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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 20716

FusionGeneSummary for MAML3_LSG1

check button Fusion gene summary
Fusion gene informationFusion gene name: MAML3_LSG1
Fusion gene ID: 20716
HgeneTgene
Gene symbol

MAML3

LSG1

Gene ID

55534

55341

Gene namemastermind like transcriptional coactivator 3large 60S subunit nuclear export GTPase 1
SynonymsCAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3|mam-3-
Cytomap

4q31.1

3q29

Type of geneprotein-codingprotein-coding
Descriptionmastermind-like protein 3CAG repeat containing (glia-derived nexin I alpha)expanded repeat domain, CAG/CTG 3polyglutamine richtrinucleotide repeat containing 3large subunit GTPase 1 homologhLsg1
Modification date2018052420180526
UniProtAcc

Q96JK9

Q9H089

Ensembl transtripts involved in fusion geneENST00000509479, ENST00000327122, 
ENST00000398940, 
ENST00000265245, 
ENST00000480853, 
Fusion gene scores* DoF score14 X 7 X 6=5882 X 2 X 2=8
# samples 142
** MAII scorelog2(14/588*10)=-2.0703893278914
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(2/8*10)=1.32192809488736
Context

PubMed: MAML3 [Title/Abstract] AND LSG1 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneMAML3

GO:0007219

Notch signaling pathway

12370315

HgeneMAML3

GO:0045944

positive regulation of transcription by RNA polymerase II

12370315

TgeneLSG1

GO:0051168

nuclear export

16209721


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGALDPRADTCGA-G9-6361-01AMAML3chr4

141074014

-LSG1chr3

194387301

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
Frame-shitENST00000509479ENST00000265245MAML3chr4

141074014

-LSG1chr3

194387301

-
5CDS-intronENST00000509479ENST00000480853MAML3chr4

141074014

-LSG1chr3

194387301

-
intron-3CDSENST00000327122ENST00000265245MAML3chr4

141074014

-LSG1chr3

194387301

-
intron-intronENST00000327122ENST00000480853MAML3chr4

141074014

-LSG1chr3

194387301

-
intron-3CDSENST00000398940ENST00000265245MAML3chr4

141074014

-LSG1chr3

194387301

-
intron-intronENST00000398940ENST00000480853MAML3chr4

141074014

-LSG1chr3

194387301

-

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FusionProtFeatures for MAML3_LSG1


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
MAML3

Q96JK9

LSG1

Q9H089

Acts as a transcriptional coactivator for NOTCHproteins. Has been shown to amplify NOTCH-induced transcription ofHES1. {ECO:0000269|PubMed:12370315, ECO:0000269|PubMed:12386158}. GTPase required for the XPO1/CRM1-mediated nuclearexport of the 60S ribosomal subunit. Probably acts by mediatingthe release of NMD3 from the 60S ribosomal subunit after exportinto the cytoplasm (Probable). {ECO:0000305|PubMed:16209721}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for MAML3_LSG1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for MAML3_LSG1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
MAML3MAML1, NOTCH1, NFX1, SUPT5H, RAI1, ZBTB1, SCMH1, ZZZ3, RBPJLSG1ZNF622, MOV10, NXF1, FGL1, DEGS1, LPPR1, SLC39A1, TTC29, VAPB, NTRK1, TMEM216, RPL10, VAPA, NOP56


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for MAML3_LSG1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for MAML3_LSG1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneMAML3C0010606Adenoid Cystic Carcinoma1CTD_human
HgeneMAML3C0018798Congenital Heart Defects1CTD_human
HgeneMAML3C1261473Sarcoma1CTD_human
HgeneMAML3C1710096Sinonasal undifferentiated carcinoma1CTD_human