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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 20790

FusionGeneSummary for MAP1LC3B_MAP1LC3B

check button Fusion gene summary
Fusion gene informationFusion gene name: MAP1LC3B_MAP1LC3B
Fusion gene ID: 20790
HgeneTgene
Gene symbol

MAP1LC3B

MAP1LC3B

Gene ID

81631

81631

Gene namemicrotubule associated protein 1 light chain 3 betamicrotubule associated protein 1 light chain 3 beta
SynonymsATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-aATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-a
Cytomap

16q24.2

16q24.2

Type of geneprotein-codingprotein-coding
Descriptionmicrotubule-associated proteins 1A/1B light chain 3BMAP1 light chain 3-like protein 2MAP1A/MAP1B LC3 BMAP1A/MAP1B light chain 3 Bautophagy-related ubiquitin-like modifier LC3 Bmicrotubule-associated proteins 1A/1B light chain 3BMAP1 light chain 3-like protein 2MAP1A/MAP1B LC3 BMAP1A/MAP1B light chain 3 Bautophagy-related ubiquitin-like modifier LC3 B
Modification date2018052320180523
UniProtAcc

Q9GZQ8

Q9GZQ8

Ensembl transtripts involved in fusion geneENST00000562778, ENST00000268607, 
ENST00000565788, ENST00000534986, 
ENST00000562778, ENST00000268607, 
ENST00000565788, ENST00000534986, 
Fusion gene scores* DoF score2 X 2 X 1=41 X 1 X 1=1
# samples 21
** MAII scorelog2(2/4*10)=2.32192809488736log2(1/1*10)=3.32192809488736
Context

PubMed: MAP1LC3B [Title/Abstract] AND MAP1LC3B [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneMAP1LC3B

GO:0006914

autophagy

23629966

HgeneMAP1LC3B

GO:0009267

cellular response to starvation

28223137

HgeneMAP1LC3B

GO:0016236

macroautophagy

28223137

HgeneMAP1LC3B

GO:0097352

autophagosome maturation

28223137

TgeneMAP1LC3B

GO:0006914

autophagy

23629966

TgeneMAP1LC3B

GO:0009267

cellular response to starvation

28223137

TgeneMAP1LC3B

GO:0016236

macroautophagy

28223137

TgeneMAP1LC3B

GO:0097352

autophagosome maturation

28223137


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS3.1BM720820MAP1LC3Bchr16

87435173

+MAP1LC3Bchr9

111894305

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
intron-intronENST00000562778ENST00000562778MAP1LC3Bchr16

87435173

+MAP1LC3Bchr9

111894305

-
intron-intronENST00000562778ENST00000268607MAP1LC3Bchr16

87435173

+MAP1LC3Bchr9

111894305

-
intron-intronENST00000562778ENST00000565788MAP1LC3Bchr16

87435173

+MAP1LC3Bchr9

111894305

-
intron-intronENST00000562778ENST00000534986MAP1LC3Bchr16

87435173

+MAP1LC3Bchr9

111894305

-
intron-intronENST00000268607ENST00000562778MAP1LC3Bchr16

87435173

+MAP1LC3Bchr9

111894305

-
intron-intronENST00000268607ENST00000268607MAP1LC3Bchr16

87435173

+MAP1LC3Bchr9

111894305

-
intron-intronENST00000268607ENST00000565788MAP1LC3Bchr16

87435173

+MAP1LC3Bchr9

111894305

-
intron-intronENST00000268607ENST00000534986MAP1LC3Bchr16

87435173

+MAP1LC3Bchr9

111894305

-
intron-intronENST00000565788ENST00000562778MAP1LC3Bchr16

87435173

+MAP1LC3Bchr9

111894305

-
intron-intronENST00000565788ENST00000268607MAP1LC3Bchr16

87435173

+MAP1LC3Bchr9

111894305

-
intron-intronENST00000565788ENST00000565788MAP1LC3Bchr16

87435173

+MAP1LC3Bchr9

111894305

-
intron-intronENST00000565788ENST00000534986MAP1LC3Bchr16

87435173

+MAP1LC3Bchr9

111894305

-
intron-intronENST00000534986ENST00000562778MAP1LC3Bchr16

87435173

+MAP1LC3Bchr9

111894305

-
intron-intronENST00000534986ENST00000268607MAP1LC3Bchr16

87435173

+MAP1LC3Bchr9

111894305

-
intron-intronENST00000534986ENST00000565788MAP1LC3Bchr16

87435173

+MAP1LC3Bchr9

111894305

-
intron-intronENST00000534986ENST00000534986MAP1LC3Bchr16

87435173

+MAP1LC3Bchr9

111894305

-

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FusionProtFeatures for MAP1LC3B_MAP1LC3B


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
MAP1LC3B

Q9GZQ8

MAP1LC3B

Q9GZQ8

Ubiquitin-like modifier involved in formation ofautophagosomal vacuoles (autophagosomes). Plays a role inmitophagy which contributes to regulate mitochondrial quantity andquality by eliminating the mitochondria to a basal level tofulfill cellular energy requirements and preventing excess ROSproduction. Whereas LC3s are involved in elongation of thephagophore membrane, the GABARAP/GATE-16 subfamily is essentialfor a later stage in autophagosome maturation. Promotes primaryciliogenesis by removing OFD1 from centriolar satellites via theautophagic pathway. {ECO:0000269|PubMed:20418806,ECO:0000269|PubMed:23209295, ECO:0000269|PubMed:24089205}. Ubiquitin-like modifier involved in formation ofautophagosomal vacuoles (autophagosomes). Plays a role inmitophagy which contributes to regulate mitochondrial quantity andquality by eliminating the mitochondria to a basal level tofulfill cellular energy requirements and preventing excess ROSproduction. Whereas LC3s are involved in elongation of thephagophore membrane, the GABARAP/GATE-16 subfamily is essentialfor a later stage in autophagosome maturation. Promotes primaryciliogenesis by removing OFD1 from centriolar satellites via theautophagic pathway. {ECO:0000269|PubMed:20418806,ECO:0000269|PubMed:23209295, ECO:0000269|PubMed:24089205}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for MAP1LC3B_MAP1LC3B


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for MAP1LC3B_MAP1LC3B


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for MAP1LC3B_MAP1LC3B


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for MAP1LC3B_MAP1LC3B


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneMAP1LC3BC4277682Chemical and Drug Induced Liver Injury1CTD_human
TgeneMAP1LC3BC4277682Chemical and Drug Induced Liver Injury1CTD_human