![]() |
||||||
|
![]() | |
![]() | |
![]() | |
![]() | |
![]() | |
![]() |
Fusion gene ID: 21658 |
FusionGeneSummary for MEST_STRIP2 |
![]() |
Fusion gene information | Fusion gene name: MEST_STRIP2 | Fusion gene ID: 21658 | Hgene | Tgene | Gene symbol | MEST | STRIP2 | Gene ID | 4232 | 57464 |
Gene name | mesoderm specific transcript | striatin interacting protein 2 | |
Synonyms | PEG1 | FAM40B|FAR11B | |
Cytomap | 7q32.2 | 7q32.1 | |
Type of gene | protein-coding | protein-coding | |
Description | mesoderm-specific transcript homolog proteinpaternally-expressed gene 1 protein | striatin-interacting protein 2FAR11 factor arrest 11 homolog Bfamily with sequence similarity 40, member Bhomolog of yeast FAR11 protein 2protein FAM40B | |
Modification date | 20180523 | 20180519 | |
UniProtAcc | Q5EB52 | Q9ULQ0 | |
Ensembl transtripts involved in fusion gene | ENST00000341441, ENST00000378576, ENST00000416162, ENST00000393187, ENST00000223215, ENST00000437945, ENST00000462132, | ENST00000249344, ENST00000435494, | |
Fusion gene scores | * DoF score | 4 X 4 X 2=32 | 3 X 3 X 3=27 |
# samples | 4 | 3 | |
** MAII score | log2(4/32*10)=0.321928094887362 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(3/27*10)=0.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: MEST [Title/Abstract] AND STRIP2 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
![]() |
Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | UCEC | TCGA-B5-A5OD-01A | MEST | chr7 | 130143837 | + | STRIP2 | chr7 | 129120626 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000341441 | ENST00000249344 | MEST | chr7 | 130143837 | + | STRIP2 | chr7 | 129120626 | + |
Frame-shift | ENST00000341441 | ENST00000435494 | MEST | chr7 | 130143837 | + | STRIP2 | chr7 | 129120626 | + |
Frame-shift | ENST00000378576 | ENST00000249344 | MEST | chr7 | 130143837 | + | STRIP2 | chr7 | 129120626 | + |
Frame-shift | ENST00000378576 | ENST00000435494 | MEST | chr7 | 130143837 | + | STRIP2 | chr7 | 129120626 | + |
Frame-shift | ENST00000416162 | ENST00000249344 | MEST | chr7 | 130143837 | + | STRIP2 | chr7 | 129120626 | + |
Frame-shift | ENST00000416162 | ENST00000435494 | MEST | chr7 | 130143837 | + | STRIP2 | chr7 | 129120626 | + |
Frame-shift | ENST00000393187 | ENST00000249344 | MEST | chr7 | 130143837 | + | STRIP2 | chr7 | 129120626 | + |
Frame-shift | ENST00000393187 | ENST00000435494 | MEST | chr7 | 130143837 | + | STRIP2 | chr7 | 129120626 | + |
Frame-shift | ENST00000223215 | ENST00000249344 | MEST | chr7 | 130143837 | + | STRIP2 | chr7 | 129120626 | + |
Frame-shift | ENST00000223215 | ENST00000435494 | MEST | chr7 | 130143837 | + | STRIP2 | chr7 | 129120626 | + |
intron-3CDS | ENST00000437945 | ENST00000249344 | MEST | chr7 | 130143837 | + | STRIP2 | chr7 | 129120626 | + |
intron-3CDS | ENST00000437945 | ENST00000435494 | MEST | chr7 | 130143837 | + | STRIP2 | chr7 | 129120626 | + |
intron-3CDS | ENST00000462132 | ENST00000249344 | MEST | chr7 | 130143837 | + | STRIP2 | chr7 | 129120626 | + |
intron-3CDS | ENST00000462132 | ENST00000435494 | MEST | chr7 | 130143837 | + | STRIP2 | chr7 | 129120626 | + |
Top |
FusionProtFeatures for MEST_STRIP2 |
![]() |
Hgene | Tgene |
MEST | STRIP2 |
Plays a role in the regulation of cell morphology andcytoskeletal organization. Required in the control of cell shape.{ECO:0000269|PubMed:21834987}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Top |
FusionGeneSequence for MEST_STRIP2 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
Top |
FusionGenePPI for MEST_STRIP2 |
![]() |
![]() |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
MEST | ABCD3, SMYD3, HGS, DBN1, CRELD2, CEP70, ZNF579, ING5, FEZ1, KIFAP3, FST, BAG6, CMTM3, ZNF205, BLOC1S2, APP, MPZL2, CD300C | STRIP2 | CTTNBP2, CTTNBP2NL, STRIP1, MOB4, STK26, SIKE1, STK24, STK25, STRN, STRN3, TRAF3IP3, ZRANB1, APP, PPP2CB, SLMAP, PPP2CA, FGFR1OP2, PRDM14 |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
RelatedDrugs for MEST_STRIP2 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
RelatedDiseases for MEST_STRIP2 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | MEST | C0043094 | Weight Gain | 1 | CTD_human |