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Fusion gene ID: 21857 |
FusionGeneSummary for MIA3_SLAIN1 |
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Fusion gene information | Fusion gene name: MIA3_SLAIN1 | Fusion gene ID: 21857 | Hgene | Tgene | Gene symbol | MIA3 | SLAIN1 | Gene ID | 375056 | 122060 |
Gene name | MIA SH3 domain ER export factor 3 | SLAIN motif family member 1 | |
Synonyms | ARNT|D320|TANGO|TANGO1|UNQ6077 | C13orf32 | |
Cytomap | 1q41 | 13q22.3 | |
Type of gene | protein-coding | protein-coding | |
Description | transport and Golgi organization protein 1 homologC219-reactive peptideMIA family member 3, ER export factormelanoma inhibitory activity family, member 3melanoma inhibitory activity protein 3transport and Golgi organization protein 1 | SLAIN motif-containing protein 1 | |
Modification date | 20180523 | 20180519 | |
UniProtAcc | Q5JRA6 | Q8ND83 | |
Ensembl transtripts involved in fusion gene | ENST00000344922, ENST00000344441, ENST00000344507, ENST00000340535, ENST00000470521, | ENST00000466548, ENST00000418532, ENST00000488699, ENST00000267219, ENST00000351546, ENST00000465831, ENST00000314070, ENST00000358679, | |
Fusion gene scores | * DoF score | 3 X 3 X 1=9 | 4 X 4 X 2=32 |
# samples | 3 | 4 | |
** MAII score | log2(3/9*10)=1.73696559416621 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(4/32*10)=0.321928094887362 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: MIA3 [Title/Abstract] AND SLAIN1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | MIA3 | GO:0002687 | positive regulation of leukocyte migration | 17726152 |
Hgene | MIA3 | GO:0007162 | negative regulation of cell adhesion | 17726152 |
Hgene | MIA3 | GO:0030336 | negative regulation of cell migration | 17044017 |
Hgene | MIA3 | GO:0042060 | wound healing | 17044017 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | AW899124 | MIA3 | chr1 | 222826620 | + | SLAIN1 | chr13 | 78315658 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-intron | ENST00000344922 | ENST00000466548 | MIA3 | chr1 | 222826620 | + | SLAIN1 | chr13 | 78315658 | + |
5CDS-intron | ENST00000344922 | ENST00000418532 | MIA3 | chr1 | 222826620 | + | SLAIN1 | chr13 | 78315658 | + |
5CDS-intron | ENST00000344922 | ENST00000488699 | MIA3 | chr1 | 222826620 | + | SLAIN1 | chr13 | 78315658 | + |
5CDS-intron | ENST00000344922 | ENST00000267219 | MIA3 | chr1 | 222826620 | + | SLAIN1 | chr13 | 78315658 | + |
5CDS-intron | ENST00000344922 | ENST00000351546 | MIA3 | chr1 | 222826620 | + | SLAIN1 | chr13 | 78315658 | + |
5CDS-intron | ENST00000344922 | ENST00000465831 | MIA3 | chr1 | 222826620 | + | SLAIN1 | chr13 | 78315658 | + |
5CDS-intron | ENST00000344922 | ENST00000314070 | MIA3 | chr1 | 222826620 | + | SLAIN1 | chr13 | 78315658 | + |
5CDS-intron | ENST00000344922 | ENST00000358679 | MIA3 | chr1 | 222826620 | + | SLAIN1 | chr13 | 78315658 | + |
5CDS-intron | ENST00000344441 | ENST00000466548 | MIA3 | chr1 | 222826620 | + | SLAIN1 | chr13 | 78315658 | + |
5CDS-intron | ENST00000344441 | ENST00000418532 | MIA3 | chr1 | 222826620 | + | SLAIN1 | chr13 | 78315658 | + |
5CDS-intron | ENST00000344441 | ENST00000488699 | MIA3 | chr1 | 222826620 | + | SLAIN1 | chr13 | 78315658 | + |
5CDS-intron | ENST00000344441 | ENST00000267219 | MIA3 | chr1 | 222826620 | + | SLAIN1 | chr13 | 78315658 | + |
5CDS-intron | ENST00000344441 | ENST00000351546 | MIA3 | chr1 | 222826620 | + | SLAIN1 | chr13 | 78315658 | + |
5CDS-intron | ENST00000344441 | ENST00000465831 | MIA3 | chr1 | 222826620 | + | SLAIN1 | chr13 | 78315658 | + |
5CDS-intron | ENST00000344441 | ENST00000314070 | MIA3 | chr1 | 222826620 | + | SLAIN1 | chr13 | 78315658 | + |
5CDS-intron | ENST00000344441 | ENST00000358679 | MIA3 | chr1 | 222826620 | + | SLAIN1 | chr13 | 78315658 | + |
intron-intron | ENST00000344507 | ENST00000466548 | MIA3 | chr1 | 222826620 | + | SLAIN1 | chr13 | 78315658 | + |
intron-intron | ENST00000344507 | ENST00000418532 | MIA3 | chr1 | 222826620 | + | SLAIN1 | chr13 | 78315658 | + |
intron-intron | ENST00000344507 | ENST00000488699 | MIA3 | chr1 | 222826620 | + | SLAIN1 | chr13 | 78315658 | + |
intron-intron | ENST00000344507 | ENST00000267219 | MIA3 | chr1 | 222826620 | + | SLAIN1 | chr13 | 78315658 | + |
intron-intron | ENST00000344507 | ENST00000351546 | MIA3 | chr1 | 222826620 | + | SLAIN1 | chr13 | 78315658 | + |
intron-intron | ENST00000344507 | ENST00000465831 | MIA3 | chr1 | 222826620 | + | SLAIN1 | chr13 | 78315658 | + |
intron-intron | ENST00000344507 | ENST00000314070 | MIA3 | chr1 | 222826620 | + | SLAIN1 | chr13 | 78315658 | + |
intron-intron | ENST00000344507 | ENST00000358679 | MIA3 | chr1 | 222826620 | + | SLAIN1 | chr13 | 78315658 | + |
5CDS-intron | ENST00000340535 | ENST00000466548 | MIA3 | chr1 | 222826620 | + | SLAIN1 | chr13 | 78315658 | + |
5CDS-intron | ENST00000340535 | ENST00000418532 | MIA3 | chr1 | 222826620 | + | SLAIN1 | chr13 | 78315658 | + |
5CDS-intron | ENST00000340535 | ENST00000488699 | MIA3 | chr1 | 222826620 | + | SLAIN1 | chr13 | 78315658 | + |
5CDS-intron | ENST00000340535 | ENST00000267219 | MIA3 | chr1 | 222826620 | + | SLAIN1 | chr13 | 78315658 | + |
5CDS-intron | ENST00000340535 | ENST00000351546 | MIA3 | chr1 | 222826620 | + | SLAIN1 | chr13 | 78315658 | + |
5CDS-intron | ENST00000340535 | ENST00000465831 | MIA3 | chr1 | 222826620 | + | SLAIN1 | chr13 | 78315658 | + |
5CDS-intron | ENST00000340535 | ENST00000314070 | MIA3 | chr1 | 222826620 | + | SLAIN1 | chr13 | 78315658 | + |
5CDS-intron | ENST00000340535 | ENST00000358679 | MIA3 | chr1 | 222826620 | + | SLAIN1 | chr13 | 78315658 | + |
intron-intron | ENST00000470521 | ENST00000466548 | MIA3 | chr1 | 222826620 | + | SLAIN1 | chr13 | 78315658 | + |
intron-intron | ENST00000470521 | ENST00000418532 | MIA3 | chr1 | 222826620 | + | SLAIN1 | chr13 | 78315658 | + |
intron-intron | ENST00000470521 | ENST00000488699 | MIA3 | chr1 | 222826620 | + | SLAIN1 | chr13 | 78315658 | + |
intron-intron | ENST00000470521 | ENST00000267219 | MIA3 | chr1 | 222826620 | + | SLAIN1 | chr13 | 78315658 | + |
intron-intron | ENST00000470521 | ENST00000351546 | MIA3 | chr1 | 222826620 | + | SLAIN1 | chr13 | 78315658 | + |
intron-intron | ENST00000470521 | ENST00000465831 | MIA3 | chr1 | 222826620 | + | SLAIN1 | chr13 | 78315658 | + |
intron-intron | ENST00000470521 | ENST00000314070 | MIA3 | chr1 | 222826620 | + | SLAIN1 | chr13 | 78315658 | + |
intron-intron | ENST00000470521 | ENST00000358679 | MIA3 | chr1 | 222826620 | + | SLAIN1 | chr13 | 78315658 | + |
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FusionProtFeatures for MIA3_SLAIN1 |
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Hgene | Tgene |
MIA3 | SLAIN1 |
Microtubule plus-end tracking protein that might beinvolved in the regulation of cytoplasmic microtubule dynamics,microtubule organization and microtubule elongation.{ECO:0000269|PubMed:21646404}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for MIA3_SLAIN1 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for MIA3_SLAIN1 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for MIA3_SLAIN1 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for MIA3_SLAIN1 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | MIA3 | C0027051 | Myocardial Infarction | 1 | CTD_human |
Hgene | MIA3 | C1956346 | Coronary Artery Disease | 1 | CTD_human |