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Fusion gene ID: 21048 |
FusionGeneSummary for MAPKBP1_VPS39 |
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Fusion gene information | Fusion gene name: MAPKBP1_VPS39 | Fusion gene ID: 21048 | Hgene | Tgene | Gene symbol | MAPKBP1 | VPS39 | Gene ID | 23005 | 23339 |
Gene name | mitogen-activated protein kinase binding protein 1 | VPS39, HOPS complex subunit | |
Synonyms | JNKBP-1|JNKBP1|NPHP20 | TLP|VAM6|hVam6p | |
Cytomap | 15q15.1 | 15q15.1 | |
Type of gene | protein-coding | protein-coding | |
Description | mitogen-activated protein kinase-binding protein 1JNK-binding protein 1 | vam6/Vps39-like proteinTRAP1-like proteinvacuolar protein sorting 39 homolog | |
Modification date | 20180519 | 20180523 | |
UniProtAcc | O60336 | Q96JC1 | |
Ensembl transtripts involved in fusion gene | ENST00000221214, ENST00000457542, ENST00000260357, ENST00000456763, ENST00000514566, ENST00000507762, | ENST00000318006, ENST00000348544, ENST00000568357, | |
Fusion gene scores | * DoF score | 7 X 4 X 3=84 | 6 X 6 X 4=144 |
# samples | 6 | 6 | |
** MAII score | log2(6/84*10)=-0.485426827170242 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(6/144*10)=-1.26303440583379 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: MAPKBP1 [Title/Abstract] AND VPS39 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | VPS39 | GO:0034058 | endosomal vesicle fusion | 23167963 |
Tgene | VPS39 | GO:1902774 | late endosome to lysosome transport | 23167963 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | BLCA | TCGA-XF-AAMX-01A | MAPKBP1 | chr15 | 42092112 | + | VPS39 | chr15 | 42455926 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000221214 | ENST00000318006 | MAPKBP1 | chr15 | 42092112 | + | VPS39 | chr15 | 42455926 | - |
Frame-shift | ENST00000221214 | ENST00000348544 | MAPKBP1 | chr15 | 42092112 | + | VPS39 | chr15 | 42455926 | - |
5CDS-intron | ENST00000221214 | ENST00000568357 | MAPKBP1 | chr15 | 42092112 | + | VPS39 | chr15 | 42455926 | - |
Frame-shift | ENST00000457542 | ENST00000318006 | MAPKBP1 | chr15 | 42092112 | + | VPS39 | chr15 | 42455926 | - |
Frame-shift | ENST00000457542 | ENST00000348544 | MAPKBP1 | chr15 | 42092112 | + | VPS39 | chr15 | 42455926 | - |
5CDS-intron | ENST00000457542 | ENST00000568357 | MAPKBP1 | chr15 | 42092112 | + | VPS39 | chr15 | 42455926 | - |
intron-3CDS | ENST00000260357 | ENST00000318006 | MAPKBP1 | chr15 | 42092112 | + | VPS39 | chr15 | 42455926 | - |
intron-3CDS | ENST00000260357 | ENST00000348544 | MAPKBP1 | chr15 | 42092112 | + | VPS39 | chr15 | 42455926 | - |
intron-intron | ENST00000260357 | ENST00000568357 | MAPKBP1 | chr15 | 42092112 | + | VPS39 | chr15 | 42455926 | - |
Frame-shift | ENST00000456763 | ENST00000318006 | MAPKBP1 | chr15 | 42092112 | + | VPS39 | chr15 | 42455926 | - |
Frame-shift | ENST00000456763 | ENST00000348544 | MAPKBP1 | chr15 | 42092112 | + | VPS39 | chr15 | 42455926 | - |
5CDS-intron | ENST00000456763 | ENST00000568357 | MAPKBP1 | chr15 | 42092112 | + | VPS39 | chr15 | 42455926 | - |
Frame-shift | ENST00000514566 | ENST00000318006 | MAPKBP1 | chr15 | 42092112 | + | VPS39 | chr15 | 42455926 | - |
Frame-shift | ENST00000514566 | ENST00000348544 | MAPKBP1 | chr15 | 42092112 | + | VPS39 | chr15 | 42455926 | - |
5CDS-intron | ENST00000514566 | ENST00000568357 | MAPKBP1 | chr15 | 42092112 | + | VPS39 | chr15 | 42455926 | - |
3UTR-3CDS | ENST00000507762 | ENST00000318006 | MAPKBP1 | chr15 | 42092112 | + | VPS39 | chr15 | 42455926 | - |
3UTR-3CDS | ENST00000507762 | ENST00000348544 | MAPKBP1 | chr15 | 42092112 | + | VPS39 | chr15 | 42455926 | - |
3UTR-intron | ENST00000507762 | ENST00000568357 | MAPKBP1 | chr15 | 42092112 | + | VPS39 | chr15 | 42455926 | - |
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FusionProtFeatures for MAPKBP1_VPS39 |
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Hgene | Tgene |
MAPKBP1 | VPS39 |
Negative regulator of NOD2 function. It down-regulatesNOD2-induced processes such as activation of NF-kappa-B signaling,IL8 secretion and antibacterial response (PubMed:22700971).Involved in JNK signaling pathway (By similarity).{ECO:0000250|UniProtKB:Q6NS57, ECO:0000269|PubMed:22700971}. | Regulator of TGF-beta/activin signaling, inhibitingSMAD3- and activating SMAD2-dependent transcription. Acts byinterfering with SMAD3/SMAD4 complex formation, this would lead toinhibition of SMAD3-dependent transcription and relieve SMAD3inhibition of SMAD2-dependent promoters, thus increasing SMAD2-dependent transcription. Does not affect TGF-beta-induced SMAD2 orSMAD3 phosphorylation, nor SMAD2/SMAD4 complex formation.{ECO:0000269|PubMed:12941698}. Plays a role in vesicle-mediated protein trafficking tolysosomal compartments including the endocytic membrane transportand autophagic pathways. Believed to act in part as a component ofthe putative HOPS endosomal tethering complex which is proposed tobe involved in the Rab5-to-Rab7 endosome conversion probablyimplicating MON1A/B, and via binding SNAREs and SNARE complexes tomediate tethering and docking events during SNARE-mediatedmembrane fusion. The HOPS complex is proposed to be recruited toRab7 on the late endosomal membrane and to regulate lateendocytic, phagocytic and autophagic traffic towards lysosomes(PubMed:23351085). Involved in homotypic vesicle fusions betweenlate endosomes and in heterotypic fusions between late endosomesand lysosomes (PubMed:11448994, PubMed:23351085, PubMed:23167963).Required for fusion of endosomes and autophagosomes with lysosomes(PubMed:25783203). {ECO:0000269|PubMed:11448994,ECO:0000269|PubMed:23167963, ECO:0000269|PubMed:25783203,ECO:0000305|PubMed:23351085}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for MAPKBP1_VPS39 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for MAPKBP1_VPS39 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
MAPKBP1 | APTX, KRTAP5-9, KRT31, MDFI, MEOX2, TRIM27, SIAH1, TCF4, TCF12, TRIP6, RGS20, KEAP1, SPRY2, GLRX3, ADAMTSL4, TEX11, ALG13, KRTAP4-12, KRTAP3-2, KRTAP9-2, KRTAP9-4, KRT40, KRTAP10-7, KRTAP10-9, KRTAP10-1, KRTAP10-8, KRTAP10-3, NOTCH2NL, WDR62 | VPS39 | VPS39, CDK2, HOOK1, UVRAG, VPS11, VIPAS39, UBXN6, XPO6, UAP1, NOTCH1, EPN3, RILP, RAB7A, NTRK1, STAT3, AP3D1, STX17, PTAR1, RPS6KC1, ZNF263, SPATA1, USP54, NPAT |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for MAPKBP1_VPS39 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for MAPKBP1_VPS39 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | VPS39 | C0036341 | Schizophrenia | 1 | CTD_human |
Tgene | VPS39 | C1458155 | Mammary Neoplasms | 1 | CTD_human |