAGTGTTTCAGAATTTCA GGTATTTCTTAAGATCCTCGAAAACACTGGTGCTGTCAAGTCCAAGTTCCTCGTACAGGAATTTAATTTGGGCTGTAATCTAAAAGAAAC >In-frame_MSH2_ENST00000406134_chr2_47637511_+_SLC3A1_ENST00000409387_chr2_44539725_+_1630nt AAACAGCTTAGTGGGTGTGGGGTCGCGCATTTTCTTCAACCAGGAGGTGAGGAGGTTTCGACATGGCGGTGCAGCCGAAGGAGACGCTGC AGTTGGAGAGCGCGGCCGAGGTCGGCTTCGTGCGCTTCTTTCAGGGCATGCCGGAGAAGCCGACCACCACAGTGCGCCTTTTCGACCGGG GCGACTTCTATACGGCGCACGGCGAGGACGCGCTGCTGGCCGCCCGGGAGGTGTTCAAGACCCAGGGGGTGATCAAGTACATGGGGCCGG CAGGAGCAAAGAATCTGCAGAGTGTTGTGCTTAGTAAAATGAATTTTGAATCTTTTGTAAAAGATCTTCTTCTGGTTCGTCAGTATAGAG TTGAAGTTTATAAGAATAGAGCTGGAAATAAGGCATCCAAGGAGAATGATTGGTATTTGGCATATAAGGCTTCTCCTGGCAATCTCTCTC AGTTTGAAGACATTCTCTTTGGTAACAATGATATGTCAGCTTCCATTGGTGTTGTGGGTGTTAAAATGTCCGCAGTTGATGGCCAGAGAC AGGTTGGAGTTGGGTATGTGGATTCCATACAGAGGAAACTAGGACTGTGTGAATTCCCTGATAATGATCAGTTCTCCAATCTTGAGGCTC TCCTCATCCAGATTGGACCAAAGGAATGTGTTTTACCCGGAGGAGAGACTGCTGGAGACATGGGGAAACTGAGACAGATTGGTGGACCAG ACAGTTCACGGCTGACTTCGCGTTTGGGGAATCAGTATGTCAACGTGATGAACATGCTTCTTTTCACACTCCCTGGAACTCCTATAACTT ACTATGGAGAAGAAATTGGAATGGGAAATATTGTAGCCGCAAATCTCAATGAAAGCTATGATATTAATACCCTTCGCTCAAAGTCACCAA TGCAGTGGGACAATAGTTCAAATGCTGGTTTTTCTGAAGCTAGTAACACCTGGTTACCTACCAATTCAGATTACCACACTGTGAATGTTG ATTCTTGCTCCGTCACCCATGCTCGAGTGCAGTGGCGTGATCTCGGCACACTGCAGCCTCTGCTTCCTGGGTTCAAGTGATTCTCCTGCT GCAGCCTCCCAAGTAGCTGGGATTACAGGTGCACGTCATTATGCCCGGGTAATTTCTGTATTTTTTAGTAGAGATGGTGTTTCACCATGT TGGCCAGGCTGGTCTTGAACTCCTGACCTCTGGTGATCTGTCTGCCTTGCCTCCCAAAGTGCTAGGATTACGGGCCTGAGCCACCTTGCC TGGCCTGCAAAATTTGTTTTTAATAGAAGACACAAGAAATGATTTAAATATTTTATCAACAGAAAACCAGTTCTATCAACTATGGGCCCA GTATGCAGCTTTTAAAAATGACAGTTCTATATACATTGATATGAGACCATTTCAAACAGGTATTCAATAAAGTATAGAATGGTAACATAT CACCAACTGTGTAAAGAAAAATATATAAACATATGAAATGATACATTCTGTGCCTATGCAAACATATGATACATTAAAAACAAAAGAACA TATAGTGCCTGTCTCTGAGGGGAACTGTGAAGCTATGGAAAGGTGTTGAAGAAAACCTTTTTATAGTATGTATTCTTGTAATTGAATAAA |
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FusionGenePPI for MSH2_SLC3A1 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
MSH2 | BRCA1, PTP4A3, BARD1, BLM, CHEK1, CHEK2, ATM, MLH1, MRE11A, NBN, RAD50, MSH6, RFC1, MSH3, ATR, MAX, MYC, ATRIP, PCNA, MSH2, EXO1, OTUB1, SLX4, PMS2, AIRE, PRKCZ, XPA, RPA4, MGMT, TP53, ESR1, ESR2, SNW1, CREBBP, FANCA, GRB7, RPP14, TK1, CDKN1A, SMN1, ANXA7, DTL, SMARCAD1, CDK9, NELFB, PMS1, RAD51, XRCC6, SIRT7, FANCD2, CDK2, HUS1, RAD1, RAD9A, MUTYH, SRSF5, SART1, SRSF11, SRSF7, IK, RBM25, SMARCA5, SRSF10, RPS24, TOP2B, SEPT9, RAD21, HNRNPD, SUPT16H, ERCC1, ERCC4, HDAC6, ATP6V1B2, CUL2, JUP, DPYSL3, XRCC5, NRD1, PDE3A, SEC23A, ST13, STAT3, SUPT5H, RPA3, RPA2, RPA1, POLK, REV1, CCDC8, SUMO2, SIRT6, ANXA6, DNAJC9, EIF3B, FEN1, AARS, CIAPIN1, DHX15, PFDN4, RECQL, RPLP0, RPS5, TRIP13, ZW10, NMD3, SNX27, TIPRL, TPP2, TPT1, NTRK1, CEP19, E2F3, CDC5L, RNF126, UBXN8, FAF2, USP10, ZNF746, CDC14B, RAF1, RPGRIP1L, BRIP1, TOP1, TOP2A, TOP3A, TRIM25, TES, MCM9, MCM8 | SLC3A1 | SLC7A8, EGFR |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Hgene | MSH2 | chr2:47637511 | chr2:44539725 | ENST00000233146 | + | 3 | 16 | 601_671 | 215 | 935 | EXO1 |
Hgene | MSH2 | chr2:47637511 | chr2:44539725 | ENST00000543555 | + | 4 | 17 | 601_671 | 149 | 869 | EXO1 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for MSH2_SLC3A1 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for MSH2_SLC3A1 |
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Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | MSH2 | C2936783 | Colorectal cancer, hereditary nonpolyposis, type 1 | 48 | UNIPROT |
Hgene | MSH2 | C0009405 | Hereditary Nonpolyposis Colorectal Neoplasms | 4 | CTD_human |
Hgene | MSH2 | C0009404 | Colorectal Neoplasms | 1 | CTD_human |
Hgene | MSH2 | C0919267 | ovarian neoplasm | 1 | CTD_human |
Hgene | MSH2 | C2931459 | Lynch syndrome I (site-specific colonic cancer) | 1 | CTD_human |
Tgene | SLC3A1 | C0010691 | Cystinuria | 10 | CTD_human;HPO;ORPHANET;UNIPROT |
Tgene | SLC3A1 | C1848030 | Hypotonia-Cystinuria Syndrome | 1 | CTD_human;ORPHANET |