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Fusion gene ID: 21546 |
FusionGeneSummary for MED24_SLC4A1 |
Fusion gene summary |
Fusion gene information | Fusion gene name: MED24_SLC4A1 | Fusion gene ID: 21546 | Hgene | Tgene | Gene symbol | MED24 | SLC4A1 | Gene ID | 9862 | 6521 |
Gene name | mediator complex subunit 24 | solute carrier family 4 member 1 (Diego blood group) | |
Synonyms | ARC100|CRSP100|CRSP4|DRIP100|MED5|THRAP4|TRAP100 | AE1|BND3|CD233|CHC|DI|EMPB3|EPB3|FR|RTA1A|SAO|SPH4|SW|WD|WD1|WR | |
Cytomap | 17q21.1 | 17q21.31 | |
Type of gene | protein-coding | protein-coding | |
Description | mediator of RNA polymerase II transcription subunit 24CRSP complex subunit 4activator-recruited cofactor 100 kDa componentcofactor required for Sp1 transcriptional activation subunit 4cofactor required for Sp1 transcriptional activation, subunit 4, 10 | band 3 anion transport proteinDiego blood groupFroese blood groupSwann blood groupWaldner blood groupWright blood groupanion exchange protein 1anion exchanger-1erythrocyte membrane protein band 3erythroid anion exchange proteinsolute carrier fam | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | O75448 | P02730 | |
Ensembl transtripts involved in fusion gene | ENST00000394126, ENST00000356271, ENST00000394128, ENST00000394127, ENST00000501516, ENST00000479829, | ENST00000262418, ENST00000471005, | |
Fusion gene scores | * DoF score | 14 X 9 X 8=1008 | 1 X 1 X 1=1 |
# samples | 15 | 1 | |
** MAII score | log2(15/1008*10)=-2.74846123300404 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(1/1*10)=3.32192809488736 | |
Context | PubMed: MED24 [Title/Abstract] AND SLC4A1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | MED24 | GO:0006367 | transcription initiation from RNA polymerase II promoter | 12218053 |
Hgene | MED24 | GO:0030518 | intracellular steroid hormone receptor signaling pathway | 11867769 |
Hgene | MED24 | GO:0030521 | androgen receptor signaling pathway | 12218053 |
Hgene | MED24 | GO:0045893 | positive regulation of transcription, DNA-templated | 10198638 |
Tgene | SLC4A1 | GO:0006820 | anion transport | 14734552 |
Tgene | SLC4A1 | GO:0015701 | bicarbonate transport | 24121512 |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | BRCA | TCGA-BH-A0B7-01A | MED24 | chr17 | 38179384 | - | SLC4A1 | chr17 | 42328700 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000394126 | ENST00000262418 | MED24 | chr17 | 38179384 | - | SLC4A1 | chr17 | 42328700 | - |
5CDS-intron | ENST00000394126 | ENST00000471005 | MED24 | chr17 | 38179384 | - | SLC4A1 | chr17 | 42328700 | - |
Frame-shift | ENST00000356271 | ENST00000262418 | MED24 | chr17 | 38179384 | - | SLC4A1 | chr17 | 42328700 | - |
5CDS-intron | ENST00000356271 | ENST00000471005 | MED24 | chr17 | 38179384 | - | SLC4A1 | chr17 | 42328700 | - |
Frame-shift | ENST00000394128 | ENST00000262418 | MED24 | chr17 | 38179384 | - | SLC4A1 | chr17 | 42328700 | - |
5CDS-intron | ENST00000394128 | ENST00000471005 | MED24 | chr17 | 38179384 | - | SLC4A1 | chr17 | 42328700 | - |
Frame-shift | ENST00000394127 | ENST00000262418 | MED24 | chr17 | 38179384 | - | SLC4A1 | chr17 | 42328700 | - |
5CDS-intron | ENST00000394127 | ENST00000471005 | MED24 | chr17 | 38179384 | - | SLC4A1 | chr17 | 42328700 | - |
In-frame | ENST00000501516 | ENST00000262418 | MED24 | chr17 | 38179384 | - | SLC4A1 | chr17 | 42328700 | - |
5CDS-intron | ENST00000501516 | ENST00000471005 | MED24 | chr17 | 38179384 | - | SLC4A1 | chr17 | 42328700 | - |
intron-3CDS | ENST00000479829 | ENST00000262418 | MED24 | chr17 | 38179384 | - | SLC4A1 | chr17 | 42328700 | - |
intron-intron | ENST00000479829 | ENST00000471005 | MED24 | chr17 | 38179384 | - | SLC4A1 | chr17 | 42328700 | - |
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FusionProtFeatures for MED24_SLC4A1 |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
MED24 | SLC4A1 |
Component of the Mediator complex, a coactivatorinvolved in the regulated transcription of nearly all RNApolymerase II-dependent genes. Mediator functions as a bridge toconvey information from gene-specific regulatory proteins to thebasal RNA polymerase II transcription machinery. Mediator isrecruited to promoters by direct interactions with regulatoryproteins and serves as a scaffold for the assembly of a functionalpreinitiation complex with RNA polymerase II and the generaltranscription factors. {ECO:0000269|PubMed:12218053,ECO:0000269|PubMed:16595664}. | Functions both as a transporter that mediateselectroneutral anion exchange across the cell membrane and as astructural protein. Major integral membrane glycoprotein of theerythrocyte membrane; required for normal flexibility andstability of the erythrocyte membrane and for normal erythrocyteshape via the interactions of its cytoplasmic domain withcytoskeletal proteins, glycolytic enzymes, and hemoglobin.Functions as a transporter that mediates the 1:1 exchange ofinorganic anions across the erythrocyte membrane. Mediateschloride-bicarbonate exchange in the kidney, and is required fornormal acidification of the urine. {ECO:0000269|PubMed:10926824,ECO:0000269|PubMed:14734552, ECO:0000269|PubMed:1538405,ECO:0000269|PubMed:20151848, ECO:0000269|PubMed:24121512}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | MED24 | chr17:38179384 | chr17:42328700 | ENST00000356271 | - | 19 | 25 | 128_132 | 737 | 977 | Motif | Note=LXXLL motif 1 |
Hgene | MED24 | chr17:38179384 | chr17:42328700 | ENST00000356271 | - | 19 | 25 | 344_348 | 737 | 977 | Motif | Note=LXXLL motif 2 |
Hgene | MED24 | chr17:38179384 | chr17:42328700 | ENST00000356271 | - | 19 | 25 | 448_452 | 737 | 977 | Motif | Note=LXXLL motif 3 |
Hgene | MED24 | chr17:38179384 | chr17:42328700 | ENST00000356271 | - | 19 | 25 | 557_561 | 737 | 977 | Motif | Note=LXXLL motif 4 |
Hgene | MED24 | chr17:38179384 | chr17:42328700 | ENST00000394127 | - | 19 | 25 | 128_132 | 737 | 977 | Motif | Note=LXXLL motif 1 |
Hgene | MED24 | chr17:38179384 | chr17:42328700 | ENST00000394127 | - | 19 | 25 | 344_348 | 737 | 977 | Motif | Note=LXXLL motif 2 |
Hgene | MED24 | chr17:38179384 | chr17:42328700 | ENST00000394127 | - | 19 | 25 | 448_452 | 737 | 977 | Motif | Note=LXXLL motif 3 |
Hgene | MED24 | chr17:38179384 | chr17:42328700 | ENST00000394127 | - | 19 | 25 | 557_561 | 737 | 977 | Motif | Note=LXXLL motif 4 |
Hgene | MED24 | chr17:38179384 | chr17:42328700 | ENST00000394128 | - | 20 | 26 | 128_132 | 750 | 990 | Motif | Note=LXXLL motif 1 |
Hgene | MED24 | chr17:38179384 | chr17:42328700 | ENST00000394128 | - | 20 | 26 | 344_348 | 750 | 990 | Motif | Note=LXXLL motif 2 |
Hgene | MED24 | chr17:38179384 | chr17:42328700 | ENST00000394128 | - | 20 | 26 | 448_452 | 750 | 990 | Motif | Note=LXXLL motif 3 |
Hgene | MED24 | chr17:38179384 | chr17:42328700 | ENST00000394128 | - | 20 | 26 | 557_561 | 750 | 990 | Motif | Note=LXXLL motif 4 |
Tgene | >SLC4A1 | chr17:38179384 | chr17:42328700 | ENST00000262418 | - | 17 | 20 | 839_869 | 827 | 912 | Intramembrane | Discontinuously helical |
Tgene | >SLC4A1 | chr17:38179384 | chr17:42328700 | ENST00000262418 | - | 17 | 20 | 870_911 | 827 | 912 | Topological domain | Cytoplasmic |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >MED24 | chr17:38179384 | chr17:42328700 | ENST00000356271 | - | 19 | 25 | 788_792 | 737 | 977 | Motif | Note=LXXLL motif 5 |
Hgene | >MED24 | chr17:38179384 | chr17:42328700 | ENST00000356271 | - | 19 | 25 | 857_861 | 737 | 977 | Motif | Note=LXXLL motif 6 |
Hgene | >MED24 | chr17:38179384 | chr17:42328700 | ENST00000394127 | - | 19 | 25 | 788_792 | 737 | 977 | Motif | Note=LXXLL motif 5 |
Hgene | >MED24 | chr17:38179384 | chr17:42328700 | ENST00000394127 | - | 19 | 25 | 857_861 | 737 | 977 | Motif | Note=LXXLL motif 6 |
Hgene | >MED24 | chr17:38179384 | chr17:42328700 | ENST00000394128 | - | 20 | 26 | 788_792 | 750 | 990 | Motif | Note=LXXLL motif 5 |
Hgene | >MED24 | chr17:38179384 | chr17:42328700 | ENST00000394128 | - | 20 | 26 | 857_861 | 750 | 990 | Motif | Note=LXXLL motif 6 |
Tgene | SLC4A1 | chr17:38179384 | chr17:42328700 | ENST00000262418 | - | 17 | 20 | 304_357 | 827 | 912 | Region | Note=Dimerization arm |
Tgene | SLC4A1 | chr17:38179384 | chr17:42328700 | ENST00000262418 | - | 17 | 20 | 559_630 | 827 | 912 | Region | Note=Involved in anion transport |
Tgene | SLC4A1 | chr17:38179384 | chr17:42328700 | ENST00000262418 | - | 17 | 20 | 55_290 | 827 | 912 | Region | Note=Globular |
Tgene | SLC4A1 | chr17:38179384 | chr17:42328700 | ENST00000262418 | - | 17 | 20 | 1_403 | 827 | 912 | Topological domain | Cytoplasmic |
Tgene | SLC4A1 | chr17:38179384 | chr17:42328700 | ENST00000262418 | - | 17 | 20 | 428_435 | 827 | 912 | Topological domain | Extracellular |
Tgene | SLC4A1 | chr17:38179384 | chr17:42328700 | ENST00000262418 | - | 17 | 20 | 457_459 | 827 | 912 | Topological domain | Cytoplasmic |
Tgene | SLC4A1 | chr17:38179384 | chr17:42328700 | ENST00000262418 | - | 17 | 20 | 477_485 | 827 | 912 | Topological domain | Extracellular |
Tgene | SLC4A1 | chr17:38179384 | chr17:42328700 | ENST00000262418 | - | 17 | 20 | 507_518 | 827 | 912 | Topological domain | Cytoplasmic |
Tgene | SLC4A1 | chr17:38179384 | chr17:42328700 | ENST00000262418 | - | 17 | 20 | 542_570 | 827 | 912 | Topological domain | Extracellular |
Tgene | SLC4A1 | chr17:38179384 | chr17:42328700 | ENST00000262418 | - | 17 | 20 | 592_602 | 827 | 912 | Topological domain | Cytoplasmic |
Tgene | SLC4A1 | chr17:38179384 | chr17:42328700 | ENST00000262418 | - | 17 | 20 | 624_663 | 827 | 912 | Topological domain | Extracellular |
Tgene | SLC4A1 | chr17:38179384 | chr17:42328700 | ENST00000262418 | - | 17 | 20 | 685_700 | 827 | 912 | Topological domain | Cytoplasmic |
Tgene | SLC4A1 | chr17:38179384 | chr17:42328700 | ENST00000262418 | - | 17 | 20 | 738_760 | 827 | 912 | Topological domain | Cytoplasmic |
Tgene | SLC4A1 | chr17:38179384 | chr17:42328700 | ENST00000262418 | - | 17 | 20 | 801_838 | 827 | 912 | Topological domain | Cytoplasmic |
Tgene | SLC4A1 | chr17:38179384 | chr17:42328700 | ENST00000262418 | - | 17 | 20 | 404_427 | 827 | 912 | Transmembrane | Helical%3B Name%3D1 |
Tgene | SLC4A1 | chr17:38179384 | chr17:42328700 | ENST00000262418 | - | 17 | 20 | 436_456 | 827 | 912 | Transmembrane | Helical%3B Name%3D2 |
Tgene | SLC4A1 | chr17:38179384 | chr17:42328700 | ENST00000262418 | - | 17 | 20 | 460_476 | 827 | 912 | Transmembrane | Discontinuously helical%3B Name%3D3 |
Tgene | SLC4A1 | chr17:38179384 | chr17:42328700 | ENST00000262418 | - | 17 | 20 | 519_541 | 827 | 912 | Transmembrane | Helical%3B Name%3D5 |
Tgene | SLC4A1 | chr17:38179384 | chr17:42328700 | ENST00000262418 | - | 17 | 20 | 571_591 | 827 | 912 | Transmembrane | Helical%3B Name%3D6 |
Tgene | SLC4A1 | chr17:38179384 | chr17:42328700 | ENST00000262418 | - | 17 | 20 | 603_623 | 827 | 912 | Transmembrane | Helical%3B Name%3D7 |
Tgene | SLC4A1 | chr17:38179384 | chr17:42328700 | ENST00000262418 | - | 17 | 20 | 664_684 | 827 | 912 | Transmembrane | Helical%3B Name%3D8 |
Tgene | SLC4A1 | chr17:38179384 | chr17:42328700 | ENST00000262418 | - | 17 | 20 | 701_719 | 827 | 912 | Transmembrane | Helical%3B Name%3D9 |
Tgene | SLC4A1 | chr17:38179384 | chr17:42328700 | ENST00000262418 | - | 17 | 20 | 720_737 | 827 | 912 | Transmembrane | Discontinuously helical%3B Name%3D10 |
Tgene | SLC4A1 | chr17:38179384 | chr17:42328700 | ENST00000262418 | - | 17 | 20 | 761_781 | 827 | 912 | Transmembrane | Helical%3B Name%3D11 |
Tgene | SLC4A1 | chr17:38179384 | chr17:42328700 | ENST00000262418 | - | 17 | 20 | 782_800 | 827 | 912 | Transmembrane | Helical%3B Name%3D12 |
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FusionGeneSequence for MED24_SLC4A1 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_MED24_ENST00000394126_chr17_38179384_-_SLC4A1_ENST00000262418_chr17_42328700_-_860aa MSFSLAPFLSPQSWPPPLPPAQSEIMKVVNLKQAILQAWKERWSDYQWAINMKKFFPKGATWDILNLADALLEQAMIGPSPNPLILSYLK YAISSQMVSYSSVLTAISKFDDFSRDLCVQALLDIMDMFCDRLSCHGKAEECIGLCRALLSALHWLLRCTAASAERLREGLEAGTPAAGE KQLAMCLQRLEKTLSSTKNRALLHIAKLEEASSWTAIEHSLLKLGEILANLSNPQLRSQAEQCGTLIRSIPTMLSVHAEQMHKTGFPTVH AVILLEGTMNLTGETQSLVEQLTMVKRMQHIPTPLFVLEIWKACFVGLIESPEGTEELKWTAFTFLKIPQVLVKLKKYSHGDKDFTEDVN CAFEFLLKLTPLLDKADQRCNCDCTNFLLQECGKQGLLSEASVNNLMAKRKADREHAPQQKSGENANIQPNIQLILRAEPTVTNILKTMD ADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFINLNEFTTYGSEESTKPASVRALLFDISFLMLCHVAQTYGSEVILSE SRTGAEVPFFETWMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNSSEMKLVQMKWHEACLSISAAILEILNAWENGVLAFESIQKI TDNIKGKVCSLAVCAVAWLVAHVRMLGLDEREKSLQMIRQLAGPLFSENTLQFYNERVVIMNSILERMCADVLQQTATQIKFPSTGVDTM PYWNLLPPKRPIKEVLTDIFAKVLEKGWVDSRSIHIFDTLLHMGGVYWFCNNLIKVKTWRMHLFTGIQIICLAVLWVVKSTPASLALPFV >In-frame_MED24_ENST00000501516_chr17_38179384_-_SLC4A1_ENST00000262418_chr17_42328700_-_854aa MKVVNLKQAILQAWKERWSDYQWAINMKKFFPKGATWDILNLADALLEQAMIGPSPNPLILSYLKYAISSQMVSYSSVLTAISKFDDFSR DLCVQALLDIMDMFCDRLSCHGKAEECIGLCRALLSALHWLLRCTAASAERLREGLEAGTPAAGEKQLAMCLQRLEKTLSSTKNRALLHI AKLEEASLHTSQGLGQGGTRANQPTASWTAIEHSLLKLGEILANLSNPQLRSQAEQCGTLIRSIPTMLSVHAEQMHKTGFPTVHAVILLE GTMNLTGETQSLVEQLTMVKRMQHIPTPLFVLEIWKACFVGLIESPEGTEELKWTAFTFLKIPQVLVKLKKYSHGDKDFTEDVNCAFEFL LKLTPLLDKADQRCNCDCTNFLLQECGKQGLLSEASVNNLMAKRKADREHAPQQKSGENANIQPNIQLILRAEPTVTNILKTMDADHSKS PEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFINLNEFTTYGSEESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESRTGAE VPFFETWMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNSSEMKLVQMKWHEACLSISAAILEILNAWENGVLAFESIQKITDNIKG KVCSLAVCAVAWLVAHVRMLGLDEREKSLQMIRQLAGPLFSENTLQFYNERVVIMNSILERMCADVLQQTATQIKFPSTGVDTMPYWNLL PPKRPIKEVLTDIFAKVLEKGWVDSRSIHIFDTLLHMGGVYWFCNNLIKVKTWRMHLFTGIQIICLAVLWVVKSTPASLALPFVLILTVP |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_MED24_ENST00000394126_chr17_38179384_-_SLC4A1_ENST00000262418_chr17_42328700_-_2580nt ATGTCCTTTTCTTTAGCTCCATTTCTTTCACCTCAAAGCTGGCCGCCACCGCTGCCACCTGCTCAGAGTGAAATAATGAAGGTGGTCAAC CTGAAGCAAGCCATTTTGCAAGCCTGGAAGGAGCGCTGGAGTGACTACCAATGGGCAATCAACATGAAGAAATTCTTTCCTAAAGGAGCC ACCTGGGATATTCTCAACCTGGCAGATGCGTTACTAGAGCAGGCCATGATTGGACCATCCCCCAATCCTCTCATCTTGTCCTACCTGAAG TATGCCATTAGTTCCCAGATGGTGTCCTACTCTTCTGTCCTCACAGCCATCAGTAAGTTTGATGACTTTTCTCGGGACCTGTGTGTCCAG GCATTGCTGGACATCATGGACATGTTTTGTGACCGTCTGAGCTGTCACGGCAAAGCAGAGGAATGCATCGGACTGTGCCGAGCCCTTCTT AGCGCCCTCCACTGGCTGCTGCGCTGCACGGCAGCCTCTGCAGAGCGGCTGCGGGAGGGGCTGGAGGCCGGCACTCCAGCCGCTGGGGAG AAGCAGCTTGCCATGTGCCTTCAGCGCCTGGAGAAAACCCTCAGCAGCACCAAGAACCGGGCCCTGCTGCACATCGCCAAACTAGAGGAG GCCTCTTCTTGGACTGCCATCGAGCATTCTCTCTTGAAACTTGGAGAGATCCTGGCCAATCTCAGCAACCCGCAGCTCCGGAGTCAGGCC GAGCAGTGTGGCACCCTCATTAGGAGCATCCCCACGATGCTGTCTGTGCATGCGGAGCAGATGCACAAGACCGGCTTCCCCACTGTCCAC GCCGTGATCCTGCTCGAGGGCACCATGAACCTGACAGGCGAGACGCAGTCCCTGGTGGAGCAGCTGACGATGGTGAAGCGCATGCAGCAT ATCCCCACCCCACTTTTTGTCCTGGAGATCTGGAAAGCTTGCTTCGTGGGGCTCATTGAGTCTCCCGAGGGTACGGAGGAGCTCAAGTGG ACAGCTTTCACTTTCCTCAAGATTCCACAGGTTTTGGTGAAGTTGAAGAAGTACTCTCATGGAGACAAGGACTTCACTGAGGATGTCAAC TGTGCTTTTGAGTTCCTGCTGAAGCTCACCCCCTTGTTGGACAAAGCTGACCAGCGCTGCAACTGTGACTGTACAAACTTCCTGCTCCAA GAATGTGGCAAGCAGGGGCTTCTGTCTGAGGCCAGCGTCAACAACCTTATGGCTAAGCGCAAAGCGGACCGAGAGCACGCACCCCAGCAG AAATCGGGAGAGAATGCCAACATCCAGCCCAACATCCAGCTGATCCTCCGGGCGGAGCCCACTGTCACAAACATCCTCAAGACGATGGAT GCAGACCACTCTAAGTCACCGGAGGGACTGCTGGGAGTCCTGGGCCACATGCTGTCCGGGAAGAGTCTGGACTTGCTGCTGGCTGCCGCC GCCGCCACTGGAAAGCTGAAATCCTTCGCCCGGAAATTCATCAATTTGAATGAATTCACAACCTATGGCAGCGAAGAAAGCACCAAACCG GCCTCCGTCCGGGCCCTGCTGTTTGACATCTCCTTCCTCATGCTGTGCCATGTGGCCCAGACCTATGGTTCAGAGGTGATTCTGTCCGAG TCGCGCACAGGAGCTGAGGTGCCCTTCTTCGAGACCTGGATGCAGACCTGCATGCCTGAGGAGGGCAAGATCCTGAACCCTGACCACCCC TGCTTCCGCCCCGACTCCACCAAAGTGGAGTCCCTGGTGGCCCTGCTCAACAACTCCTCGGAGATGAAGCTAGTGCAGATGAAGTGGCAT GAGGCCTGTCTCAGCATCTCAGCCGCCATCTTGGAAATCCTCAATGCCTGGGAGAATGGGGTCCTGGCCTTCGAGTCCATCCAGAAAATC ACTGATAACATCAAAGGGAAGGTATGCAGTCTGGCGGTGTGTGCTGTGGCTTGGCTTGTGGCCCACGTCCGGATGCTGGGGCTGGATGAG CGTGAGAAGTCGCTGCAGATGATCCGCCAGCTGGCAGGGCCACTGTTTAGTGAGAACACCCTGCAGTTCTACAATGAGAGGGTGGTGATC ATGAACTCGATCCTGGAGCGCATGTGTGCCGACGTGCTGCAGCAGACAGCCACGCAGATCAAGTTTCCCTCCACCGGGGTGGACACAATG CCCTACTGGAACCTGCTGCCCCCCAAGCGGCCCATCAAAGAGGTGCTGACGGACATTTTTGCCAAGGTGCTGGAGAAGGGCTGGGTGGAC AGCCGCTCCATCCACATCTTTGACACCCTGCTGCACATGGGCGGCGTCTACTGGTTCTGCAACAACCTGATTAAGGTGAAGACCTGGCGC ATGCACTTATTCACGGGCATCCAGATCATCTGCCTGGCAGTGCTGTGGGTGGTGAAGTCCACGCCGGCCTCCCTGGCCCTGCCCTTCGTC CTCATCCTCACTGTGCCGCTGCGGCGCGTCCTGCTGCCGCTCATCTTCAGGAACGTGGAGCTTCAGTGTCTGGATGCTGATGATGCCAAG >In-frame_MED24_ENST00000501516_chr17_38179384_-_SLC4A1_ENST00000262418_chr17_42328700_-_2562nt ATGAAGGTGGTCAACCTGAAGCAAGCCATTTTGCAAGCCTGGAAGGAGCGCTGGAGTGACTACCAATGGGCAATCAACATGAAGAAATTC TTTCCTAAAGGAGCCACCTGGGATATTCTCAACCTGGCAGATGCGTTACTAGAGCAGGCCATGATTGGACCATCCCCCAATCCTCTCATC TTGTCCTACCTGAAGTATGCCATTAGTTCCCAGATGGTGTCCTACTCTTCTGTCCTCACAGCCATCAGTAAGTTTGATGACTTTTCTCGG GACCTGTGTGTCCAGGCATTGCTGGACATCATGGACATGTTTTGTGACCGTCTGAGCTGTCACGGCAAAGCAGAGGAATGCATCGGACTG TGCCGAGCCCTTCTTAGCGCCCTCCACTGGCTGCTGCGCTGCACGGCAGCCTCTGCAGAGCGGCTGCGGGAGGGGCTGGAGGCCGGCACT CCAGCCGCTGGGGAGAAGCAGCTTGCCATGTGCCTTCAGCGCCTGGAGAAAACCCTCAGCAGCACCAAGAACCGGGCCCTGCTGCACATC GCCAAACTAGAGGAGGCCTCATTGCACACATCCCAGGGACTTGGGCAGGGTGGCACCCGAGCCAATCAACCAACAGCTTCTTGGACTGCC ATCGAGCATTCTCTCTTGAAACTTGGAGAGATCCTGGCCAATCTCAGCAACCCGCAGCTCCGGAGTCAGGCCGAGCAGTGTGGCACCCTC ATTAGGAGCATCCCCACGATGCTGTCTGTGCATGCGGAGCAGATGCACAAGACCGGCTTCCCCACTGTCCACGCCGTGATCCTGCTCGAG GGCACCATGAACCTGACAGGCGAGACGCAGTCCCTGGTGGAGCAGCTGACGATGGTGAAGCGCATGCAGCATATCCCCACCCCACTTTTT GTCCTGGAGATCTGGAAAGCTTGCTTCGTGGGGCTCATTGAGTCTCCCGAGGGTACGGAGGAGCTCAAGTGGACAGCTTTCACTTTCCTC AAGATTCCACAGGTTTTGGTGAAGTTGAAGAAGTACTCTCATGGAGACAAGGACTTCACTGAGGATGTCAACTGTGCTTTTGAGTTCCTG CTGAAGCTCACCCCCTTGTTGGACAAAGCTGACCAGCGCTGCAACTGTGACTGTACAAACTTCCTGCTCCAAGAATGTGGCAAGCAGGGG CTTCTGTCTGAGGCCAGCGTCAACAACCTTATGGCTAAGCGCAAAGCGGACCGAGAGCACGCACCCCAGCAGAAATCGGGAGAGAATGCC AACATCCAGCCCAACATCCAGCTGATCCTCCGGGCGGAGCCCACTGTCACAAACATCCTCAAGACGATGGATGCAGACCACTCTAAGTCA CCGGAGGGACTGCTGGGAGTCCTGGGCCACATGCTGTCCGGGAAGAGTCTGGACTTGCTGCTGGCTGCCGCCGCCGCCACTGGAAAGCTG AAATCCTTCGCCCGGAAATTCATCAATTTGAATGAATTCACAACCTATGGCAGCGAAGAAAGCACCAAACCGGCCTCCGTCCGGGCCCTG CTGTTTGACATCTCCTTCCTCATGCTGTGCCATGTGGCCCAGACCTATGGTTCAGAGGTGATTCTGTCCGAGTCGCGCACAGGAGCTGAG GTGCCCTTCTTCGAGACCTGGATGCAGACCTGCATGCCTGAGGAGGGCAAGATCCTGAACCCTGACCACCCCTGCTTCCGCCCCGACTCC ACCAAAGTGGAGTCCCTGGTGGCCCTGCTCAACAACTCCTCGGAGATGAAGCTAGTGCAGATGAAGTGGCATGAGGCCTGTCTCAGCATC TCAGCCGCCATCTTGGAAATCCTCAATGCCTGGGAGAATGGGGTCCTGGCCTTCGAGTCCATCCAGAAAATCACTGATAACATCAAAGGG AAGGTATGCAGTCTGGCGGTGTGTGCTGTGGCTTGGCTTGTGGCCCACGTCCGGATGCTGGGGCTGGATGAGCGTGAGAAGTCGCTGCAG ATGATCCGCCAGCTGGCAGGGCCACTGTTTAGTGAGAACACCCTGCAGTTCTACAATGAGAGGGTGGTGATCATGAACTCGATCCTGGAG CGCATGTGTGCCGACGTGCTGCAGCAGACAGCCACGCAGATCAAGTTTCCCTCCACCGGGGTGGACACAATGCCCTACTGGAACCTGCTG CCCCCCAAGCGGCCCATCAAAGAGGTGCTGACGGACATTTTTGCCAAGGTGCTGGAGAAGGGCTGGGTGGACAGCCGCTCCATCCACATC TTTGACACCCTGCTGCACATGGGCGGCGTCTACTGGTTCTGCAACAACCTGATTAAGGTGAAGACCTGGCGCATGCACTTATTCACGGGC ATCCAGATCATCTGCCTGGCAGTGCTGTGGGTGGTGAAGTCCACGCCGGCCTCCCTGGCCCTGCCCTTCGTCCTCATCCTCACTGTGCCG CTGCGGCGCGTCCTGCTGCCGCTCATCTTCAGGAACGTGGAGCTTCAGTGTCTGGATGCTGATGATGCCAAGGCAACCTTTGATGAGGAG |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_MED24_ENST00000394126_chr17_38179384_-_SLC4A1_ENST00000262418_chr17_42328700_-_5072nt GGTGCGATCTCGGCTCACCCCAACAACCTCCGCCTCCCGGGTTCAAGCGATTCTACTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGC ATGCACCACCAAGCCCGGCTAATTTTGTATTTTTAGTGGAGACGAGGTTTCTCCATGTTGGTCAGGCTAGTCTCGAACTCCTGACCTCCG GTGATTCGCCCGCCTCTGCCTCCCGAAGTGCTGGGATTACAGGTGCGAGCCACTGCGCTCGGCCGATACTTTCTTAGTGCCCCAGTTTAA GGAAGGGCGGTTCAGGAGGAGAGAGTCTGACAGGATCTTACTTTATCCCTTTAGCTCTTTTTCTTTCAAATTCCTCTGTCTCGCTTAAAT CTTCCCGCATCTTCTCCTTTCTATTTAATTCTGCCTTCCCCGGTTCTCCTTAGAACCTCATGTCCTTTTCTTTAGCTCCATTTCTTTCAC CTCAAAGCTGGCCGCCACCGCTGCCACCTGCTCAGAGTGAAATAATGAAGGTGGTCAACCTGAAGCAAGCCATTTTGCAAGCCTGGAAGG AGCGCTGGAGTGACTACCAATGGGCAATCAACATGAAGAAATTCTTTCCTAAAGGAGCCACCTGGGATATTCTCAACCTGGCAGATGCGT TACTAGAGCAGGCCATGATTGGACCATCCCCCAATCCTCTCATCTTGTCCTACCTGAAGTATGCCATTAGTTCCCAGATGGTGTCCTACT CTTCTGTCCTCACAGCCATCAGTAAGTTTGATGACTTTTCTCGGGACCTGTGTGTCCAGGCATTGCTGGACATCATGGACATGTTTTGTG ACCGTCTGAGCTGTCACGGCAAAGCAGAGGAATGCATCGGACTGTGCCGAGCCCTTCTTAGCGCCCTCCACTGGCTGCTGCGCTGCACGG CAGCCTCTGCAGAGCGGCTGCGGGAGGGGCTGGAGGCCGGCACTCCAGCCGCTGGGGAGAAGCAGCTTGCCATGTGCCTTCAGCGCCTGG AGAAAACCCTCAGCAGCACCAAGAACCGGGCCCTGCTGCACATCGCCAAACTAGAGGAGGCCTCTTCTTGGACTGCCATCGAGCATTCTC TCTTGAAACTTGGAGAGATCCTGGCCAATCTCAGCAACCCGCAGCTCCGGAGTCAGGCCGAGCAGTGTGGCACCCTCATTAGGAGCATCC CCACGATGCTGTCTGTGCATGCGGAGCAGATGCACAAGACCGGCTTCCCCACTGTCCACGCCGTGATCCTGCTCGAGGGCACCATGAACC TGACAGGCGAGACGCAGTCCCTGGTGGAGCAGCTGACGATGGTGAAGCGCATGCAGCATATCCCCACCCCACTTTTTGTCCTGGAGATCT GGAAAGCTTGCTTCGTGGGGCTCATTGAGTCTCCCGAGGGTACGGAGGAGCTCAAGTGGACAGCTTTCACTTTCCTCAAGATTCCACAGG TTTTGGTGAAGTTGAAGAAGTACTCTCATGGAGACAAGGACTTCACTGAGGATGTCAACTGTGCTTTTGAGTTCCTGCTGAAGCTCACCC CCTTGTTGGACAAAGCTGACCAGCGCTGCAACTGTGACTGTACAAACTTCCTGCTCCAAGAATGTGGCAAGCAGGGGCTTCTGTCTGAGG CCAGCGTCAACAACCTTATGGCTAAGCGCAAAGCGGACCGAGAGCACGCACCCCAGCAGAAATCGGGAGAGAATGCCAACATCCAGCCCA ACATCCAGCTGATCCTCCGGGCGGAGCCCACTGTCACAAACATCCTCAAGACGATGGATGCAGACCACTCTAAGTCACCGGAGGGACTGC TGGGAGTCCTGGGCCACATGCTGTCCGGGAAGAGTCTGGACTTGCTGCTGGCTGCCGCCGCCGCCACTGGAAAGCTGAAATCCTTCGCCC GGAAATTCATCAATTTGAATGAATTCACAACCTATGGCAGCGAAGAAAGCACCAAACCGGCCTCCGTCCGGGCCCTGCTGTTTGACATCT CCTTCCTCATGCTGTGCCATGTGGCCCAGACCTATGGTTCAGAGGTGATTCTGTCCGAGTCGCGCACAGGAGCTGAGGTGCCCTTCTTCG AGACCTGGATGCAGACCTGCATGCCTGAGGAGGGCAAGATCCTGAACCCTGACCACCCCTGCTTCCGCCCCGACTCCACCAAAGTGGAGT CCCTGGTGGCCCTGCTCAACAACTCCTCGGAGATGAAGCTAGTGCAGATGAAGTGGCATGAGGCCTGTCTCAGCATCTCAGCCGCCATCT TGGAAATCCTCAATGCCTGGGAGAATGGGGTCCTGGCCTTCGAGTCCATCCAGAAAATCACTGATAACATCAAAGGGAAGGTATGCAGTC TGGCGGTGTGTGCTGTGGCTTGGCTTGTGGCCCACGTCCGGATGCTGGGGCTGGATGAGCGTGAGAAGTCGCTGCAGATGATCCGCCAGC TGGCAGGGCCACTGTTTAGTGAGAACACCCTGCAGTTCTACAATGAGAGGGTGGTGATCATGAACTCGATCCTGGAGCGCATGTGTGCCG ACGTGCTGCAGCAGACAGCCACGCAGATCAAGTTTCCCTCCACCGGGGTGGACACAATGCCCTACTGGAACCTGCTGCCCCCCAAGCGGC CCATCAAAGAGGTGCTGACGGACATTTTTGCCAAGGTGCTGGAGAAGGGCTGGGTGGACAGCCGCTCCATCCACATCTTTGACACCCTGC TGCACATGGGCGGCGTCTACTGGTTCTGCAACAACCTGATTAAGGTGAAGACCTGGCGCATGCACTTATTCACGGGCATCCAGATCATCT GCCTGGCAGTGCTGTGGGTGGTGAAGTCCACGCCGGCCTCCCTGGCCCTGCCCTTCGTCCTCATCCTCACTGTGCCGCTGCGGCGCGTCC TGCTGCCGCTCATCTTCAGGAACGTGGAGCTTCAGTGTCTGGATGCTGATGATGCCAAGGCAACCTTTGATGAGGAGGAAGGTCGGGATG AATACGACGAAGTGGCCATGCCTGTGTGAGGGGCGGGCCCAGGCCCTAGACCCTCCCCCACCATTCCACATCCCCACCTTCCAAGGAAAA GCAGAAGTTCATGGGCACCTCATGGACTCCAGGATCCTCCTGGAGCAGCAGCTGAGGCCCCAGGGCTGTGGGTGGGGAAGGAAGGCGTGT CCAGGAGACCTTCCACAAAGGGTAGCCTGGCTTTTCTGGCTGGGGATGGCCGATGGGGCCCACATTAGGGGGTTTGTTGCACAGTCCCTC CTGTTGCCACACTTTCACTGGGGATCCCGTGCTGGAAGACTTAGATCTGAGCCCTCCCTCTTCCCAGCACAGGCAGGGGTAGAAGCAAAG GCAGGAGGTGGGTGAGCGGGTGGGGTGCTTGCTGTGTGACCTTGGGCAAGTCCCTTGACCTTTCCAGCCTATATTTCCTCTTCTGTAAAA TGGGTATATTGATGATAATACCCACATTACAGGATGGTTACTGAGGACCAAAGATACATGTAAAATAGGGCTTTGTAAACTCCACAGGGA CTGTTCTATAGCAGTCATCATTTGTCTTTGAACGTACCCAAGGTCACATAGCTGGGATTTGAACTGAGCCGTGCAGCTGGGATTTGAACC AGGCCTTCTGATTTCAAGGTCCGAGCTCTGTCCTCTGTCAGTCATGCGTCCACTTTCCCTTCCCCTGTGACTCCTCCCTTCCCCACTCTG CTCCCAGCCCCTACCTTGAGACCCTCTTCTCTGGGCCCAGAGAGAGGCGTCCTGGTGAGGACAAGGTACAGGCAAGGATGATCCAGGGAT TGGGCCTGGGACTCAGGCCTCCTAAGTGTTTGGTTCCTCCCTCCAAACACTCATTAGTTCACTCATTCATTCATTCCACAAACATTTACT GAGGGCCCCGGAATCAGTGGACTCCGAGGGGACTGAGACAAGCCCTGCCCTGGGGTGGGGGTGGGGGGCAAGGTACAGTTGATTCTACAT TTGGATAGGGAGTGGGGGAGGGTGGGAAGGTAGGGGCGGGAGAGTGAGGGGGTTTGTAATTTATTAATTGCGTATTTTCTAAGAGTTTTC AACATAGTTTGGCTTCACACACAACTTCAGGCCCCTCATTTGAGAGCCATTATCCTCAACTCCATCTAAACTGAATCTTGGGGAGAACCC AGATCTGACCAATTGGGGTAGGAGACAGCAGGCTCTCCAAGAACATGGGCAAATTTATTTTTTTATAAAACAAAAAGATAAAAAGAGTTG AAAGACGTGAAAGTGGTGAGAGATGGAGGAAACAGAATCAGGAAGTGGTAGAAAAGAGAGGAGGTGGCTGGGCGCAGTGGCTCACGTTTG TAATCCCAGCACTTTGGGAGGCCAAGTTGGGCGGATCATTTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCCGTTA CTACTAAAAATACAAAAATTAGCTGGGTGTCTCGTGGCAGGCACCTGTAATCCCAGCTACTTAGAAGGCTGAGGCAAGAGAATCACCTGA ACCCAGGAGGTGGAGGTTGCAGTGAGCCAAGATTGCACCACTGCACTCCAGCCTGGGCAACAGAGCGAGACCCTGTCTCAAAAAAAAAAA AAAAAAAAAAAAAAAAACGGAAGGAAACATCAGCCTTGGGGGCCACAGACTCAACATGTGTGTGTGGTGGGGTTCCAGCCCAACATAGAG TAACATTATTTGTACCTCCCAGGCTAGCTCAGTCCATGGGAGGCTCTCCTGTCCCTGAAAGCTGACACCCACCTTTCACCACTTCGCCCA TGCTACAGTTCAGTTTCCTCGTCTGTAAAATGGGGATGATAATGGTACCTACCTTGCAGTGTTGTTATAAGGATTAAAGGAGACAGTGCA AGAAAAGGCCTTGGTTGGTGAAGAGCCCAACCTCGGAGGGGAGCTGCTGGGATCCTCCTTATCTTGACTGGGATGTCCCTGTCTCCCCCT CCCCTTGCTCCTTGAACATGGCCAAGGAAAGTGAAAAACAAAAATTATTCACTCTGCTAGCACCCTTCCCCTTGATGCCTGGGAATAGGT >In-frame_MED24_ENST00000501516_chr17_38179384_-_SLC4A1_ENST00000262418_chr17_42328700_-_4645nt GAGTGAAATAATGAAGGTGGTCAACCTGAAGCAAGCCATTTTGCAAGCCTGGAAGGAGCGCTGGAGTGACTACCAATGGGCAATCAACAT GAAGAAATTCTTTCCTAAAGGAGCCACCTGGGATATTCTCAACCTGGCAGATGCGTTACTAGAGCAGGCCATGATTGGACCATCCCCCAA TCCTCTCATCTTGTCCTACCTGAAGTATGCCATTAGTTCCCAGATGGTGTCCTACTCTTCTGTCCTCACAGCCATCAGTAAGTTTGATGA CTTTTCTCGGGACCTGTGTGTCCAGGCATTGCTGGACATCATGGACATGTTTTGTGACCGTCTGAGCTGTCACGGCAAAGCAGAGGAATG CATCGGACTGTGCCGAGCCCTTCTTAGCGCCCTCCACTGGCTGCTGCGCTGCACGGCAGCCTCTGCAGAGCGGCTGCGGGAGGGGCTGGA GGCCGGCACTCCAGCCGCTGGGGAGAAGCAGCTTGCCATGTGCCTTCAGCGCCTGGAGAAAACCCTCAGCAGCACCAAGAACCGGGCCCT GCTGCACATCGCCAAACTAGAGGAGGCCTCATTGCACACATCCCAGGGACTTGGGCAGGGTGGCACCCGAGCCAATCAACCAACAGCTTC TTGGACTGCCATCGAGCATTCTCTCTTGAAACTTGGAGAGATCCTGGCCAATCTCAGCAACCCGCAGCTCCGGAGTCAGGCCGAGCAGTG TGGCACCCTCATTAGGAGCATCCCCACGATGCTGTCTGTGCATGCGGAGCAGATGCACAAGACCGGCTTCCCCACTGTCCACGCCGTGAT CCTGCTCGAGGGCACCATGAACCTGACAGGCGAGACGCAGTCCCTGGTGGAGCAGCTGACGATGGTGAAGCGCATGCAGCATATCCCCAC CCCACTTTTTGTCCTGGAGATCTGGAAAGCTTGCTTCGTGGGGCTCATTGAGTCTCCCGAGGGTACGGAGGAGCTCAAGTGGACAGCTTT CACTTTCCTCAAGATTCCACAGGTTTTGGTGAAGTTGAAGAAGTACTCTCATGGAGACAAGGACTTCACTGAGGATGTCAACTGTGCTTT TGAGTTCCTGCTGAAGCTCACCCCCTTGTTGGACAAAGCTGACCAGCGCTGCAACTGTGACTGTACAAACTTCCTGCTCCAAGAATGTGG CAAGCAGGGGCTTCTGTCTGAGGCCAGCGTCAACAACCTTATGGCTAAGCGCAAAGCGGACCGAGAGCACGCACCCCAGCAGAAATCGGG AGAGAATGCCAACATCCAGCCCAACATCCAGCTGATCCTCCGGGCGGAGCCCACTGTCACAAACATCCTCAAGACGATGGATGCAGACCA CTCTAAGTCACCGGAGGGACTGCTGGGAGTCCTGGGCCACATGCTGTCCGGGAAGAGTCTGGACTTGCTGCTGGCTGCCGCCGCCGCCAC TGGAAAGCTGAAATCCTTCGCCCGGAAATTCATCAATTTGAATGAATTCACAACCTATGGCAGCGAAGAAAGCACCAAACCGGCCTCCGT CCGGGCCCTGCTGTTTGACATCTCCTTCCTCATGCTGTGCCATGTGGCCCAGACCTATGGTTCAGAGGTGATTCTGTCCGAGTCGCGCAC AGGAGCTGAGGTGCCCTTCTTCGAGACCTGGATGCAGACCTGCATGCCTGAGGAGGGCAAGATCCTGAACCCTGACCACCCCTGCTTCCG CCCCGACTCCACCAAAGTGGAGTCCCTGGTGGCCCTGCTCAACAACTCCTCGGAGATGAAGCTAGTGCAGATGAAGTGGCATGAGGCCTG TCTCAGCATCTCAGCCGCCATCTTGGAAATCCTCAATGCCTGGGAGAATGGGGTCCTGGCCTTCGAGTCCATCCAGAAAATCACTGATAA CATCAAAGGGAAGGTATGCAGTCTGGCGGTGTGTGCTGTGGCTTGGCTTGTGGCCCACGTCCGGATGCTGGGGCTGGATGAGCGTGAGAA GTCGCTGCAGATGATCCGCCAGCTGGCAGGGCCACTGTTTAGTGAGAACACCCTGCAGTTCTACAATGAGAGGGTGGTGATCATGAACTC GATCCTGGAGCGCATGTGTGCCGACGTGCTGCAGCAGACAGCCACGCAGATCAAGTTTCCCTCCACCGGGGTGGACACAATGCCCTACTG GAACCTGCTGCCCCCCAAGCGGCCCATCAAAGAGGTGCTGACGGACATTTTTGCCAAGGTGCTGGAGAAGGGCTGGGTGGACAGCCGCTC CATCCACATCTTTGACACCCTGCTGCACATGGGCGGCGTCTACTGGTTCTGCAACAACCTGATTAAGGTGAAGACCTGGCGCATGCACTT ATTCACGGGCATCCAGATCATCTGCCTGGCAGTGCTGTGGGTGGTGAAGTCCACGCCGGCCTCCCTGGCCCTGCCCTTCGTCCTCATCCT CACTGTGCCGCTGCGGCGCGTCCTGCTGCCGCTCATCTTCAGGAACGTGGAGCTTCAGTGTCTGGATGCTGATGATGCCAAGGCAACCTT TGATGAGGAGGAAGGTCGGGATGAATACGACGAAGTGGCCATGCCTGTGTGAGGGGCGGGCCCAGGCCCTAGACCCTCCCCCACCATTCC ACATCCCCACCTTCCAAGGAAAAGCAGAAGTTCATGGGCACCTCATGGACTCCAGGATCCTCCTGGAGCAGCAGCTGAGGCCCCAGGGCT GTGGGTGGGGAAGGAAGGCGTGTCCAGGAGACCTTCCACAAAGGGTAGCCTGGCTTTTCTGGCTGGGGATGGCCGATGGGGCCCACATTA GGGGGTTTGTTGCACAGTCCCTCCTGTTGCCACACTTTCACTGGGGATCCCGTGCTGGAAGACTTAGATCTGAGCCCTCCCTCTTCCCAG CACAGGCAGGGGTAGAAGCAAAGGCAGGAGGTGGGTGAGCGGGTGGGGTGCTTGCTGTGTGACCTTGGGCAAGTCCCTTGACCTTTCCAG CCTATATTTCCTCTTCTGTAAAATGGGTATATTGATGATAATACCCACATTACAGGATGGTTACTGAGGACCAAAGATACATGTAAAATA GGGCTTTGTAAACTCCACAGGGACTGTTCTATAGCAGTCATCATTTGTCTTTGAACGTACCCAAGGTCACATAGCTGGGATTTGAACTGA GCCGTGCAGCTGGGATTTGAACCAGGCCTTCTGATTTCAAGGTCCGAGCTCTGTCCTCTGTCAGTCATGCGTCCACTTTCCCTTCCCCTG TGACTCCTCCCTTCCCCACTCTGCTCCCAGCCCCTACCTTGAGACCCTCTTCTCTGGGCCCAGAGAGAGGCGTCCTGGTGAGGACAAGGT ACAGGCAAGGATGATCCAGGGATTGGGCCTGGGACTCAGGCCTCCTAAGTGTTTGGTTCCTCCCTCCAAACACTCATTAGTTCACTCATT CATTCATTCCACAAACATTTACTGAGGGCCCCGGAATCAGTGGACTCCGAGGGGACTGAGACAAGCCCTGCCCTGGGGTGGGGGTGGGGG GCAAGGTACAGTTGATTCTACATTTGGATAGGGAGTGGGGGAGGGTGGGAAGGTAGGGGCGGGAGAGTGAGGGGGTTTGTAATTTATTAA TTGCGTATTTTCTAAGAGTTTTCAACATAGTTTGGCTTCACACACAACTTCAGGCCCCTCATTTGAGAGCCATTATCCTCAACTCCATCT AAACTGAATCTTGGGGAGAACCCAGATCTGACCAATTGGGGTAGGAGACAGCAGGCTCTCCAAGAACATGGGCAAATTTATTTTTTTATA AAACAAAAAGATAAAAAGAGTTGAAAGACGTGAAAGTGGTGAGAGATGGAGGAAACAGAATCAGGAAGTGGTAGAAAAGAGAGGAGGTGG CTGGGCGCAGTGGCTCACGTTTGTAATCCCAGCACTTTGGGAGGCCAAGTTGGGCGGATCATTTGAGGTCAGGAGTTTGAGACCAGCCTG GCCAACATGGTGAAACCCCGTTACTACTAAAAATACAAAAATTAGCTGGGTGTCTCGTGGCAGGCACCTGTAATCCCAGCTACTTAGAAG GCTGAGGCAAGAGAATCACCTGAACCCAGGAGGTGGAGGTTGCAGTGAGCCAAGATTGCACCACTGCACTCCAGCCTGGGCAACAGAGCG AGACCCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAACGGAAGGAAACATCAGCCTTGGGGGCCACAGACTCAACATGTGTGTGTGG TGGGGTTCCAGCCCAACATAGAGTAACATTATTTGTACCTCCCAGGCTAGCTCAGTCCATGGGAGGCTCTCCTGTCCCTGAAAGCTGACA CCCACCTTTCACCACTTCGCCCATGCTACAGTTCAGTTTCCTCGTCTGTAAAATGGGGATGATAATGGTACCTACCTTGCAGTGTTGTTA TAAGGATTAAAGGAGACAGTGCAAGAAAAGGCCTTGGTTGGTGAAGAGCCCAACCTCGGAGGGGAGCTGCTGGGATCCTCCTTATCTTGA CTGGGATGTCCCTGTCTCCCCCTCCCCTTGCTCCTTGAACATGGCCAAGGAAAGTGAAAAACAAAAATTATTCACTCTGCTAGCACCCTT |
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FusionGenePPI for MED24_SLC4A1 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
MED24 | MED10, MED9, MED29, MED19, MED28, MED26, CDK8, THRA, VDR, PPARA, PPARG, RXRA, MED1, HNF4A, ESR1, ESR2, MED30, BRD4, RPAP2, AR, PARP1, SMAD1, SMAD2, SMAD3, TRRAP, SREBF1, MED12, MED18, ZC3H13, TRIP4, OBFC1, QKI, TRA, MED14, GSK3B, TNFSF11, RPS6KA6, CTDP1, APP, MED13, MED8, MED16, MED17, MED4, MED11, MED21, MED22, PPP6R1, TFIP11, FBXW7, EPAS1, CDK19, MED7, CCNC, NR1I3, TCL1B, MED15, MED20, MED23, MED6, MED25, MED27, KPNB1, XRCC3, EMC2, PPP4R1, ZWINT, KIFAP3, MMGT1, SUCO, LMO2 | SLC4A1 | SLC4A1AP, SLC4A1, CA2, CA4, ANK1, EPB42, CANX, SYK, CLU, HBA1, CDKN2A, KAT2B |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Tgene | SLC4A1 | chr17:38179384 | chr17:42328700 | ENST00000262418 | - | 17 | 20 | 176_185 | 827 | 912 | ANK1 |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for MED24_SLC4A1 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for MED24_SLC4A1 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | SLC4A1 | C2675212 | Spherocytosis, Type 4 | 16 | CTD_human;UNIPROT |
Tgene | SLC4A1 | C1704380 | Distal Renal Tubular Acidosis | 5 | HPO;ORPHANET;UNIPROT |
Tgene | SLC4A1 | C1969038 | RENAL TUBULAR ACIDOSIS, DISTAL, WITH HEMOLYTIC ANEMIA (disorder) | 4 | CTD_human;ORPHANET;UNIPROT |
Tgene | SLC4A1 | C0001126 | Renal tubular acidosis | 2 | CTD_human;HPO |
Tgene | SLC4A1 | C0002878 | Anemia, Hemolytic | 1 | CTD_human;HPO |
Tgene | SLC4A1 | C0013902 | Elliptocytosis, Hereditary | 1 | CTD_human;HPO |
Tgene | SLC4A1 | C0018939 | Hematological Disease | 1 | CTD_human |
Tgene | SLC4A1 | C0037889 | Hereditary spherocytosis | 1 | CTD_human;ORPHANET |
Tgene | SLC4A1 | C1861453 | Pseudohyperkalemia Cardiff | 1 | ORPHANET;UNIPROT |