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Fusion gene ID: 20715 |
FusionGeneSummary for MAML3_GTSF1 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: MAML3_GTSF1 | Fusion gene ID: 20715 | Hgene | Tgene | Gene symbol | MAML3 | GTSF1 | Gene ID | 55534 | 121355 |
| Gene name | mastermind like transcriptional coactivator 3 | gametocyte specific factor 1 | |
| Synonyms | CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3|mam-3 | FAM112B | |
| Cytomap | 4q31.1 | 12q13.13 | |
| Type of gene | protein-coding | protein-coding | |
| Description | mastermind-like protein 3CAG repeat containing (glia-derived nexin I alpha)expanded repeat domain, CAG/CTG 3polyglutamine richtrinucleotide repeat containing 3 | gametocyte-specific factor 1family with sequence similarity 112, member B | |
| Modification date | 20180524 | 20180519 | |
| UniProtAcc | Q96JK9 | Q8WW33 | |
| Ensembl transtripts involved in fusion gene | ENST00000509479, ENST00000327122, ENST00000398940, | ENST00000552397, ENST00000305879, ENST00000552395, | |
| Fusion gene scores | * DoF score | 14 X 7 X 6=588 | 3 X 3 X 4=36 |
| # samples | 14 | 4 | |
| ** MAII score | log2(14/588*10)=-2.0703893278914 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(4/36*10)=0.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
| Context | PubMed: MAML3 [Title/Abstract] AND GTSF1 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | MAML3 | GO:0007219 | Notch signaling pathway | 12370315 |
| Hgene | MAML3 | GO:0045944 | positive regulation of transcription by RNA polymerase II | 12370315 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | UCEC | TCGA-AX-A3FW-01A | MAML3 | chr4 | 141074014 | - | GTSF1 | chr12 | 54857081 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| In-frame | ENST00000509479 | ENST00000552397 | MAML3 | chr4 | 141074014 | - | GTSF1 | chr12 | 54857081 | - |
| In-frame | ENST00000509479 | ENST00000305879 | MAML3 | chr4 | 141074014 | - | GTSF1 | chr12 | 54857081 | - |
| 5CDS-5UTR | ENST00000509479 | ENST00000552395 | MAML3 | chr4 | 141074014 | - | GTSF1 | chr12 | 54857081 | - |
| intron-3CDS | ENST00000327122 | ENST00000552397 | MAML3 | chr4 | 141074014 | - | GTSF1 | chr12 | 54857081 | - |
| intron-3CDS | ENST00000327122 | ENST00000305879 | MAML3 | chr4 | 141074014 | - | GTSF1 | chr12 | 54857081 | - |
| intron-5UTR | ENST00000327122 | ENST00000552395 | MAML3 | chr4 | 141074014 | - | GTSF1 | chr12 | 54857081 | - |
| intron-3CDS | ENST00000398940 | ENST00000552397 | MAML3 | chr4 | 141074014 | - | GTSF1 | chr12 | 54857081 | - |
| intron-3CDS | ENST00000398940 | ENST00000305879 | MAML3 | chr4 | 141074014 | - | GTSF1 | chr12 | 54857081 | - |
| intron-5UTR | ENST00000398940 | ENST00000552395 | MAML3 | chr4 | 141074014 | - | GTSF1 | chr12 | 54857081 | - |
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FusionProtFeatures for MAML3_GTSF1 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| MAML3 | GTSF1 |
| Acts as a transcriptional coactivator for NOTCHproteins. Has been shown to amplify NOTCH-induced transcription ofHES1. {ECO:0000269|PubMed:12370315, ECO:0000269|PubMed:12386158}. | Required for spermatogenesis and is involved in thesuppression of retrotransposon transcription in male germ cells.{ECO:0000250|UniProtKB:Q9DAN6}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Tgene | >GTSF1 | chr4:141074014 | chr12:54857081 | ENST00000305879 | - | 2 | 9 | 48_75 | 39 | 213 | Zinc finger | CHHC U11-48K-type 2 |
| Tgene | >GTSF1 | chr4:141074014 | chr12:54857081 | ENST00000552397 | - | 2 | 9 | 48_75 | 39 | -58 | Zinc finger | CHHC U11-48K-type 2 |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | >MAML3 | chr4:141074014 | chr12:54857081 | ENST00000509479 | - | 1 | 5 | 467_968 | 156 | 1139 | Compositional bias | Note=Gln-rich |
| Hgene | >MAML3 | chr4:141074014 | chr12:54857081 | ENST00000509479 | - | 1 | 5 | 548_595 | 156 | 1139 | Compositional bias | Note=Asn-rich |
| Tgene | GTSF1 | chr4:141074014 | chr12:54857081 | ENST00000305879 | - | 2 | 9 | 14_41 | 39 | 213 | Zinc finger | CHHC U11-48K-type 1 |
| Tgene | GTSF1 | chr4:141074014 | chr12:54857081 | ENST00000552397 | - | 2 | 9 | 14_41 | 39 | -58 | Zinc finger | CHHC U11-48K-type 1 |
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FusionGeneSequence for MAML3_GTSF1 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| >In-frame_MAML3_ENST00000509479_chr4_141074014_-_GTSF1_ENST00000552397_chr12_54857081_-_285aa MGDFAAPAAAANGSSICINSSLNSSLGGAGIGVNNTPNSTPAAPSSNHPAAGGCGGSGGPGGGSAAVPKHSTVVERLRQRIEGCRRHHVN CENRYQQAQVEQLELERRDTVSLYQRTLEQRAKKSGAGTGKQQHPSKPQQDAEAASAEQRNHTLIMNHPDVASKLATCPFNARHQVPRAE ISHHISSCDDRSCIEQDVVNQTRSLRQETLAESTWQCPPCDEDWDKDLWEQTSTPFVWGTTHYSDNNSPASNIVTEHKNNLASGMRVPKS >In-frame_MAML3_ENST00000509479_chr4_141074014_-_GTSF1_ENST00000305879_chr12_54857081_-_285aa MGDFAAPAAAANGSSICINSSLNSSLGGAGIGVNNTPNSTPAAPSSNHPAAGGCGGSGGPGGGSAAVPKHSTVVERLRQRIEGCRRHHVN CENRYQQAQVEQLELERRDTVSLYQRTLEQRAKKSGAGTGKQQHPSKPQQDAEAASAEQRNHTLIMNHPDVASKLATCPFNARHQVPRAE ISHHISSCDDRSCIEQDVVNQTRSLRQETLAESTWQCPPCDEDWDKDLWEQTSTPFVWGTTHYSDNNSPASNIVTEHKNNLASGMRVPKS |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| >In-frame_MAML3_ENST00000509479_chr4_141074014_-_GTSF1_ENST00000552397_chr12_54857081_-_855nt ATGGGGGATTTCGCAGCCCCCGCTGCTGCCGCGAATGGCAGTAGTATTTGCATCAACAGTAGCCTGAACAGCAGCCTCGGCGGGGCCGGG ATCGGTGTGAATAATACTCCCAATAGTACTCCCGCTGCTCCGAGTAGCAATCACCCGGCAGCCGGTGGATGCGGCGGCTCCGGGGGCCCC GGCGGCGGTTCGGCGGCCGTTCCCAAGCACAGCACCGTGGTGGAGCGGCTCCGCCAGCGCATCGAGGGCTGCCGTCGGCACCACGTCAAC TGCGAGAACAGGTACCAGCAGGCTCAGGTGGAGCAGCTGGAGCTGGAGCGCCGGGACACCGTGAGCCTCTACCAGCGGACCCTGGAGCAG AGGGCCAAGAAATCGGGCGCCGGCACCGGCAAACAGCAGCACCCGAGCAAACCCCAGCAAGATGCGGAGGCTGCCTCGGCGGAGCAGAGG AACCACACGCTGATCATGAATCATCCTGATGTTGCAAGCAAATTGGCTACTTGTCCCTTCAATGCTCGCCACCAGGTTCCTCGAGCTGAA ATTAGTCATCATATCTCAAGCTGTGATGACAGAAGTTGTATTGAGCAAGATGTTGTCAACCAAACCAGGAGCCTTAGACAAGAGACTCTG GCTGAGAGCACTTGGCAGTGCCCTCCTTGCGATGAAGACTGGGATAAAGATTTGTGGGAGCAGACCAGCACCCCATTTGTCTGGGGCACA ACTCACTACTCTGACAACAACAGCCCTGCGAGCAACATAGTTACAGAACATAAGAATAACCTGGCTTCAGGCATGCGAGTTCCCAAATCT >In-frame_MAML3_ENST00000509479_chr4_141074014_-_GTSF1_ENST00000305879_chr12_54857081_-_855nt ATGGGGGATTTCGCAGCCCCCGCTGCTGCCGCGAATGGCAGTAGTATTTGCATCAACAGTAGCCTGAACAGCAGCCTCGGCGGGGCCGGG ATCGGTGTGAATAATACTCCCAATAGTACTCCCGCTGCTCCGAGTAGCAATCACCCGGCAGCCGGTGGATGCGGCGGCTCCGGGGGCCCC GGCGGCGGTTCGGCGGCCGTTCCCAAGCACAGCACCGTGGTGGAGCGGCTCCGCCAGCGCATCGAGGGCTGCCGTCGGCACCACGTCAAC TGCGAGAACAGGTACCAGCAGGCTCAGGTGGAGCAGCTGGAGCTGGAGCGCCGGGACACCGTGAGCCTCTACCAGCGGACCCTGGAGCAG AGGGCCAAGAAATCGGGCGCCGGCACCGGCAAACAGCAGCACCCGAGCAAACCCCAGCAAGATGCGGAGGCTGCCTCGGCGGAGCAGAGG AACCACACGCTGATCATGAATCATCCTGATGTTGCAAGCAAATTGGCTACTTGTCCCTTCAATGCTCGCCACCAGGTTCCTCGAGCTGAA ATTAGTCATCATATCTCAAGCTGTGATGACAGAAGTTGTATTGAGCAAGATGTTGTCAACCAAACCAGGAGCCTTAGACAAGAGACTCTG GCTGAGAGCACTTGGCAGTGCCCTCCTTGCGATGAAGACTGGGATAAAGATTTGTGGGAGCAGACCAGCACCCCATTTGTCTGGGGCACA ACTCACTACTCTGACAACAACAGCCCTGCGAGCAACATAGTTACAGAACATAAGAATAACCTGGCTTCAGGCATGCGAGTTCCCAAATCT |
| * Fusion transcript sequences (Full-length transcript). |
| >In-frame_MAML3_ENST00000509479_chr4_141074014_-_GTSF1_ENST00000552397_chr12_54857081_-_1932nt ACTCCGCTGGCATGGAGGAGGAGGAGGAGGTGGAGGAGCGAGAGGAGGAGGAGGAGGCGGCGGCGGCGGCGGCGGCGAGCAGTTGATCAT TGTGATGGTGGCAGGAGCAGCGGCGGCAGCGGCAGCCCAGCCGAGCGTTAGGTGCTGCTCTCTGCGCGGCGTTTTGCAAAGGACTTCACC GATCTACTTTTGCAGTCGCCTCGGACTGTCCATGTGTTTACTTCCCCCAGCCCGAGGATTCGATATCTAGGTTCCTGTGAAATGCAACTG AGCAGCCAAAGTACTTTGAGAACACGGGGCGGCATAAACACCAAAACTTTTTTGTGGAAGGAAAATGCAATAAGCAAGCTTGCCGTTTTC CGATGCGGTGTGGAGTGAGTGTGTGTCGCGCGTGTCCGCACTGGAGGCATATGCTTGTGTGTGTACATGGGGTGTGTTTTTCGGTATGTA GGGAGAAAATGCTTGCCAACCACCGGAAATCTCCTGGAATTTATTAGAAAATAATGGATTATAAAAAGAAGGCAAGCAAGGAGCGGATCT CCCCTTGAGTTGCAACCCGATTTGCTGCTGGCTCAGTTTGTTGTGATTCTTTTTGTTGATAGGTGTCTGATGGTATTCCGATAACGTTCC CCCCTTTTCTTCCCCTTGAGCTTTTACAGTTTAAAAAAAGGAAACAAAAACCACCCCAAAATCTCCCCCCCCGTTTTTTTCGCCCCGTCG GGATCGCCGTTTCCATCCATGTGCTTGCGTCTCCCCCGCGTTCCACTTAAACTATTTTAATCCTTGGACCCAAGGAGGAGGCTGATAGGG GGGTGGATAAAAAAAGTTCTTCCAAAATAGTGTGCCCGGGGAGCAGGATGGGGGATTTCGCAGCCCCCGCTGCTGCCGCGAATGGCAGTA GTATTTGCATCAACAGTAGCCTGAACAGCAGCCTCGGCGGGGCCGGGATCGGTGTGAATAATACTCCCAATAGTACTCCCGCTGCTCCGA GTAGCAATCACCCGGCAGCCGGTGGATGCGGCGGCTCCGGGGGCCCCGGCGGCGGTTCGGCGGCCGTTCCCAAGCACAGCACCGTGGTGG AGCGGCTCCGCCAGCGCATCGAGGGCTGCCGTCGGCACCACGTCAACTGCGAGAACAGGTACCAGCAGGCTCAGGTGGAGCAGCTGGAGC TGGAGCGCCGGGACACCGTGAGCCTCTACCAGCGGACCCTGGAGCAGAGGGCCAAGAAATCGGGCGCCGGCACCGGCAAACAGCAGCACC CGAGCAAACCCCAGCAAGATGCGGAGGCTGCCTCGGCGGAGCAGAGGAACCACACGCTGATCATGAATCATCCTGATGTTGCAAGCAAAT TGGCTACTTGTCCCTTCAATGCTCGCCACCAGGTTCCTCGAGCTGAAATTAGTCATCATATCTCAAGCTGTGATGACAGAAGTTGTATTG AGCAAGATGTTGTCAACCAAACCAGGAGCCTTAGACAAGAGACTCTGGCTGAGAGCACTTGGCAGTGCCCTCCTTGCGATGAAGACTGGG ATAAAGATTTGTGGGAGCAGACCAGCACCCCATTTGTCTGGGGCACAACTCACTACTCTGACAACAACAGCCCTGCGAGCAACATAGTTA CAGAACATAAGAATAACCTGGCTTCAGGCATGCGAGTTCCCAAATCTCTGCCGTATGTTCTGCCATGGAAAAACAATGGAAATGCACAGT AACTGAATACCTATCTCATCAAATGCCAGACCCTAGAAGACTGTTGCTTCTTCTTCTACCAGTGGGTTCTCATTTTCCTCCTAATCTAAT TATAGAATGGTAAACTCCCTGTGACTTTCCAAACTGACAAGCACACTTTTTTCCTCCCCCCTTGAATCCTCATTTAATGCAAGAACCCTC >In-frame_MAML3_ENST00000509479_chr4_141074014_-_GTSF1_ENST00000305879_chr12_54857081_-_1929nt ACTCCGCTGGCATGGAGGAGGAGGAGGAGGTGGAGGAGCGAGAGGAGGAGGAGGAGGCGGCGGCGGCGGCGGCGGCGAGCAGTTGATCAT TGTGATGGTGGCAGGAGCAGCGGCGGCAGCGGCAGCCCAGCCGAGCGTTAGGTGCTGCTCTCTGCGCGGCGTTTTGCAAAGGACTTCACC GATCTACTTTTGCAGTCGCCTCGGACTGTCCATGTGTTTACTTCCCCCAGCCCGAGGATTCGATATCTAGGTTCCTGTGAAATGCAACTG AGCAGCCAAAGTACTTTGAGAACACGGGGCGGCATAAACACCAAAACTTTTTTGTGGAAGGAAAATGCAATAAGCAAGCTTGCCGTTTTC CGATGCGGTGTGGAGTGAGTGTGTGTCGCGCGTGTCCGCACTGGAGGCATATGCTTGTGTGTGTACATGGGGTGTGTTTTTCGGTATGTA GGGAGAAAATGCTTGCCAACCACCGGAAATCTCCTGGAATTTATTAGAAAATAATGGATTATAAAAAGAAGGCAAGCAAGGAGCGGATCT CCCCTTGAGTTGCAACCCGATTTGCTGCTGGCTCAGTTTGTTGTGATTCTTTTTGTTGATAGGTGTCTGATGGTATTCCGATAACGTTCC CCCCTTTTCTTCCCCTTGAGCTTTTACAGTTTAAAAAAAGGAAACAAAAACCACCCCAAAATCTCCCCCCCCGTTTTTTTCGCCCCGTCG GGATCGCCGTTTCCATCCATGTGCTTGCGTCTCCCCCGCGTTCCACTTAAACTATTTTAATCCTTGGACCCAAGGAGGAGGCTGATAGGG GGGTGGATAAAAAAAGTTCTTCCAAAATAGTGTGCCCGGGGAGCAGGATGGGGGATTTCGCAGCCCCCGCTGCTGCCGCGAATGGCAGTA GTATTTGCATCAACAGTAGCCTGAACAGCAGCCTCGGCGGGGCCGGGATCGGTGTGAATAATACTCCCAATAGTACTCCCGCTGCTCCGA GTAGCAATCACCCGGCAGCCGGTGGATGCGGCGGCTCCGGGGGCCCCGGCGGCGGTTCGGCGGCCGTTCCCAAGCACAGCACCGTGGTGG AGCGGCTCCGCCAGCGCATCGAGGGCTGCCGTCGGCACCACGTCAACTGCGAGAACAGGTACCAGCAGGCTCAGGTGGAGCAGCTGGAGC TGGAGCGCCGGGACACCGTGAGCCTCTACCAGCGGACCCTGGAGCAGAGGGCCAAGAAATCGGGCGCCGGCACCGGCAAACAGCAGCACC CGAGCAAACCCCAGCAAGATGCGGAGGCTGCCTCGGCGGAGCAGAGGAACCACACGCTGATCATGAATCATCCTGATGTTGCAAGCAAAT TGGCTACTTGTCCCTTCAATGCTCGCCACCAGGTTCCTCGAGCTGAAATTAGTCATCATATCTCAAGCTGTGATGACAGAAGTTGTATTG AGCAAGATGTTGTCAACCAAACCAGGAGCCTTAGACAAGAGACTCTGGCTGAGAGCACTTGGCAGTGCCCTCCTTGCGATGAAGACTGGG ATAAAGATTTGTGGGAGCAGACCAGCACCCCATTTGTCTGGGGCACAACTCACTACTCTGACAACAACAGCCCTGCGAGCAACATAGTTA CAGAACATAAGAATAACCTGGCTTCAGGCATGCGAGTTCCCAAATCTCTGCCGTATGTTCTGCCATGGAAAAACAATGGAAATGCACAGT AACTGAATACCTATCTCATCAAATGCCAGACCCTAGAAGACTGTTGCTTCTTCTTCTACCAGTGGGTTCTCATTTTCCTCCTAATCTAAT TATAGAATGGTAAACTCCCTGTGACTTTCCAAACTGACAAGCACACTTTTTTCCTCCCCCCTTGAATCCTCATTTAATGCAAGAACCCTC |
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FusionGenePPI for MAML3_GTSF1 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| MAML3 | MAML1, NOTCH1, NFX1, SUPT5H, RAI1, ZBTB1, SCMH1, ZZZ3, RBPJ | GTSF1 | HSPB1, RGP1, MAPK14 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for MAML3_GTSF1 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for MAML3_GTSF1 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | MAML3 | C0010606 | Adenoid Cystic Carcinoma | 1 | CTD_human |
| Hgene | MAML3 | C0018798 | Congenital Heart Defects | 1 | CTD_human |
| Hgene | MAML3 | C1261473 | Sarcoma | 1 | CTD_human |
| Hgene | MAML3 | C1710096 | Sinonasal undifferentiated carcinoma | 1 | CTD_human |
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