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Fusion gene ID: 20070 |
FusionGeneSummary for LRBA_TPRG1-AS2 |
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Fusion gene information | Fusion gene name: LRBA_TPRG1-AS2 | Fusion gene ID: 20070 | Hgene | Tgene | Gene symbol | LRBA | TPRG1-AS2 | Gene ID | 987 | 100874027 |
Gene name | LPS responsive beige-like anchor protein | TPRG1 antisense RNA 2 | |
Synonyms | BGL|CDC4L|CVID8|LAB300|LBA | - | |
Cytomap | 4q31.3 | 3q28 | |
Type of gene | protein-coding | ncRNA | |
Description | lipopolysaccharide-responsive and beige-like anchor proteinCDC4-like proteinLPS-responsive vesicle trafficking, beach and anchor containingvesicle trafficking, beach and anchor containing | TPRG1 antisense RNA 2 (non-protein coding) | |
Modification date | 20180519 | 20180329 | |
UniProtAcc | P50851 | ||
Ensembl transtripts involved in fusion gene | ENST00000535741, ENST00000510413, ENST00000503716, ENST00000357115, ENST00000507224, | ENST00000425454, | |
Fusion gene scores | * DoF score | 16 X 15 X 12=2880 | 1 X 1 X 1=1 |
# samples | 22 | 1 | |
** MAII score | log2(22/2880*10)=-3.71049338280502 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(1/1*10)=3.32192809488736 | |
Context | PubMed: LRBA [Title/Abstract] AND TPRG1-AS2 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | PRAD | TCGA-XA-A8JR-01A | LRBA | chr4 | 151935579 | - | TPRG1-AS2 | chr3 | 188956745 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-5UTR | ENST00000535741 | ENST00000425454 | LRBA | chr4 | 151935579 | - | TPRG1-AS2 | chr3 | 188956745 | - |
5CDS-5UTR | ENST00000510413 | ENST00000425454 | LRBA | chr4 | 151935579 | - | TPRG1-AS2 | chr3 | 188956745 | - |
intron-5UTR | ENST00000503716 | ENST00000425454 | LRBA | chr4 | 151935579 | - | TPRG1-AS2 | chr3 | 188956745 | - |
5CDS-5UTR | ENST00000357115 | ENST00000425454 | LRBA | chr4 | 151935579 | - | TPRG1-AS2 | chr3 | 188956745 | - |
5CDS-5UTR | ENST00000507224 | ENST00000425454 | LRBA | chr4 | 151935579 | - | TPRG1-AS2 | chr3 | 188956745 | - |
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FusionProtFeatures for LRBA_TPRG1-AS2 |
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Hgene | Tgene |
LRBA | TPRG1-AS2 |
May be involved in coupling signal transduction andvesicle trafficking to enable polarized secretion and/or membranedeposition of immune effector molecules. {ECO:0000250}. | Lectin that binds to various sugars: galactose > mannose= fucose > N-acetylglucosamine > N-acetylgalactosamine(PubMed:10224141). Acts as a chemoattractant, probably involved inthe regulation of cell migration (PubMed:28301481).{ECO:0000269|PubMed:10224141, ECO:0000269|PubMed:28301481}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for LRBA_TPRG1-AS2 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for LRBA_TPRG1-AS2 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
LRBA | TUSC2, NOTCH1, FN1, BAG3, CAST, KIF15, DCAF11, INPPL1, MLF2, VCP, MOV10, RIC3, CT55, PARP16, RD3, TMEM52B, MED4, TMEM17, TMEM216, NCR3LG1, PVR, FAM196A, EPHA1, GYPB, DLK2, TRIM25 | TPRG1-AS2 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for LRBA_TPRG1-AS2 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for LRBA_TPRG1-AS2 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | LRBA | C3553512 | IMMUNODEFICIENCY, COMMON VARIABLE, 8, WITH AUTOIMMUNITY | 1 | ORPHANET;UNIPROT |