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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 20856

FusionGeneSummary for MAP3K2_IWS1

check button Fusion gene summary
Fusion gene informationFusion gene name: MAP3K2_IWS1
Fusion gene ID: 20856
HgeneTgene
Gene symbol

MAP3K2

IWS1

Gene ID

10746

55677

Gene namemitogen-activated protein kinase kinase kinase 2IWS1, SUPT6H interacting protein
SynonymsMEKK2|MEKK2B-
Cytomap

2q14.3

2q14.3

Type of geneprotein-codingprotein-coding
Descriptionmitogen-activated protein kinase kinase kinase 2MAP/ERK kinase kinase 2MAPK/ERK kinase kinase 2MEK kinase 2MEKK 2protein IWS1 homologIWS1 homologIWS1-like proteininteracts with Spt6
Modification date2018052320180523
UniProtAcc

Q9Y2U5

Q96ST2

Ensembl transtripts involved in fusion geneENST00000409947, ENST00000344908, 
ENST00000295321, ENST00000455721, 
ENST00000486662, 
Fusion gene scores* DoF score5 X 5 X 2=503 X 4 X 2=24
# samples 54
** MAII scorelog2(5/50*10)=0log2(4/24*10)=0.736965594166206
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
Context

PubMed: MAP3K2 [Title/Abstract] AND IWS1 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneMAP3K2

GO:0045893

positive regulation of transcription, DNA-templated

14515274


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGARVBRCATCGA-AC-A2BM-01AMAP3K2chr2

128093446

-IWS1chr2

128238751

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000409947ENST00000295321MAP3K2chr2

128093446

-IWS1chr2

128238751

-
5CDS-intronENST00000409947ENST00000455721MAP3K2chr2

128093446

-IWS1chr2

128238751

-
5CDS-intronENST00000409947ENST00000486662MAP3K2chr2

128093446

-IWS1chr2

128238751

-
Frame-shiftENST00000344908ENST00000295321MAP3K2chr2

128093446

-IWS1chr2

128238751

-
5CDS-intronENST00000344908ENST00000455721MAP3K2chr2

128093446

-IWS1chr2

128238751

-
5CDS-intronENST00000344908ENST00000486662MAP3K2chr2

128093446

-IWS1chr2

128238751

-

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FusionProtFeatures for MAP3K2_IWS1


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
MAP3K2

Q9Y2U5

IWS1

Q96ST2

Component of a protein kinase signal transductioncascade. Regulates the JNK and ERK5 pathways by phosphorylatingand activating MAP2K5 and MAP2K7 (By similarity). Plays a role incaveolae kiss-and-run dynamics. {ECO:0000250,ECO:0000269|PubMed:10713157, ECO:0000269|PubMed:16001074}. Transcription factor which plays a key role in definingthe composition of the RNA polymerase II (RNAPII) elongationcomplex and in modulating the production of mature mRNAtranscripts. Acts as an assembly factor to recruit various factorsto the RNAPII elongation complex and is recruited to the complexvia binding to the transcription elongation factor SUPT6H bound tothe C-terminal domain (CTD) of the RNAPII subunit RPB1 (POLR2A).The SUPT6H:IWS1:CTD complex recruits mRNA export factors(ALYREF/THOC4, EXOSC10) as well as histone modifying enzymes (suchas SETD2) to ensure proper mRNA splicing, efficient mRNA exportand elongation-coupled H3K36 methylation, a signature chromatinmark of active transcription. {ECO:0000269|PubMed:17184735,ECO:0000269|PubMed:17234882, ECO:0000269|PubMed:19141475}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
>>>>>>
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneMAP3K2chr2:128093446chr2:128238751ENST00000344908-416357_61788620DomainProtein kinase
HgeneMAP3K2chr2:128093446chr2:128238751ENST00000344908-41643_12288620DomainPB1
HgeneMAP3K2chr2:128093446chr2:128238751ENST00000409947-517357_61788620DomainProtein kinase
HgeneMAP3K2chr2:128093446chr2:128238751ENST00000409947-51743_12288620DomainPB1
HgeneMAP3K2chr2:128093446chr2:128238751ENST00000344908-416362_37188620Nucleotide bindingATP
HgeneMAP3K2chr2:128093446chr2:128238751ENST00000409947-517362_37188620Nucleotide bindingATP
TgeneIWS1chr2:128093446chr2:128238751ENST00000295321-121483_509776820Compositional biasNote=Glu-rich
TgeneIWS1chr2:128093446chr2:128238751ENST00000295321-1214614_692776820DomainTFIIS N-terminal
TgeneIWS1chr2:128093446chr2:128238751ENST00000295321-1214235_296776820RegionNote=3 X approximate tandem repeats
TgeneIWS1chr2:128093446chr2:128238751ENST00000295321-1214235_260776820RepeatNote=1
TgeneIWS1chr2:128093446chr2:128238751ENST00000295321-1214261_286776820RepeatNote=2
TgeneIWS1chr2:128093446chr2:128238751ENST00000295321-1214287_296776820RepeatNote=3%3B half-length


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FusionGeneSequence for MAP3K2_IWS1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.
>In-frame_MAP3K2_ENST00000409947_chr2_128093446_-_IWS1_ENST00000295321_chr2_128238751_-_132aa
MDDQQALNSIMQDLAVLHKASRPALSLQETRKAKSSSPKKQNDVRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFGQSMDLHYTNNEFQ


* Fusion transcript sequences (only coding sequence (CDS) region).
>In-frame_MAP3K2_ENST00000409947_chr2_128093446_-_IWS1_ENST00000295321_chr2_128238751_-_396nt
ATGGATGATCAGCAAGCTTTGAACTCAATCATGCAAGATTTGGCTGTCCTTCATAAGGCCAGTCGACCAGCATTATCCTTGCAGGAAACC
AGAAAAGCAAAATCTTCATCACCAAAAAAACAGAATGATGTCCGAGTCAAATTTGAACATAGAGGAGAAAAAAGAATCCTTCAGTTCCCC
AGACCAGTTAAACTGGAAGATCTGAGATCTAAAGCTAAAATTGCCTTTGGACAGTCTATGGATCTACATTATACCAATAACGAGTTTCAG
GCGACCTCCAAGAAGGGTATCAGTCGACTGGATAAACAGATGAGAAAGTTCACAGATATAAGGAAAAAAAGCAGATCTGCACACGCAGTG


* Fusion transcript sequences (Full-length transcript).
>In-frame_MAP3K2_ENST00000409947_chr2_128093446_-_IWS1_ENST00000295321_chr2_128238751_-_917nt
TTTCTAAAGTCCCTCAGGAAAAAAATTCTGAAACTTGAGCCACAAATTAAGAGGCAGACGGCTTTTCTCCTTGCAAATGACCTGCCACAC
AGTCCGTCACTGCCTCTGCTAGCTCTGCTACCCTTGGGCCCTGTCCACAGCCCACGTGGGAGACCTTTTCACGGGATCTACTCGGATGTC
TGGGATCTGGCCACTACCGCAGGCTCGAGACAACCCAGGCCATAAAGAATGCTGATGGGAGAACCATTTTCCTAATTTTCAAATTGTTGA
GCTGTTTGCCATAATGGATGATCAGCAAGCTTTGAACTCAATCATGCAAGATTTGGCTGTCCTTCATAAGGCCAGTCGACCAGCATTATC
CTTGCAGGAAACCAGAAAAGCAAAATCTTCATCACCAAAAAAACAGAATGATGTCCGAGTCAAATTTGAACATAGAGGAGAAAAAAGAAT
CCTTCAGTTCCCCAGACCAGTTAAACTGGAAGATCTGAGATCTAAAGCTAAAATTGCCTTTGGACAGTCTATGGATCTACATTATACCAA
TAACGAGTTTCAGGCGACCTCCAAGAAGGGTATCAGTCGACTGGATAAACAGATGAGAAAGTTCACAGATATAAGGAAAAAAAGCAGATC
TGCACACGCAGTGAAAATCAGCATTGAGGGCAACAAAATGCCATTGTGACCTTGCCTGGAATGTGTCCCCATCTCTACTCTAAGAAATGC
GCAATGGACTCTTTGGAGAAAGAAGATATTTTAAAACATTTTTAGTGTGTCTGTAAATGGTTCAGCGTGTATCAGATGTTGTCATAGGAC
TCACATTTCTCTCAGTTATATTTAAAACCGTTGTGTACTTTGTACAAAGGAATACTAGTCATACTTCTATAAACTTTACACAATAAAATT


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FusionGenePPI for MAP3K2_IWS1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
MAP3K2SFN, MAP2K5, SH2D2A, YWHAE, MAP2K7, MAP2K4, MAPK8, XIAP, IKBKG, PIBF1, NEDD4, YWHAB, YWHAG, NEDD4L, STUB1, SMURF1, MAP3K2, MAP2K3, STK38, HSP90AA1, BIRC2, STAMBP, USP2, MAP3K3, MAPK7, STX3, YWHAZ, YWHAQ, TRAF7, CTNNB1, GSK3B, BTRC, AXIN1, AXIN2, RAB3IP, CBY1, TRIM25IWS1WDR48, SUPT6H, SETD2, POLR2A, SDHB, DHX15, FAM162A, CSNK2A1, STAT2, ELP6, ERICH2, KRTAP10-3, ENO1, SHMT2, MOV10, NXF1, CTR9, SUPT16H, HIST1H2BG, XPO1, PRCC, SUPT5H, CTDP1, RNF40, ACTR1A, LLGL2, CCDC88A, SAMD1, SF3B5, DAB2IP, PPM1A, PIP4K2A, RUVBL2, TRIM25


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with
TgeneIWS1chr2:128093446chr2:128238751ENST00000295321-1214523_819776820SUPT6H and ALYREF


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for MAP3K2_IWS1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status
HgeneMAP3K2Q9Y2U5DB06616BosutinibMitogen-activated protein kinase kinase kinase 2small moleculeapproved

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RelatedDiseases for MAP3K2_IWS1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource