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Fusion gene ID: 20693 |
FusionGeneSummary for MAMDC2_MRPS28 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: MAMDC2_MRPS28 | Fusion gene ID: 20693 | Hgene | Tgene | Gene symbol | MAMDC2 | MRPS28 | Gene ID | 256691 | 60488 |
| Gene name | MAM domain containing 2 | mitochondrial ribosomal protein S35 | |
| Synonyms | - | HDCMD11P|MDS023|MRP-S28|MRPS28 | |
| Cytomap | 9q21.12 | 12p11.22 | |
| Type of gene | protein-coding | protein-coding | |
| Description | MAM domain-containing protein 2MAM domain-containing proteoglycanmamcan | 28S ribosomal protein S35, mitochondrial28S ribosomal protein S28, mitochondrialMRP-S35S28mtS35mtmitochondrial ribosomal protein S28mitochondrial small ribosomal subunit protein mS35 | |
| Modification date | 20180522 | 20180523 | |
| UniProtAcc | Q7Z304 | Q9Y2Q9 | |
| Ensembl transtripts involved in fusion gene | ENST00000377182, ENST00000460688, | ENST00000276585, ENST00000521434, ENST00000521605, ENST00000522987, | |
| Fusion gene scores | * DoF score | 2 X 1 X 1=2 | 2 X 1 X 2=4 |
| # samples | 1 | 2 | |
| ** MAII score | log2(1/2*10)=2.32192809488736 | log2(2/4*10)=2.32192809488736 | |
| Context | PubMed: MAMDC2 [Title/Abstract] AND MRPS28 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | HNSC | TCGA-BA-6868-01B | MAMDC2 | chr9 | 72746528 | + | MRPS28 | chr8 | 80831383 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| Frame-shift | ENST00000377182 | ENST00000276585 | MAMDC2 | chr9 | 72746528 | + | MRPS28 | chr8 | 80831383 | - |
| In-frame | ENST00000377182 | ENST00000521434 | MAMDC2 | chr9 | 72746528 | + | MRPS28 | chr8 | 80831383 | - |
| Frame-shift | ENST00000377182 | ENST00000521605 | MAMDC2 | chr9 | 72746528 | + | MRPS28 | chr8 | 80831383 | - |
| 5CDS-intron | ENST00000377182 | ENST00000522987 | MAMDC2 | chr9 | 72746528 | + | MRPS28 | chr8 | 80831383 | - |
| intron-3CDS | ENST00000460688 | ENST00000276585 | MAMDC2 | chr9 | 72746528 | + | MRPS28 | chr8 | 80831383 | - |
| intron-3CDS | ENST00000460688 | ENST00000521434 | MAMDC2 | chr9 | 72746528 | + | MRPS28 | chr8 | 80831383 | - |
| intron-3CDS | ENST00000460688 | ENST00000521605 | MAMDC2 | chr9 | 72746528 | + | MRPS28 | chr8 | 80831383 | - |
| intron-intron | ENST00000460688 | ENST00000522987 | MAMDC2 | chr9 | 72746528 | + | MRPS28 | chr8 | 80831383 | - |
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FusionProtFeatures for MAMDC2_MRPS28 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| MAMDC2 | MRPS28 |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for MAMDC2_MRPS28 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| >In-frame_MAMDC2_ENST00000377182_chr9_72746528_+_MRPS28_ENST00000521434_chr8_80831383_-_387aa MLLRGVLLALQALQLAGALDLPAGSCAFEESTCGFDSVLASLPWILNEEGHYIYVDTSFGKQGEKAVLLSPDLQAEEWSCLRLVYQITTS SESLSDPSQLNLYMRFEDESFDRLLWSAKEPSDSWLIASLDLQNSSKKFKILIEGVLGQGNTASIALFEIKMTTGYCIECDFEENHLCGF VNRWNPNVNWFVGGGSIRNVHSILPQDHTFKSELGHYMYVDSVYVKHFQEVAQLISPLTTAPMAGCLSFYYQIQQGNDNVFSLYTRDVAG LYEEIWKADRPGNAAWNLAEVEFSAPYPMEVIFEVAFNGPKGGYVALDDISFSPVHCQNQTGNTRKEPGSGCGYXILNLRLGSWEQQQIQ |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| >In-frame_MAMDC2_ENST00000377182_chr9_72746528_+_MRPS28_ENST00000521434_chr8_80831383_-_1163nt ATGCTGTTAAGGGGCGTCCTCCTGGCGTTGCAAGCCCTGCAGCTCGCCGGTGCCCTCGACCTGCCCGCTGGGTCCTGTGCCTTTGAAGAG AGCACTTGCGGCTTTGACTCCGTGTTGGCCTCTCTGCCGTGGATTTTAAATGAGGAAGGCCATTACATTTATGTGGATACCTCCTTTGGC AAGCAGGGGGAGAAAGCTGTGCTGCTAAGTCCTGACTTACAGGCTGAGGAATGGAGCTGCCTCCGTTTGGTCTACCAGATAACCACATCT TCGGAGTCTCTGTCAGATCCCAGCCAGCTGAACCTCTACATGAGATTTGAAGATGAAAGCTTTGATCGCTTGCTTTGGTCAGCTAAGGAA CCTTCAGACAGCTGGCTCATAGCCAGCTTGGATTTGCAAAACAGTTCCAAGAAATTCAAGATTTTAATAGAAGGTGTACTAGGACAGGGA AACACAGCCAGCATCGCACTATTTGAAATCAAGATGACAACCGGCTACTGTATTGAATGTGACTTTGAAGAAAATCATCTCTGTGGCTTT GTGAACCGCTGGAATCCCAATGTGAACTGGTTTGTTGGAGGAGGAAGTATTCGGAATGTCCACTCCATTCTCCCACAGGATCACACCTTC AAGAGTGAACTGGGCCACTACATGTACGTGGACTCAGTTTATGTGAAGCACTTCCAGGAGGTGGCACAGCTCATCTCCCCGTTGACCACG GCCCCCATGGCTGGCTGCCTGTCATTTTATTACCAGATCCAGCAGGGGAATGACAATGTCTTTTCCCTTTACACTCGGGATGTGGCTGGC CTTTACGAGGAAATCTGGAAAGCAGACAGGCCAGGGAATGCTGCCTGGAACCTTGCGGAGGTCGAGTTCAGTGCTCCTTACCCCATGGAG GTTATTTTTGAAGTTGCTTTCAATGGTCCCAAGGGAGGTTATGTTGCCCTGGATGATATTTCATTCTCTCCTGTTCACTGCCAGAATCAG ACAGGAAATACCAGAAAGGAACCAGGGTCCGGTTGCGGCTATTAGATCTTGAACTTACGTCTAGGTTCCTGGGAGCAACAACAGATACAA |
| * Fusion transcript sequences (Full-length transcript). |
| >In-frame_MAMDC2_ENST00000377182_chr9_72746528_+_MRPS28_ENST00000521434_chr8_80831383_-_1820nt AAATTTTCCTCCAGGCTGTCCTTGGAGAATTCCACCCTCTTTCATTCTGGGGAGAAGAAGTTAAAATTAGGGCCAGCCCTGCGGGACTGA CATGCCAGATGCAGGGAAGCTGTCCCCAGAAATAAGCGAGTTCCCACCGCGGCTGGGCGGGGCGGGAGCCTCGGGTCCCAACCCAGCGGA GGGACTCCTGGAAGGCCTGCCCCTTCCAAGTGTCTGCAAGGGCTCTGGTCCCAAGCTTTAAAATCCTGAGCGAAGGCACTGCGGGCCGAC CTCTCCTCTCCCAGCCAGTCGTGGCTGGCCTTTCAAAGTGTGCAGTTGTCTCCTCCCTGTCCAGCCCCATCGTCGCCCAGGACCAGCTGG GCCGCGGTCTGACCTGAGGCTGCTGCTCAGCGCCGGGGCGCTGGCGCTCTCCATTCGAGCACCTTCCAGCATACCGCTCGGCTCCGGGAG CCGCTCTGCAAAGTTGGGCAGCTCAGAGCGCAAGCTTTGCCTCTCGACTTCTCCCTCCTTGGGTCCCCGGCGCCCCCGCCTCCCACGATC CCTTTCACTAGGAGCAGCCAGTCCCAGCGGGCTGGCAACTTGCACCCCTTCCTAGTCATCCTCCCTGAAACGCGACCATGCTGTTAAGGG GCGTCCTCCTGGCGTTGCAAGCCCTGCAGCTCGCCGGTGCCCTCGACCTGCCCGCTGGGTCCTGTGCCTTTGAAGAGAGCACTTGCGGCT TTGACTCCGTGTTGGCCTCTCTGCCGTGGATTTTAAATGAGGAAGGCCATTACATTTATGTGGATACCTCCTTTGGCAAGCAGGGGGAGA AAGCTGTGCTGCTAAGTCCTGACTTACAGGCTGAGGAATGGAGCTGCCTCCGTTTGGTCTACCAGATAACCACATCTTCGGAGTCTCTGT CAGATCCCAGCCAGCTGAACCTCTACATGAGATTTGAAGATGAAAGCTTTGATCGCTTGCTTTGGTCAGCTAAGGAACCTTCAGACAGCT GGCTCATAGCCAGCTTGGATTTGCAAAACAGTTCCAAGAAATTCAAGATTTTAATAGAAGGTGTACTAGGACAGGGAAACACAGCCAGCA TCGCACTATTTGAAATCAAGATGACAACCGGCTACTGTATTGAATGTGACTTTGAAGAAAATCATCTCTGTGGCTTTGTGAACCGCTGGA ATCCCAATGTGAACTGGTTTGTTGGAGGAGGAAGTATTCGGAATGTCCACTCCATTCTCCCACAGGATCACACCTTCAAGAGTGAACTGG GCCACTACATGTACGTGGACTCAGTTTATGTGAAGCACTTCCAGGAGGTGGCACAGCTCATCTCCCCGTTGACCACGGCCCCCATGGCTG GCTGCCTGTCATTTTATTACCAGATCCAGCAGGGGAATGACAATGTCTTTTCCCTTTACACTCGGGATGTGGCTGGCCTTTACGAGGAAA TCTGGAAAGCAGACAGGCCAGGGAATGCTGCCTGGAACCTTGCGGAGGTCGAGTTCAGTGCTCCTTACCCCATGGAGGTTATTTTTGAAG TTGCTTTCAATGGTCCCAAGGGAGGTTATGTTGCCCTGGATGATATTTCATTCTCTCCTGTTCACTGCCAGAATCAGACAGGAAATACCA GAAAGGAACCAGGGTCCGGTTGCGGCTATTAGATCTTGAACTTACGTCTAGGTTCCTGGGAGCAACAACAGATACAACTGTACTAGAGGC TAATGCAGTTCTCTTGGGAATCCAGGAGAGTAAAGACTCAAGATCGAAAGAAGAACATCATGAAAAATAAATGAACTTTGCTTAGTGGAT |
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FusionGenePPI for MAMDC2_MRPS28 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| MAMDC2 | EIF4G1, RNASEH2A, TK1, TAB1, CDAN1 | MRPS28 | ICT1, CAND1, MRPL32, MRPL13, MRPL53, MRPL41, MRPS26, MRPS9, MRPL12, MRPS18B, MRPL42, SCP2, CDV3, SRPRB, TIAL1, HNRNPU, ILF2, NDUFA7, NPC1, NDUFB6, HNRNPM, RBM27, RPS28, HNRNPR, SLC25A10, PQBP1, NDUFB9, RPS19, MDH2, ABCC2, SYNCRIP, FN1, C1QBP, PARK2, GRSF1, TP53, TUBGCP3, FBXW11, MRPS2, TRMT10B, MRPS31, HNRNPA1, MRPS22, MRPS27, DAP3, PTCD3, HIST1H3E, ERBB3, ZNF746, CDC14B, PTP4A1, MRPS34, MRPS15, MRPS11, RBM3, CFAP20 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for MAMDC2_MRPS28 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for MAMDC2_MRPS28 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Tgene | MRPS28 | C1458155 | Mammary Neoplasms | 1 | CTD_human |
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