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Fusion gene ID: 22550 |
FusionGeneSummary for MRPS22_CMPK1 |
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Fusion gene information | Fusion gene name: MRPS22_CMPK1 | Fusion gene ID: 22550 | Hgene | Tgene | Gene symbol | MRPS22 | CMPK1 | Gene ID | 56945 | 51727 |
Gene name | mitochondrial ribosomal protein S22 | cytidine/uridine monophosphate kinase 1 | |
Synonyms | C3orf5|COXPD5|GIBT|GK002|MRP-S22|RPMS22 | CK|CMK|CMPK|UMK|UMP-CMPK|UMPK | |
Cytomap | 3q23 | 1p33 | |
Type of gene | protein-coding | protein-coding | |
Description | 28S ribosomal protein S22, mitochondrialS22mtmitochondrial small ribosomal subunit protein mS22 | UMP-CMP kinaseUMP/CMP kinasecytidine monophosphate (UMP-CMP) kinase 1, cytosoliccytidylate kinasedCMP kinasedeoxycytidylate kinasenucleoside-diphosphate kinaseuridine monophosphate kinaseuridine monophosphate/cytidine monophosphate kinase | |
Modification date | 20180523 | 20180519 | |
UniProtAcc | P82650 | P30085 | |
Ensembl transtripts involved in fusion gene | ENST00000495075, ENST00000310776, ENST00000465056, ENST00000478464, ENST00000489521, | ENST00000371873, ENST00000450808, ENST00000471289, | |
Fusion gene scores | * DoF score | 4 X 4 X 2=32 | 5 X 3 X 3=45 |
# samples | 4 | 5 | |
** MAII score | log2(4/32*10)=0.321928094887362 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(5/45*10)=0.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: MRPS22 [Title/Abstract] AND CMPK1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | CMPK1 | GO:0006165 | nucleoside diphosphate phosphorylation | 23416111 |
Tgene | CMPK1 | GO:0009142 | nucleoside triphosphate biosynthetic process | 23416111 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | AK027204 | MRPS22 | chr3 | 139068439 | + | CMPK1 | chr1 | 47843702 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-3UTR | ENST00000495075 | ENST00000371873 | MRPS22 | chr3 | 139068439 | + | CMPK1 | chr1 | 47843702 | + |
intron-intron | ENST00000495075 | ENST00000450808 | MRPS22 | chr3 | 139068439 | + | CMPK1 | chr1 | 47843702 | + |
intron-intron | ENST00000495075 | ENST00000471289 | MRPS22 | chr3 | 139068439 | + | CMPK1 | chr1 | 47843702 | + |
intron-3UTR | ENST00000310776 | ENST00000371873 | MRPS22 | chr3 | 139068439 | + | CMPK1 | chr1 | 47843702 | + |
intron-intron | ENST00000310776 | ENST00000450808 | MRPS22 | chr3 | 139068439 | + | CMPK1 | chr1 | 47843702 | + |
intron-intron | ENST00000310776 | ENST00000471289 | MRPS22 | chr3 | 139068439 | + | CMPK1 | chr1 | 47843702 | + |
intron-3UTR | ENST00000465056 | ENST00000371873 | MRPS22 | chr3 | 139068439 | + | CMPK1 | chr1 | 47843702 | + |
intron-intron | ENST00000465056 | ENST00000450808 | MRPS22 | chr3 | 139068439 | + | CMPK1 | chr1 | 47843702 | + |
intron-intron | ENST00000465056 | ENST00000471289 | MRPS22 | chr3 | 139068439 | + | CMPK1 | chr1 | 47843702 | + |
intron-3UTR | ENST00000478464 | ENST00000371873 | MRPS22 | chr3 | 139068439 | + | CMPK1 | chr1 | 47843702 | + |
intron-intron | ENST00000478464 | ENST00000450808 | MRPS22 | chr3 | 139068439 | + | CMPK1 | chr1 | 47843702 | + |
intron-intron | ENST00000478464 | ENST00000471289 | MRPS22 | chr3 | 139068439 | + | CMPK1 | chr1 | 47843702 | + |
intron-3UTR | ENST00000489521 | ENST00000371873 | MRPS22 | chr3 | 139068439 | + | CMPK1 | chr1 | 47843702 | + |
intron-intron | ENST00000489521 | ENST00000450808 | MRPS22 | chr3 | 139068439 | + | CMPK1 | chr1 | 47843702 | + |
intron-intron | ENST00000489521 | ENST00000471289 | MRPS22 | chr3 | 139068439 | + | CMPK1 | chr1 | 47843702 | + |
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FusionProtFeatures for MRPS22_CMPK1 |
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Hgene | Tgene |
MRPS22 | CMPK1 |
Catalyzes the phosphorylation of pyrimidine nucleosidemonophosphates at the expense of ATP. Plays an important role inde novo pyrimidine nucleotide biosynthesis. Has preference for UMPand CMP as phosphate acceptors. Also displays broad nucleosidediphosphate kinase activity. {ECO:0000255|HAMAP-Rule:MF_03172,ECO:0000269|PubMed:10462544, ECO:0000269|PubMed:11912132,ECO:0000269|PubMed:23416111}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for MRPS22_CMPK1 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for MRPS22_CMPK1 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for MRPS22_CMPK1 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Tgene | CMPK1 | P30085 | DB00441 | Gemcitabine | UMP-CMP kinase {ECO:0000255|HAMAP-Rule:MF_03172} | small molecule | approved |
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RelatedDiseases for MRPS22_CMPK1 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | MRPS22 | C1458155 | Mammary Neoplasms | 1 | CTD_human |
Hgene | MRPS22 | C2673642 | Combined Oxidative Phosphorylation Deficiency 5 | 1 | CTD_human;ORPHANET;UNIPROT |