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Fusion gene ID: 20136 |
FusionGeneSummary for LRP1_TMEM194A |
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Fusion gene information | Fusion gene name: LRP1_TMEM194A | Fusion gene ID: 20136 | Hgene | Tgene | Gene symbol | LRP1 | TMEM194A | Gene ID | 10438 | 23306 |
Gene name | C1D nuclear receptor corepressor | nuclear envelope integral membrane protein 1 | |
Synonyms | LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D | TMEM194|TMEM194A | |
Cytomap | 2p14 | 12q13.3 | |
Type of gene | protein-coding | protein-coding | |
Description | nuclear nucleic acid-binding protein C1DC1D DNA-binding proteinC1D nuclear receptor co-repressornuclear DNA-binding proteinsmall unique nuclear receptor co-repressorsmall unique nuclear receptor corepressor | nuclear envelope integral membrane protein 1transmembrane protein 194transmembrane protein 194A | |
Modification date | 20180519 | 20180523 | |
UniProtAcc | Q07954 | ||
Ensembl transtripts involved in fusion gene | ENST00000553277, ENST00000243077, ENST00000338962, ENST00000554174, ENST00000553446, | ENST00000379391, ENST00000300128, ENST00000553654, | |
Fusion gene scores | * DoF score | 16 X 14 X 7=1568 | 1 X 1 X 1=1 |
# samples | 17 | 1 | |
** MAII score | log2(17/1568*10)=-3.20531890797751 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(1/1*10)=3.32192809488736 | |
Context | PubMed: LRP1 [Title/Abstract] AND TMEM194A [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | SKCM | TCGA-GF-A769-01A | LRP1 | chr12 | 57537581 | + | TMEM194A | chr12 | 57466695 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000553277 | ENST00000379391 | LRP1 | chr12 | 57537581 | + | TMEM194A | chr12 | 57466695 | - |
In-frame | ENST00000553277 | ENST00000300128 | LRP1 | chr12 | 57537581 | + | TMEM194A | chr12 | 57466695 | - |
5CDS-5UTR | ENST00000553277 | ENST00000553654 | LRP1 | chr12 | 57537581 | + | TMEM194A | chr12 | 57466695 | - |
In-frame | ENST00000243077 | ENST00000379391 | LRP1 | chr12 | 57537581 | + | TMEM194A | chr12 | 57466695 | - |
In-frame | ENST00000243077 | ENST00000300128 | LRP1 | chr12 | 57537581 | + | TMEM194A | chr12 | 57466695 | - |
5CDS-5UTR | ENST00000243077 | ENST00000553654 | LRP1 | chr12 | 57537581 | + | TMEM194A | chr12 | 57466695 | - |
In-frame | ENST00000338962 | ENST00000379391 | LRP1 | chr12 | 57537581 | + | TMEM194A | chr12 | 57466695 | - |
In-frame | ENST00000338962 | ENST00000300128 | LRP1 | chr12 | 57537581 | + | TMEM194A | chr12 | 57466695 | - |
5CDS-5UTR | ENST00000338962 | ENST00000553654 | LRP1 | chr12 | 57537581 | + | TMEM194A | chr12 | 57466695 | - |
In-frame | ENST00000554174 | ENST00000379391 | LRP1 | chr12 | 57537581 | + | TMEM194A | chr12 | 57466695 | - |
In-frame | ENST00000554174 | ENST00000300128 | LRP1 | chr12 | 57537581 | + | TMEM194A | chr12 | 57466695 | - |
5CDS-5UTR | ENST00000554174 | ENST00000553654 | LRP1 | chr12 | 57537581 | + | TMEM194A | chr12 | 57466695 | - |
intron-3CDS | ENST00000553446 | ENST00000379391 | LRP1 | chr12 | 57537581 | + | TMEM194A | chr12 | 57466695 | - |
intron-3CDS | ENST00000553446 | ENST00000300128 | LRP1 | chr12 | 57537581 | + | TMEM194A | chr12 | 57466695 | - |
intron-5UTR | ENST00000553446 | ENST00000553654 | LRP1 | chr12 | 57537581 | + | TMEM194A | chr12 | 57466695 | - |
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FusionProtFeatures for LRP1_TMEM194A |
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Hgene | Tgene |
LRP1 | TMEM194A |
Endocytic receptor involved in endocytosis and inphagocytosis of apoptotic cells. Required for early embryonicdevelopment. Involved in cellular lipid homeostasis. Involved inthe plasma clearance of chylomicron remnants and activated LRPAP1(alpha 2-macroglobulin), as well as the local metabolism ofcomplexes between plasminogen activators and their endogenousinhibitors. May modulate cellular events, such as APP metabolism,kinase-dependent intracellular signaling, neuronal calciumsignaling as well as neurotransmission (PubMed:11907044,PubMed:12888553, PubMed:12713657). Acts as an alpha-2-macroglobulin receptor (PubMed:26142438).{ECO:0000269|PubMed:11907044, ECO:0000269|PubMed:12713657,ECO:0000269|PubMed:12888553, ECO:0000269|PubMed:26142438}. (Microbial infection) Functions as a receptor forPseudomonas aeruginosa exotoxin A. {ECO:0000269|PubMed:1618748}. | Lectin that binds to various sugars: galactose > mannose= fucose > N-acetylglucosamine > N-acetylgalactosamine(PubMed:10224141). Acts as a chemoattractant, probably involved inthe regulation of cell migration (PubMed:28301481).{ECO:0000269|PubMed:10224141, ECO:0000269|PubMed:28301481}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 111_149 | 149 | 4545 | Domain | EGF-like 1 |
Hgene | LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 25_66 | 149 | 4545 | Domain | LDL-receptor class A 1 |
Hgene | LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 70_110 | 149 | 4545 | Domain | LDL-receptor class A 2 |
Tgene | >TMEM194A | chr12:57537581 | chr12:57466695 | ENST00000300128 | - | 0 | 9 | 186_297 | 42 | 445 | Region | A%3B required for its colocalization with lamins at the nuclear envelope |
Tgene | >TMEM194A | chr12:57537581 | chr12:57466695 | ENST00000300128 | - | 0 | 9 | 336_444 | 42 | 445 | Region | Required for nuclear localization |
Tgene | >TMEM194A | chr12:57537581 | chr12:57466695 | ENST00000379391 | - | 0 | 8 | 186_297 | 42 | 372 | Region | A%3B required for its colocalization with lamins at the nuclear envelope |
Tgene | >TMEM194A | chr12:57537581 | chr12:57466695 | ENST00000379391 | - | 0 | 8 | 336_444 | 42 | 372 | Region | Required for nuclear localization |
Tgene | >TMEM194A | chr12:57537581 | chr12:57466695 | ENST00000300128 | - | 0 | 9 | 161_181 | 42 | 445 | Transmembrane | Helical |
Tgene | >TMEM194A | chr12:57537581 | chr12:57466695 | ENST00000300128 | - | 0 | 9 | 186_206 | 42 | 445 | Transmembrane | Helical |
Tgene | >TMEM194A | chr12:57537581 | chr12:57466695 | ENST00000300128 | - | 0 | 9 | 216_236 | 42 | 445 | Transmembrane | Helical |
Tgene | >TMEM194A | chr12:57537581 | chr12:57466695 | ENST00000300128 | - | 0 | 9 | 245_265 | 42 | 445 | Transmembrane | Helical |
Tgene | >TMEM194A | chr12:57537581 | chr12:57466695 | ENST00000300128 | - | 0 | 9 | 289_309 | 42 | 445 | Transmembrane | Helical |
Tgene | >TMEM194A | chr12:57537581 | chr12:57466695 | ENST00000379391 | - | 0 | 8 | 161_181 | 42 | 372 | Transmembrane | Helical |
Tgene | >TMEM194A | chr12:57537581 | chr12:57466695 | ENST00000379391 | - | 0 | 8 | 186_206 | 42 | 372 | Transmembrane | Helical |
Tgene | >TMEM194A | chr12:57537581 | chr12:57466695 | ENST00000379391 | - | 0 | 8 | 216_236 | 42 | 372 | Transmembrane | Helical |
Tgene | >TMEM194A | chr12:57537581 | chr12:57466695 | ENST00000379391 | - | 0 | 8 | 245_265 | 42 | 372 | Transmembrane | Helical |
Tgene | >TMEM194A | chr12:57537581 | chr12:57466695 | ENST00000379391 | - | 0 | 8 | 289_309 | 42 | 372 | Transmembrane | Helical |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 1013_1053 | 149 | 4545 | Domain | LDL-receptor class A 7 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 1060_1099 | 149 | 4545 | Domain | LDL-receptor class A 8 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 1102_1142 | 149 | 4545 | Domain | LDL-receptor class A 9 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 1143_1182 | 149 | 4545 | Domain | LDL-receptor class A 10 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 1183_1222 | 149 | 4545 | Domain | EGF-like 5 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 1223_1262 | 149 | 4545 | Domain | EGF-like 6 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 150_189 | 149 | 4545 | Domain | EGF-like 2%3B calcium-binding |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 1536_1579 | 149 | 4545 | Domain | EGF-like 7 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 1846_1887 | 149 | 4545 | Domain | EGF-like 8 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 2155_2195 | 149 | 4545 | Domain | EGF-like 9 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 2478_2518 | 149 | 4545 | Domain | EGF-like 10 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 2522_2563 | 149 | 4545 | Domain | LDL-receptor class A 11 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 2564_2602 | 149 | 4545 | Domain | LDL-receptor class A 12 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 2603_2641 | 149 | 4545 | Domain | LDL-receptor class A 13 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 2642_2690 | 149 | 4545 | Domain | LDL-receptor class A 14 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 2694_2732 | 149 | 4545 | Domain | LDL-receptor class A 15 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 2732_2771 | 149 | 4545 | Domain | LDL-receptor class A 16 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 2772_2814 | 149 | 4545 | Domain | LDL-receptor class A 17 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 2816_2855 | 149 | 4545 | Domain | LDL-receptor class A 18 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 2856_2899 | 149 | 4545 | Domain | LDL-receptor class A 19 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 2902_2940 | 149 | 4545 | Domain | LDL-receptor class A 20 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 2941_2981 | 149 | 4545 | Domain | EGF-like 11 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 2982_3022 | 149 | 4545 | Domain | EGF-like 12%3B calcium-binding |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 3290_3331 | 149 | 4545 | Domain | EGF-like 13 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 3332_3371 | 149 | 4545 | Domain | LDL-receptor class A 21 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 3372_3410 | 149 | 4545 | Domain | LDL-receptor class A 22 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 3411_3450 | 149 | 4545 | Domain | LDL-receptor class A 23 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 3451_3491 | 149 | 4545 | Domain | LDL-receptor class A 24 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 3492_3533 | 149 | 4545 | Domain | LDL-receptor class A 25 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 3534_3572 | 149 | 4545 | Domain | LDL-receptor class A 26 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 3573_3611 | 149 | 4545 | Domain | LDL-receptor class A 27 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 3611_3649 | 149 | 4545 | Domain | LDL-receptor class A 28 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 3652_3692 | 149 | 4545 | Domain | LDL-receptor class A 29 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 3693_3733 | 149 | 4545 | Domain | LDL-receptor class A 30 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 3739_3778 | 149 | 4545 | Domain | LDL-receptor class A 31 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 3781_3823 | 149 | 4545 | Domain | EGF-like 14 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 3824_3861 | 149 | 4545 | Domain | EGF-like 15 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 4147_4183 | 149 | 4545 | Domain | EGF-like 16 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 4196_4232 | 149 | 4545 | Domain | EGF-like 17 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 4232_4268 | 149 | 4545 | Domain | EGF-like 18 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 4268_4304 | 149 | 4545 | Domain | EGF-like 19 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 4304_4340 | 149 | 4545 | Domain | EGF-like 20 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 4340_4375 | 149 | 4545 | Domain | EGF-like 21 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 4373_4409 | 149 | 4545 | Domain | EGF-like 22 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 474_520 | 149 | 4545 | Domain | EGF-like 3 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 803_843 | 149 | 4545 | Domain | EGF-like 4 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 852_892 | 149 | 4545 | Domain | LDL-receptor class A 3 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 893_933 | 149 | 4545 | Domain | LDL-receptor class A 4 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 934_973 | 149 | 4545 | Domain | LDL-receptor class A 5 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 974_1013 | 149 | 4545 | Domain | LDL-receptor class A 6 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 3940_3943 | 149 | 4545 | Motif | Recognition site for proteolytical processing |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 4502_4507 | 149 | 4545 | Motif | Note=NPXY motif |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 1309_1355 | 149 | 4545 | Repeat | Note=LDL-receptor class B 8 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 1356_1398 | 149 | 4545 | Repeat | Note=LDL-receptor class B 9 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 1399_1445 | 149 | 4545 | Repeat | Note=LDL-receptor class B 10 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 1446_1490 | 149 | 4545 | Repeat | Note=LDL-receptor class B 11 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 1491_1531 | 149 | 4545 | Repeat | Note=LDL-receptor class B 12 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 1627_1669 | 149 | 4545 | Repeat | Note=LDL-receptor class B 13 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 1670_1713 | 149 | 4545 | Repeat | Note=LDL-receptor class B 14 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 1714_1753 | 149 | 4545 | Repeat | Note=LDL-receptor class B 15 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 1754_1798 | 149 | 4545 | Repeat | Note=LDL-receptor class B 16 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 1934_1976 | 149 | 4545 | Repeat | Note=LDL-receptor class B 17 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 1977_2019 | 149 | 4545 | Repeat | Note=LDL-receptor class B 18 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 2020_2063 | 149 | 4545 | Repeat | Note=LDL-receptor class B 19 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 2064_2107 | 149 | 4545 | Repeat | Note=LDL-receptor class B 20 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 2253_2294 | 149 | 4545 | Repeat | Note=LDL-receptor class B 21 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 2295_2343 | 149 | 4545 | Repeat | Note=LDL-receptor class B 22 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 2344_2388 | 149 | 4545 | Repeat | Note=LDL-receptor class B 23 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 2389_2431 | 149 | 4545 | Repeat | Note=LDL-receptor class B 24 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 2432_2473 | 149 | 4545 | Repeat | Note=LDL-receptor class B 25 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 292_334 | 149 | 4545 | Repeat | Note=LDL-receptor class B 1 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 3069_3113 | 149 | 4545 | Repeat | Note=LDL-receptor class B 26 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 3114_3156 | 149 | 4545 | Repeat | Note=LDL-receptor class B 27 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 3157_3200 | 149 | 4545 | Repeat | Note=LDL-receptor class B 28 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 3201_3243 | 149 | 4545 | Repeat | Note=LDL-receptor class B 29 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 3244_3284 | 149 | 4545 | Repeat | Note=LDL-receptor class B 30 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 335_378 | 149 | 4545 | Repeat | Note=LDL-receptor class B 2 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 379_422 | 149 | 4545 | Repeat | Note=LDL-receptor class B 3 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 3912_3954 | 149 | 4545 | Repeat | Note=LDL-receptor class B 31 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 3970_4012 | 149 | 4545 | Repeat | Note=LDL-receptor class B 32 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 4013_4056 | 149 | 4545 | Repeat | Note=LDL-receptor class B 33 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 4057_4101 | 149 | 4545 | Repeat | Note=LDL-receptor class B 34 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 571_613 | 149 | 4545 | Repeat | Note=LDL-receptor class B 4 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 614_659 | 149 | 4545 | Repeat | Note=LDL-receptor class B 5 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 660_710 | 149 | 4545 | Repeat | Note=LDL-receptor class B 6 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 711_754 | 149 | 4545 | Repeat | Note=LDL-receptor class B 7 |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 20_4419 | 149 | 4545 | Topological domain | Extracellular |
Hgene | >LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 4420_4444 | 149 | 4545 | Transmembrane | Helical |
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FusionGeneSequence for LRP1_TMEM194A |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for LRP1_TMEM194A |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
LRP1 | SERPINE1, CANX, CALR, PDIA2, MMP14, KAT5, CALCR, SHC1, THBS1, GIPC1, MAPK8IP1, DLG4, MAPK8IP2, SYNJ2BP, NOS1AP, SCN3A, APBA2, DAB1, ITGB1BP1, ANAPC10, A2M, PDGFB, SRC, DAB2, MDK, F8, GULP1, PLAUR, PLAT, F9, LRPAP1, LPL, LIPC, SNX17, APBB1, USP3, CACNA1A, APOE, RIC8B, CC2D1A, SNRNP70, ANKS1B, PID1, HNRNPDL, MAPRE1, FBXO6, CUBN, CHFR, SKIL, RANBP9, APP, COPS5, EGFR, ZFP41, DIAPH1, FOXB1, KCTD18, INTS6, TNKS2, TNKS, FOXF2, BCKDHB, TUBB8, SAMD1, TUBA4A, TUBB3, LOXL2, MTG2, SLC25A6, SLC25A30, GATB, SMOC1, C17orf80, GSG2, NME4, HARS2, TUBA1A, TUBB4A, SLC25A23, LCOR, CCRN4L, FAM115A, SLC25A25, MTO1, C1orf85, PC, PTGES2, SLC26A6, GFPT2, GFPT1, HSPA5, RPL23, TUBB2A, NPC2, MTPAP, TUBB4B, RPUSD3, GNB2, NPRL3, FAM132B, ERAL1, GCNT1, TUBB2B, PTCD2, SENP1, MAP2K7, RTEL1, LGALS9 | TMEM194A | ELAVL1, LYPD3, KPNB1, MBOAT1, FOXL1, RGPD2, RGPD8, ADCY9, RGPD5, RAN, DLGAP5, RANBP2, ACAD11, GLRB, RANGAP1, PIP4K2A, PIP4K2B, UBE2I, B2M, METAP2, NOP58, SDAD1 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Hgene | LRP1 | chr12:57537581 | chr12:57466695 | ENST00000243077 | + | 4 | 89 | 4445_4544 | 149 | 4545 | MAFB |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for LRP1_TMEM194A |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Hgene | LRP1 | Q07954 | DB00031 | Tenecteplase | Prolow-density lipoprotein receptor-related protein 1 | biotech | approved |
Hgene | LRP1 | Q07954 | DB00025 | Antihemophilic factor, human recombinant | Prolow-density lipoprotein receptor-related protein 1 | biotech | approved|investigational |
Hgene | LRP1 | Q07954 | DB00100 | Coagulation Factor IX (Recombinant) | Prolow-density lipoprotein receptor-related protein 1 | biotech | approved|investigational |
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RelatedDiseases for LRP1_TMEM194A |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | LRP1 | C0036341 | Schizophrenia | 1 | CTD_human |
Hgene | LRP1 | C0041696 | Unipolar Depression | 1 | PSYGENET |
Hgene | LRP1 | C0149931 | Migraine Disorders | 1 | CTD_human |
Hgene | LRP1 | C0338480 | Common Migraine | 1 | CTD_human |
Hgene | LRP1 | C1269683 | Major Depressive Disorder | 1 | PSYGENET |