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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 20685

FusionGeneSummary for MALSU1_GPNMB

check button Fusion gene summary
Fusion gene informationFusion gene name: MALSU1_GPNMB
Fusion gene ID: 20685
HgeneTgene
Gene symbol

MALSU1

GPNMB

Gene ID

115416

10457

Gene namemitochondrial assembly of ribosomal large subunit 1glycoprotein nmb
SynonymsC7orf30|mtRsfAHGFIN|NMB|PLCA3
Cytomap

7p15.3

7p15.3

Type of geneprotein-codingprotein-coding
Descriptionmitochondrial assembly of ribosomal large subunit protein 1transmembrane glycoprotein NMBglycoprotein (transmembrane) nmbglycoprotein nmb-like proteinglycoprotein nonmetastatic melanoma protein Bhematopoietic growth factor inducible neurokinin-1osteoactivintransmembrane glycoprotein HGFIN
Modification date2018052320180523
UniProtAcc

Q96EH3

Q14956

Ensembl transtripts involved in fusion geneENST00000479974, ENST00000466681, 
ENST00000258733, ENST00000381990, 
ENST00000409458, ENST00000539136, 
ENST00000453162, ENST00000478451, 
Fusion gene scores* DoF score2 X 2 X 2=83 X 3 X 3=27
# samples 23
** MAII scorelog2(2/8*10)=1.32192809488736log2(3/27*10)=0.15200309344505
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
Context

PubMed: MALSU1 [Title/Abstract] AND GPNMB [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneMALSU1

GO:0070130

negative regulation of mitochondrial translation

22829778

TgeneGPNMB

GO:0001818

negative regulation of cytokine production

19350579

TgeneGPNMB

GO:0001934

positive regulation of protein phosphorylation

22891158

TgeneGPNMB

GO:0030335

positive regulation of cell migration

20711474

TgeneGPNMB

GO:0031954

positive regulation of protein autophosphorylation

19350579

TgeneGPNMB

GO:0034103

regulation of tissue remodeling

25010402

TgeneGPNMB

GO:0042130

negative regulation of T cell proliferation

19350579

TgeneGPNMB

GO:2000134

negative regulation of G1/S transition of mitotic cell cycle

19350579


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGALDSKCMTCGA-BF-AAP1-01AMALSU1chr7

23347568

+GPNMBchr7

23306136

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
intron-3CDSENST00000479974ENST00000258733MALSU1chr7

23347568

+GPNMBchr7

23306136

+
intron-3CDSENST00000479974ENST00000381990MALSU1chr7

23347568

+GPNMBchr7

23306136

+
intron-intronENST00000479974ENST00000409458MALSU1chr7

23347568

+GPNMBchr7

23306136

+
intron-intronENST00000479974ENST00000539136MALSU1chr7

23347568

+GPNMBchr7

23306136

+
intron-intronENST00000479974ENST00000453162MALSU1chr7

23347568

+GPNMBchr7

23306136

+
intron-intronENST00000479974ENST00000478451MALSU1chr7

23347568

+GPNMBchr7

23306136

+
In-frameENST00000466681ENST00000258733MALSU1chr7

23347568

+GPNMBchr7

23306136

+
In-frameENST00000466681ENST00000381990MALSU1chr7

23347568

+GPNMBchr7

23306136

+
5CDS-intronENST00000466681ENST00000409458MALSU1chr7

23347568

+GPNMBchr7

23306136

+
5CDS-intronENST00000466681ENST00000539136MALSU1chr7

23347568

+GPNMBchr7

23306136

+
5CDS-intronENST00000466681ENST00000453162MALSU1chr7

23347568

+GPNMBchr7

23306136

+
5CDS-intronENST00000466681ENST00000478451MALSU1chr7

23347568

+GPNMBchr7

23306136

+

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FusionProtFeatures for MALSU1_GPNMB


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
MALSU1

Q96EH3

GPNMB

Q14956

May function as a ribosomal silencing factor. Additionto isolated mitochondrial ribosomal subunits partially inhibitstranslation. Interacts with mitochondrial ribosomal protein L14(MRPL14), probably blocking formation of intersubunit bridge B8,preventing association of the 28S and 39S ribosomal subunits andthe formation of functional ribosomes, thus repressingtranslation. May also participate in the assembly and/orregulation of the stability of the large subunit of themitochondrial ribosome. {ECO:0000269|PubMed:22238376}. Could be a melanogenic enzyme. {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for MALSU1_GPNMB


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for MALSU1_GPNMB


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
MALSU1ICT1, CHMP2B, SSBP1, DCTD, MRPL43, MRPL28, HNRNPDL, ZC3H3, MRPL4, HNRNPA1, MRPL39, RBMX, MRPL37, MRPS30, MRPL47, EXOSC2, MRPL41, MRPL50, MRPL10, MRPL42, DDX28, MRPL35, MRPL12, PDGFB, RBM42, GNRH1, CIRBP, MCAT, PHF19, RNMTL1, JPH4, ZNF274, TRIM25GPNMBITSN2, SMAD4, IL31RA, TFEB, FBXL4, LINC01139, EGFR


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for MALSU1_GPNMB


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for MALSU1_GPNMB


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
TgeneGPNMBC0009404Colorectal Neoplasms2CTD_human
TgeneGPNMBC0023893Liver Cirrhosis, Experimental1CTD_human
TgeneGPNMBC0162557Liver Failure, Acute1CTD_human
TgeneGPNMBC1458155Mammary Neoplasms1CTD_human
TgeneGPNMBC2609414Acute kidney injury1CTD_human