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Fusion gene ID: 20685 |
FusionGeneSummary for MALSU1_GPNMB |
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Fusion gene information | Fusion gene name: MALSU1_GPNMB | Fusion gene ID: 20685 | Hgene | Tgene | Gene symbol | MALSU1 | GPNMB | Gene ID | 115416 | 10457 |
Gene name | mitochondrial assembly of ribosomal large subunit 1 | glycoprotein nmb | |
Synonyms | C7orf30|mtRsfA | HGFIN|NMB|PLCA3 | |
Cytomap | 7p15.3 | 7p15.3 | |
Type of gene | protein-coding | protein-coding | |
Description | mitochondrial assembly of ribosomal large subunit protein 1 | transmembrane glycoprotein NMBglycoprotein (transmembrane) nmbglycoprotein nmb-like proteinglycoprotein nonmetastatic melanoma protein Bhematopoietic growth factor inducible neurokinin-1osteoactivintransmembrane glycoprotein HGFIN | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | Q96EH3 | Q14956 | |
Ensembl transtripts involved in fusion gene | ENST00000479974, ENST00000466681, | ENST00000258733, ENST00000381990, ENST00000409458, ENST00000539136, ENST00000453162, ENST00000478451, | |
Fusion gene scores | * DoF score | 2 X 2 X 2=8 | 3 X 3 X 3=27 |
# samples | 2 | 3 | |
** MAII score | log2(2/8*10)=1.32192809488736 | log2(3/27*10)=0.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: MALSU1 [Title/Abstract] AND GPNMB [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | MALSU1 | GO:0070130 | negative regulation of mitochondrial translation | 22829778 |
Tgene | GPNMB | GO:0001818 | negative regulation of cytokine production | 19350579 |
Tgene | GPNMB | GO:0001934 | positive regulation of protein phosphorylation | 22891158 |
Tgene | GPNMB | GO:0030335 | positive regulation of cell migration | 20711474 |
Tgene | GPNMB | GO:0031954 | positive regulation of protein autophosphorylation | 19350579 |
Tgene | GPNMB | GO:0034103 | regulation of tissue remodeling | 25010402 |
Tgene | GPNMB | GO:0042130 | negative regulation of T cell proliferation | 19350579 |
Tgene | GPNMB | GO:2000134 | negative regulation of G1/S transition of mitotic cell cycle | 19350579 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | SKCM | TCGA-BF-AAP1-01A | MALSU1 | chr7 | 23347568 | + | GPNMB | chr7 | 23306136 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-3CDS | ENST00000479974 | ENST00000258733 | MALSU1 | chr7 | 23347568 | + | GPNMB | chr7 | 23306136 | + |
intron-3CDS | ENST00000479974 | ENST00000381990 | MALSU1 | chr7 | 23347568 | + | GPNMB | chr7 | 23306136 | + |
intron-intron | ENST00000479974 | ENST00000409458 | MALSU1 | chr7 | 23347568 | + | GPNMB | chr7 | 23306136 | + |
intron-intron | ENST00000479974 | ENST00000539136 | MALSU1 | chr7 | 23347568 | + | GPNMB | chr7 | 23306136 | + |
intron-intron | ENST00000479974 | ENST00000453162 | MALSU1 | chr7 | 23347568 | + | GPNMB | chr7 | 23306136 | + |
intron-intron | ENST00000479974 | ENST00000478451 | MALSU1 | chr7 | 23347568 | + | GPNMB | chr7 | 23306136 | + |
In-frame | ENST00000466681 | ENST00000258733 | MALSU1 | chr7 | 23347568 | + | GPNMB | chr7 | 23306136 | + |
In-frame | ENST00000466681 | ENST00000381990 | MALSU1 | chr7 | 23347568 | + | GPNMB | chr7 | 23306136 | + |
5CDS-intron | ENST00000466681 | ENST00000409458 | MALSU1 | chr7 | 23347568 | + | GPNMB | chr7 | 23306136 | + |
5CDS-intron | ENST00000466681 | ENST00000539136 | MALSU1 | chr7 | 23347568 | + | GPNMB | chr7 | 23306136 | + |
5CDS-intron | ENST00000466681 | ENST00000453162 | MALSU1 | chr7 | 23347568 | + | GPNMB | chr7 | 23306136 | + |
5CDS-intron | ENST00000466681 | ENST00000478451 | MALSU1 | chr7 | 23347568 | + | GPNMB | chr7 | 23306136 | + |
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FusionProtFeatures for MALSU1_GPNMB |
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Hgene | Tgene |
MALSU1 | GPNMB |
May function as a ribosomal silencing factor. Additionto isolated mitochondrial ribosomal subunits partially inhibitstranslation. Interacts with mitochondrial ribosomal protein L14(MRPL14), probably blocking formation of intersubunit bridge B8,preventing association of the 28S and 39S ribosomal subunits andthe formation of functional ribosomes, thus repressingtranslation. May also participate in the assembly and/orregulation of the stability of the large subunit of themitochondrial ribosome. {ECO:0000269|PubMed:22238376}. | Could be a melanogenic enzyme. {ECO:0000250}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for MALSU1_GPNMB |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for MALSU1_GPNMB |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
MALSU1 | ICT1, CHMP2B, SSBP1, DCTD, MRPL43, MRPL28, HNRNPDL, ZC3H3, MRPL4, HNRNPA1, MRPL39, RBMX, MRPL37, MRPS30, MRPL47, EXOSC2, MRPL41, MRPL50, MRPL10, MRPL42, DDX28, MRPL35, MRPL12, PDGFB, RBM42, GNRH1, CIRBP, MCAT, PHF19, RNMTL1, JPH4, ZNF274, TRIM25 | GPNMB | ITSN2, SMAD4, IL31RA, TFEB, FBXL4, LINC01139, EGFR |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for MALSU1_GPNMB |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for MALSU1_GPNMB |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | GPNMB | C0009404 | Colorectal Neoplasms | 2 | CTD_human |
Tgene | GPNMB | C0023893 | Liver Cirrhosis, Experimental | 1 | CTD_human |
Tgene | GPNMB | C0162557 | Liver Failure, Acute | 1 | CTD_human |
Tgene | GPNMB | C1458155 | Mammary Neoplasms | 1 | CTD_human |
Tgene | GPNMB | C2609414 | Acute kidney injury | 1 | CTD_human |