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Fusion gene ID: 21021 |
FusionGeneSummary for MAPK9_S100A6 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: MAPK9_S100A6 | Fusion gene ID: 21021 | Hgene | Tgene | Gene symbol | MAPK9 | S100A6 | Gene ID | 5601 | 6277 |
| Gene name | mitogen-activated protein kinase 9 | S100 calcium binding protein A6 | |
| Synonyms | JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK | 2A9|5B10|CABP|CACY|PRA|S10A6 | |
| Cytomap | 5q35.3 | 1q21.3 | |
| Type of gene | protein-coding | protein-coding | |
| Description | mitogen-activated protein kinase 9Jun kinaseMAP kinase 9MAPK 9c-Jun N-terminal kinase 2c-Jun kinase 2stress-activated protein kinase 1astress-activated protein kinase JNK2 | protein S100-A6MLN 4calcyclingrowth factor-inducible protein 2A9prolactin receptor-associated protein | |
| Modification date | 20180523 | 20180522 | |
| UniProtAcc | P45984 | P06703 | |
| Ensembl transtripts involved in fusion gene | ENST00000452135, ENST00000393360, ENST00000455781, ENST00000343111, ENST00000347470, ENST00000397072, ENST00000425491, ENST00000539014, ENST00000524170, | ENST00000496817, ENST00000368719, ENST00000368720, | |
| Fusion gene scores | * DoF score | 5 X 6 X 3=90 | 4 X 4 X 1=16 |
| # samples | 9 | 5 | |
| ** MAII score | log2(9/90*10)=0 | log2(5/16*10)=1.64385618977472 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
| Context | PubMed: MAPK9 [Title/Abstract] AND S100A6 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | MAPK9 | GO:0007254 | JNK cascade | 8654373 |
| Hgene | MAPK9 | GO:0018105 | peptidyl-serine phosphorylation | 21856198 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChiTaRS3.1 | BI963166 | MAPK9 | chr5 | 179660683 | + | S100A6 | chr1 | 153507760 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| intron-3CDS | ENST00000452135 | ENST00000496817 | MAPK9 | chr5 | 179660683 | + | S100A6 | chr1 | 153507760 | + |
| intron-3CDS | ENST00000452135 | ENST00000368719 | MAPK9 | chr5 | 179660683 | + | S100A6 | chr1 | 153507760 | + |
| intron-3CDS | ENST00000452135 | ENST00000368720 | MAPK9 | chr5 | 179660683 | + | S100A6 | chr1 | 153507760 | + |
| intron-3CDS | ENST00000393360 | ENST00000496817 | MAPK9 | chr5 | 179660683 | + | S100A6 | chr1 | 153507760 | + |
| intron-3CDS | ENST00000393360 | ENST00000368719 | MAPK9 | chr5 | 179660683 | + | S100A6 | chr1 | 153507760 | + |
| intron-3CDS | ENST00000393360 | ENST00000368720 | MAPK9 | chr5 | 179660683 | + | S100A6 | chr1 | 153507760 | + |
| intron-3CDS | ENST00000455781 | ENST00000496817 | MAPK9 | chr5 | 179660683 | + | S100A6 | chr1 | 153507760 | + |
| intron-3CDS | ENST00000455781 | ENST00000368719 | MAPK9 | chr5 | 179660683 | + | S100A6 | chr1 | 153507760 | + |
| intron-3CDS | ENST00000455781 | ENST00000368720 | MAPK9 | chr5 | 179660683 | + | S100A6 | chr1 | 153507760 | + |
| intron-3CDS | ENST00000343111 | ENST00000496817 | MAPK9 | chr5 | 179660683 | + | S100A6 | chr1 | 153507760 | + |
| intron-3CDS | ENST00000343111 | ENST00000368719 | MAPK9 | chr5 | 179660683 | + | S100A6 | chr1 | 153507760 | + |
| intron-3CDS | ENST00000343111 | ENST00000368720 | MAPK9 | chr5 | 179660683 | + | S100A6 | chr1 | 153507760 | + |
| intron-3CDS | ENST00000347470 | ENST00000496817 | MAPK9 | chr5 | 179660683 | + | S100A6 | chr1 | 153507760 | + |
| intron-3CDS | ENST00000347470 | ENST00000368719 | MAPK9 | chr5 | 179660683 | + | S100A6 | chr1 | 153507760 | + |
| intron-3CDS | ENST00000347470 | ENST00000368720 | MAPK9 | chr5 | 179660683 | + | S100A6 | chr1 | 153507760 | + |
| intron-3CDS | ENST00000397072 | ENST00000496817 | MAPK9 | chr5 | 179660683 | + | S100A6 | chr1 | 153507760 | + |
| intron-3CDS | ENST00000397072 | ENST00000368719 | MAPK9 | chr5 | 179660683 | + | S100A6 | chr1 | 153507760 | + |
| intron-3CDS | ENST00000397072 | ENST00000368720 | MAPK9 | chr5 | 179660683 | + | S100A6 | chr1 | 153507760 | + |
| intron-3CDS | ENST00000425491 | ENST00000496817 | MAPK9 | chr5 | 179660683 | + | S100A6 | chr1 | 153507760 | + |
| intron-3CDS | ENST00000425491 | ENST00000368719 | MAPK9 | chr5 | 179660683 | + | S100A6 | chr1 | 153507760 | + |
| intron-3CDS | ENST00000425491 | ENST00000368720 | MAPK9 | chr5 | 179660683 | + | S100A6 | chr1 | 153507760 | + |
| intron-3CDS | ENST00000539014 | ENST00000496817 | MAPK9 | chr5 | 179660683 | + | S100A6 | chr1 | 153507760 | + |
| intron-3CDS | ENST00000539014 | ENST00000368719 | MAPK9 | chr5 | 179660683 | + | S100A6 | chr1 | 153507760 | + |
| intron-3CDS | ENST00000539014 | ENST00000368720 | MAPK9 | chr5 | 179660683 | + | S100A6 | chr1 | 153507760 | + |
| intron-3CDS | ENST00000524170 | ENST00000496817 | MAPK9 | chr5 | 179660683 | + | S100A6 | chr1 | 153507760 | + |
| intron-3CDS | ENST00000524170 | ENST00000368719 | MAPK9 | chr5 | 179660683 | + | S100A6 | chr1 | 153507760 | + |
| intron-3CDS | ENST00000524170 | ENST00000368720 | MAPK9 | chr5 | 179660683 | + | S100A6 | chr1 | 153507760 | + |
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FusionProtFeatures for MAPK9_S100A6 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| MAPK9 | S100A6 |
| May function as calcium sensor and modulator,contributing to cellular calcium signaling. May function byinteracting with other proteins, such as TPR-containing proteins,and indirectly play a role in many physiological processes such asthe reorganization of the actin cytoskeleton and in cell motility.Binds 2 calcium ions. Calcium binding is cooperative.{ECO:0000269|PubMed:22399290}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for MAPK9_S100A6 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for MAPK9_S100A6 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for MAPK9_S100A6 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
| Tgene | S100A6 | P06703 | DB11093 | Calcium Citrate | Protein S100-A6 | small molecule | approved |
| Tgene | S100A6 | P06703 | DB11348 | Calcium Phosphate | Protein S100-A6 | small molecule | approved |
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RelatedDiseases for MAPK9_S100A6 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | MAPK9 | C0035126 | Reperfusion Injury | 2 | CTD_human |
| Hgene | MAPK9 | C0020429 | Hyperalgesia | 1 | CTD_human |
| Hgene | MAPK9 | C0022116 | Ischemia | 1 | CTD_human |
| Hgene | MAPK9 | C0027055 | Myocardial Reperfusion Injury | 1 | CTD_human |
| Hgene | MAPK9 | C0027627 | Neoplasm Metastasis | 1 | CTD_human |
| Hgene | MAPK9 | C0032927 | Precancerous Conditions | 1 | CTD_human |
| Hgene | MAPK9 | C0040997 | Trigeminal Neuralgia | 1 | CTD_human |
| Tgene | S100A6 | C0011853 | Diabetes Mellitus, Experimental | 1 | CTD_human |
| Tgene | S100A6 | C0011860 | Diabetes Mellitus, Non-Insulin-Dependent | 1 | CTD_human |
| Tgene | S100A6 | C0023893 | Liver Cirrhosis, Experimental | 1 | CTD_human |
| Tgene | S100A6 | C0024667 | Animal Mammary Neoplasms | 1 | CTD_human |
| Tgene | S100A6 | C0024668 | Mammary Neoplasms, Experimental | 1 | CTD_human |
| Tgene | S100A6 | C0025149 | Medulloblastoma | 1 | CTD_human |
| Tgene | S100A6 | C0751895 | Vasospasm, Intracranial | 1 | CTD_human |
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