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Fusion gene ID: 20790 |
FusionGeneSummary for MAP1LC3B_MAP1LC3B |
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Fusion gene information | Fusion gene name: MAP1LC3B_MAP1LC3B | Fusion gene ID: 20790 | Hgene | Tgene | Gene symbol | MAP1LC3B | MAP1LC3B | Gene ID | 81631 | 81631 |
Gene name | microtubule associated protein 1 light chain 3 beta | microtubule associated protein 1 light chain 3 beta | |
Synonyms | ATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-a | ATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-a | |
Cytomap | 16q24.2 | 16q24.2 | |
Type of gene | protein-coding | protein-coding | |
Description | microtubule-associated proteins 1A/1B light chain 3BMAP1 light chain 3-like protein 2MAP1A/MAP1B LC3 BMAP1A/MAP1B light chain 3 Bautophagy-related ubiquitin-like modifier LC3 B | microtubule-associated proteins 1A/1B light chain 3BMAP1 light chain 3-like protein 2MAP1A/MAP1B LC3 BMAP1A/MAP1B light chain 3 Bautophagy-related ubiquitin-like modifier LC3 B | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | Q9GZQ8 | Q9GZQ8 | |
Ensembl transtripts involved in fusion gene | ENST00000562778, ENST00000268607, ENST00000565788, ENST00000534986, | ENST00000562778, ENST00000268607, ENST00000565788, ENST00000534986, | |
Fusion gene scores | * DoF score | 2 X 2 X 1=4 | 1 X 1 X 1=1 |
# samples | 2 | 1 | |
** MAII score | log2(2/4*10)=2.32192809488736 | log2(1/1*10)=3.32192809488736 | |
Context | PubMed: MAP1LC3B [Title/Abstract] AND MAP1LC3B [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | MAP1LC3B | GO:0006914 | autophagy | 23629966 |
Hgene | MAP1LC3B | GO:0009267 | cellular response to starvation | 28223137 |
Hgene | MAP1LC3B | GO:0016236 | macroautophagy | 28223137 |
Hgene | MAP1LC3B | GO:0097352 | autophagosome maturation | 28223137 |
Tgene | MAP1LC3B | GO:0006914 | autophagy | 23629966 |
Tgene | MAP1LC3B | GO:0009267 | cellular response to starvation | 28223137 |
Tgene | MAP1LC3B | GO:0016236 | macroautophagy | 28223137 |
Tgene | MAP1LC3B | GO:0097352 | autophagosome maturation | 28223137 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | BM720820 | MAP1LC3B | chr16 | 87435173 | + | MAP1LC3B | chr9 | 111894305 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-intron | ENST00000562778 | ENST00000562778 | MAP1LC3B | chr16 | 87435173 | + | MAP1LC3B | chr9 | 111894305 | - |
intron-intron | ENST00000562778 | ENST00000268607 | MAP1LC3B | chr16 | 87435173 | + | MAP1LC3B | chr9 | 111894305 | - |
intron-intron | ENST00000562778 | ENST00000565788 | MAP1LC3B | chr16 | 87435173 | + | MAP1LC3B | chr9 | 111894305 | - |
intron-intron | ENST00000562778 | ENST00000534986 | MAP1LC3B | chr16 | 87435173 | + | MAP1LC3B | chr9 | 111894305 | - |
intron-intron | ENST00000268607 | ENST00000562778 | MAP1LC3B | chr16 | 87435173 | + | MAP1LC3B | chr9 | 111894305 | - |
intron-intron | ENST00000268607 | ENST00000268607 | MAP1LC3B | chr16 | 87435173 | + | MAP1LC3B | chr9 | 111894305 | - |
intron-intron | ENST00000268607 | ENST00000565788 | MAP1LC3B | chr16 | 87435173 | + | MAP1LC3B | chr9 | 111894305 | - |
intron-intron | ENST00000268607 | ENST00000534986 | MAP1LC3B | chr16 | 87435173 | + | MAP1LC3B | chr9 | 111894305 | - |
intron-intron | ENST00000565788 | ENST00000562778 | MAP1LC3B | chr16 | 87435173 | + | MAP1LC3B | chr9 | 111894305 | - |
intron-intron | ENST00000565788 | ENST00000268607 | MAP1LC3B | chr16 | 87435173 | + | MAP1LC3B | chr9 | 111894305 | - |
intron-intron | ENST00000565788 | ENST00000565788 | MAP1LC3B | chr16 | 87435173 | + | MAP1LC3B | chr9 | 111894305 | - |
intron-intron | ENST00000565788 | ENST00000534986 | MAP1LC3B | chr16 | 87435173 | + | MAP1LC3B | chr9 | 111894305 | - |
intron-intron | ENST00000534986 | ENST00000562778 | MAP1LC3B | chr16 | 87435173 | + | MAP1LC3B | chr9 | 111894305 | - |
intron-intron | ENST00000534986 | ENST00000268607 | MAP1LC3B | chr16 | 87435173 | + | MAP1LC3B | chr9 | 111894305 | - |
intron-intron | ENST00000534986 | ENST00000565788 | MAP1LC3B | chr16 | 87435173 | + | MAP1LC3B | chr9 | 111894305 | - |
intron-intron | ENST00000534986 | ENST00000534986 | MAP1LC3B | chr16 | 87435173 | + | MAP1LC3B | chr9 | 111894305 | - |
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FusionProtFeatures for MAP1LC3B_MAP1LC3B |
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Hgene | Tgene |
MAP1LC3B | MAP1LC3B |
Ubiquitin-like modifier involved in formation ofautophagosomal vacuoles (autophagosomes). Plays a role inmitophagy which contributes to regulate mitochondrial quantity andquality by eliminating the mitochondria to a basal level tofulfill cellular energy requirements and preventing excess ROSproduction. Whereas LC3s are involved in elongation of thephagophore membrane, the GABARAP/GATE-16 subfamily is essentialfor a later stage in autophagosome maturation. Promotes primaryciliogenesis by removing OFD1 from centriolar satellites via theautophagic pathway. {ECO:0000269|PubMed:20418806,ECO:0000269|PubMed:23209295, ECO:0000269|PubMed:24089205}. | Ubiquitin-like modifier involved in formation ofautophagosomal vacuoles (autophagosomes). Plays a role inmitophagy which contributes to regulate mitochondrial quantity andquality by eliminating the mitochondria to a basal level tofulfill cellular energy requirements and preventing excess ROSproduction. Whereas LC3s are involved in elongation of thephagophore membrane, the GABARAP/GATE-16 subfamily is essentialfor a later stage in autophagosome maturation. Promotes primaryciliogenesis by removing OFD1 from centriolar satellites via theautophagic pathway. {ECO:0000269|PubMed:20418806,ECO:0000269|PubMed:23209295, ECO:0000269|PubMed:24089205}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for MAP1LC3B_MAP1LC3B |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for MAP1LC3B_MAP1LC3B |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for MAP1LC3B_MAP1LC3B |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for MAP1LC3B_MAP1LC3B |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | MAP1LC3B | C4277682 | Chemical and Drug Induced Liver Injury | 1 | CTD_human |
Tgene | MAP1LC3B | C4277682 | Chemical and Drug Induced Liver Injury | 1 | CTD_human |