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Fusion gene ID: 22546 |
FusionGeneSummary for MRPS18C_SIGLEC10 |
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Fusion gene information | Fusion gene name: MRPS18C_SIGLEC10 | Fusion gene ID: 22546 | Hgene | Tgene | Gene symbol | MRPS18C | SIGLEC10 | Gene ID | 51023 | 89790 |
Gene name | mitochondrial ribosomal protein S18C | sialic acid binding Ig like lectin 10 | |
Synonyms | CGI-134|MRP-S18-1|MRP-S18-c|MRPS18-1|S18mt-c|mrps18-c | PRO940|SIGLEC-10|SLG2 | |
Cytomap | 4q21.23 | 19q13.41 | |
Type of gene | protein-coding | protein-coding | |
Description | 28S ribosomal protein S18c, mitochondrial28S ribosomal protein S18-1, mitochondrialmitochondrial ribosomal protein S18-1mitochondrial small ribosomal subunit protein bS18cmitochondrial small ribosomal subunit protein bS18mmitochondrial small ribosoma | sialic acid-binding Ig-like lectin 10sialic acid binding Ig-like lectin 10 Ig-like lectin 7siglec-like gene 2siglec-like protein 2 | |
Modification date | 20180523 | 20180519 | |
UniProtAcc | Q9Y3D5 | Q96LC7 | |
Ensembl transtripts involved in fusion gene | ENST00000295491, ENST00000507019, ENST00000507349, ENST00000509571, | ENST00000441969, ENST00000353836, ENST00000442846, ENST00000356298, ENST00000432469, ENST00000525998, ENST00000436984, ENST00000439889, ENST00000339313, | |
Fusion gene scores | * DoF score | 3 X 3 X 2=18 | 1 X 1 X 1=1 |
# samples | 4 | 2 | |
** MAII score | log2(4/18*10)=1.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(2/1*10)=4.32192809488736 | |
Context | PubMed: MRPS18C [Title/Abstract] AND SIGLEC10 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | BX363877 | MRPS18C | chr4 | 84382386 | + | SIGLEC10 | chr19 | 51913817 | - | ||
ChiTaRS3.1 | BX328907 | MRPS18C | chr4 | 84382386 | + | SIGLEC10 | chr19 | 51913817 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
3UTR-3UTR | ENST00000295491 | ENST00000441969 | MRPS18C | chr4 | 84382386 | + | SIGLEC10 | chr19 | 51913817 | - |
3UTR-3UTR | ENST00000295491 | ENST00000353836 | MRPS18C | chr4 | 84382386 | + | SIGLEC10 | chr19 | 51913817 | - |
3UTR-3UTR | ENST00000295491 | ENST00000442846 | MRPS18C | chr4 | 84382386 | + | SIGLEC10 | chr19 | 51913817 | - |
3UTR-intron | ENST00000295491 | ENST00000356298 | MRPS18C | chr4 | 84382386 | + | SIGLEC10 | chr19 | 51913817 | - |
3UTR-3UTR | ENST00000295491 | ENST00000432469 | MRPS18C | chr4 | 84382386 | + | SIGLEC10 | chr19 | 51913817 | - |
3UTR-intron | ENST00000295491 | ENST00000525998 | MRPS18C | chr4 | 84382386 | + | SIGLEC10 | chr19 | 51913817 | - |
3UTR-intron | ENST00000295491 | ENST00000436984 | MRPS18C | chr4 | 84382386 | + | SIGLEC10 | chr19 | 51913817 | - |
3UTR-intron | ENST00000295491 | ENST00000439889 | MRPS18C | chr4 | 84382386 | + | SIGLEC10 | chr19 | 51913817 | - |
3UTR-intron | ENST00000295491 | ENST00000339313 | MRPS18C | chr4 | 84382386 | + | SIGLEC10 | chr19 | 51913817 | - |
3UTR-3UTR | ENST00000507019 | ENST00000441969 | MRPS18C | chr4 | 84382386 | + | SIGLEC10 | chr19 | 51913817 | - |
3UTR-3UTR | ENST00000507019 | ENST00000353836 | MRPS18C | chr4 | 84382386 | + | SIGLEC10 | chr19 | 51913817 | - |
3UTR-3UTR | ENST00000507019 | ENST00000442846 | MRPS18C | chr4 | 84382386 | + | SIGLEC10 | chr19 | 51913817 | - |
3UTR-intron | ENST00000507019 | ENST00000356298 | MRPS18C | chr4 | 84382386 | + | SIGLEC10 | chr19 | 51913817 | - |
3UTR-3UTR | ENST00000507019 | ENST00000432469 | MRPS18C | chr4 | 84382386 | + | SIGLEC10 | chr19 | 51913817 | - |
3UTR-intron | ENST00000507019 | ENST00000525998 | MRPS18C | chr4 | 84382386 | + | SIGLEC10 | chr19 | 51913817 | - |
3UTR-intron | ENST00000507019 | ENST00000436984 | MRPS18C | chr4 | 84382386 | + | SIGLEC10 | chr19 | 51913817 | - |
3UTR-intron | ENST00000507019 | ENST00000439889 | MRPS18C | chr4 | 84382386 | + | SIGLEC10 | chr19 | 51913817 | - |
3UTR-intron | ENST00000507019 | ENST00000339313 | MRPS18C | chr4 | 84382386 | + | SIGLEC10 | chr19 | 51913817 | - |
5CDS-3UTR | ENST00000507349 | ENST00000441969 | MRPS18C | chr4 | 84382386 | + | SIGLEC10 | chr19 | 51913817 | - |
5CDS-3UTR | ENST00000507349 | ENST00000353836 | MRPS18C | chr4 | 84382386 | + | SIGLEC10 | chr19 | 51913817 | - |
5CDS-3UTR | ENST00000507349 | ENST00000442846 | MRPS18C | chr4 | 84382386 | + | SIGLEC10 | chr19 | 51913817 | - |
5CDS-intron | ENST00000507349 | ENST00000356298 | MRPS18C | chr4 | 84382386 | + | SIGLEC10 | chr19 | 51913817 | - |
5CDS-3UTR | ENST00000507349 | ENST00000432469 | MRPS18C | chr4 | 84382386 | + | SIGLEC10 | chr19 | 51913817 | - |
5CDS-intron | ENST00000507349 | ENST00000525998 | MRPS18C | chr4 | 84382386 | + | SIGLEC10 | chr19 | 51913817 | - |
5CDS-intron | ENST00000507349 | ENST00000436984 | MRPS18C | chr4 | 84382386 | + | SIGLEC10 | chr19 | 51913817 | - |
5CDS-intron | ENST00000507349 | ENST00000439889 | MRPS18C | chr4 | 84382386 | + | SIGLEC10 | chr19 | 51913817 | - |
5CDS-intron | ENST00000507349 | ENST00000339313 | MRPS18C | chr4 | 84382386 | + | SIGLEC10 | chr19 | 51913817 | - |
3UTR-3UTR | ENST00000509571 | ENST00000441969 | MRPS18C | chr4 | 84382386 | + | SIGLEC10 | chr19 | 51913817 | - |
3UTR-3UTR | ENST00000509571 | ENST00000353836 | MRPS18C | chr4 | 84382386 | + | SIGLEC10 | chr19 | 51913817 | - |
3UTR-3UTR | ENST00000509571 | ENST00000442846 | MRPS18C | chr4 | 84382386 | + | SIGLEC10 | chr19 | 51913817 | - |
3UTR-intron | ENST00000509571 | ENST00000356298 | MRPS18C | chr4 | 84382386 | + | SIGLEC10 | chr19 | 51913817 | - |
3UTR-3UTR | ENST00000509571 | ENST00000432469 | MRPS18C | chr4 | 84382386 | + | SIGLEC10 | chr19 | 51913817 | - |
3UTR-intron | ENST00000509571 | ENST00000525998 | MRPS18C | chr4 | 84382386 | + | SIGLEC10 | chr19 | 51913817 | - |
3UTR-intron | ENST00000509571 | ENST00000436984 | MRPS18C | chr4 | 84382386 | + | SIGLEC10 | chr19 | 51913817 | - |
3UTR-intron | ENST00000509571 | ENST00000439889 | MRPS18C | chr4 | 84382386 | + | SIGLEC10 | chr19 | 51913817 | - |
3UTR-intron | ENST00000509571 | ENST00000339313 | MRPS18C | chr4 | 84382386 | + | SIGLEC10 | chr19 | 51913817 | - |
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FusionProtFeatures for MRPS18C_SIGLEC10 |
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Hgene | Tgene |
MRPS18C | SIGLEC10 |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for MRPS18C_SIGLEC10 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for MRPS18C_SIGLEC10 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for MRPS18C_SIGLEC10 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for MRPS18C_SIGLEC10 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |