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Fusion gene ID: 22514 |
FusionGeneSummary for MRPL48_MAGOH |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: MRPL48_MAGOH | Fusion gene ID: 22514 | Hgene | Tgene | Gene symbol | MRPL48 | MAGOH | Gene ID | 51642 | 4116 |
| Gene name | mitochondrial ribosomal protein L48 | mago homolog, exon junction complex subunit | |
| Synonyms | CGI-118|HSPC290|L48MT|MRP-L48 | MAGOH1|MAGOHA | |
| Cytomap | 11q13.4 | 1p32.3 | |
| Type of gene | protein-coding | protein-coding | |
| Description | 39S ribosomal protein L48, mitochondrialmitochondrial large ribosomal subunit protein mL48 | protein mago nashi homologmago homolog, exon junction complex core componentmago-nashi homolog, proliferation-associated | |
| Modification date | 20180523 | 20180523 | |
| UniProtAcc | Q96GC5 | P61326 | |
| Ensembl transtripts involved in fusion gene | ENST00000310614, ENST00000535529, ENST00000411840, ENST00000398483, ENST00000542303, ENST00000314282, | ENST00000371470, ENST00000371466, ENST00000462941, | |
| Fusion gene scores | * DoF score | 11 X 4 X 8=352 | 1 X 1 X 1=1 |
| # samples | 17 | 1 | |
| ** MAII score | log2(17/352*10)=-1.0500406824996 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(1/1*10)=3.32192809488736 | |
| Context | PubMed: MRPL48 [Title/Abstract] AND MAGOH [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChiTaRS3.1 | BX109950 | MRPL48 | chr11 | 73569262 | + | MAGOH | chr1 | 53696039 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| intron-intron | ENST00000310614 | ENST00000371470 | MRPL48 | chr11 | 73569262 | + | MAGOH | chr1 | 53696039 | - |
| intron-intron | ENST00000310614 | ENST00000371466 | MRPL48 | chr11 | 73569262 | + | MAGOH | chr1 | 53696039 | - |
| intron-intron | ENST00000310614 | ENST00000462941 | MRPL48 | chr11 | 73569262 | + | MAGOH | chr1 | 53696039 | - |
| intron-intron | ENST00000535529 | ENST00000371470 | MRPL48 | chr11 | 73569262 | + | MAGOH | chr1 | 53696039 | - |
| intron-intron | ENST00000535529 | ENST00000371466 | MRPL48 | chr11 | 73569262 | + | MAGOH | chr1 | 53696039 | - |
| intron-intron | ENST00000535529 | ENST00000462941 | MRPL48 | chr11 | 73569262 | + | MAGOH | chr1 | 53696039 | - |
| intron-intron | ENST00000411840 | ENST00000371470 | MRPL48 | chr11 | 73569262 | + | MAGOH | chr1 | 53696039 | - |
| intron-intron | ENST00000411840 | ENST00000371466 | MRPL48 | chr11 | 73569262 | + | MAGOH | chr1 | 53696039 | - |
| intron-intron | ENST00000411840 | ENST00000462941 | MRPL48 | chr11 | 73569262 | + | MAGOH | chr1 | 53696039 | - |
| intron-intron | ENST00000398483 | ENST00000371470 | MRPL48 | chr11 | 73569262 | + | MAGOH | chr1 | 53696039 | - |
| intron-intron | ENST00000398483 | ENST00000371466 | MRPL48 | chr11 | 73569262 | + | MAGOH | chr1 | 53696039 | - |
| intron-intron | ENST00000398483 | ENST00000462941 | MRPL48 | chr11 | 73569262 | + | MAGOH | chr1 | 53696039 | - |
| intron-intron | ENST00000542303 | ENST00000371470 | MRPL48 | chr11 | 73569262 | + | MAGOH | chr1 | 53696039 | - |
| intron-intron | ENST00000542303 | ENST00000371466 | MRPL48 | chr11 | 73569262 | + | MAGOH | chr1 | 53696039 | - |
| intron-intron | ENST00000542303 | ENST00000462941 | MRPL48 | chr11 | 73569262 | + | MAGOH | chr1 | 53696039 | - |
| intron-intron | ENST00000314282 | ENST00000371470 | MRPL48 | chr11 | 73569262 | + | MAGOH | chr1 | 53696039 | - |
| intron-intron | ENST00000314282 | ENST00000371466 | MRPL48 | chr11 | 73569262 | + | MAGOH | chr1 | 53696039 | - |
| intron-intron | ENST00000314282 | ENST00000462941 | MRPL48 | chr11 | 73569262 | + | MAGOH | chr1 | 53696039 | - |
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FusionProtFeatures for MRPL48_MAGOH |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| MRPL48 | MAGOH |
| Core component of the splicing-dependent multiproteinexon junction complex (EJC) deposited at splice junctions onmRNAs. The EJC is a dynamic structure consisting of core proteinsand several peripheral nuclear and cytoplasmic associated factorsthat join the complex only transiently either during EJC assemblyor during subsequent mRNA metabolism. The EJC marks the positionof the exon-exon junction in the mature mRNA for the geneexpression machinery and the core components remain bound tospliced mRNAs throughout all stages of mRNA metabolism therebyinfluencing downstream processes including nuclear mRNA export,subcellular mRNA localization, translation efficiency andnonsense-mediated mRNA decay (NMD). The MAGOH-RBM8A heterodimerinhibits the ATPase activity of EIF4A3, thereby trapping the ATP-bound EJC core onto spliced mRNA in a stable conformation. TheMAGOH-RBM8A heterodimer interacts with the EJC key regulator PYM1leading to EJC disassembly in the cytoplasm and translationenhancement of EJC-bearing spliced mRNAs by recruiting them to theribosomal 48S preinitiation complex. Involved in the splicingmodulation of BCL2L1/Bcl-X (and probably other apoptotic genes);specifically inhibits formation of proapoptotic isoforms such asBcl-X(S); the function is different from the established EJCassembly. {ECO:0000269|PubMed:12730685,ECO:0000269|PubMed:16209946, ECO:0000269|PubMed:22203037}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for MRPL48_MAGOH |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for MRPL48_MAGOH |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for MRPL48_MAGOH |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for MRPL48_MAGOH |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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