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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 20032

FusionGeneSummary for LPP_F2

check button Fusion gene summary
Fusion gene informationFusion gene name: LPP_F2
Fusion gene ID: 20032
HgeneTgene
Gene symbol

LPP

F2

Gene ID

4026

2147

Gene nameLIM domain containing preferred translocation partner in lipomacoagulation factor II, thrombin
Synonyms-PT|RPRGL2|THPH1
Cytomap

3q27.3-q28

11p11.2

Type of geneprotein-codingprotein-coding
Descriptionlipoma-preferred partnerLIM proteinlipoma preferred partnerprothrombinprepro-coagulation factor IIprothrombin B-chainserine proteasethrombin factor II
Modification date2018051920180527
UniProtAcc

Q93052

P00734

Ensembl transtripts involved in fusion geneENST00000448637, ENST00000312675, 
ENST00000543006, ENST00000471917, 
ENST00000311907, ENST00000530231, 
Fusion gene scores* DoF score29 X 22 X 11=70182 X 2 X 2=8
# samples 372
** MAII scorelog2(37/7018*10)=-4.24546277188585
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(2/8*10)=1.32192809488736
Context

PubMed: LPP [Title/Abstract] AND F2 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgeneF2

GO:0001934

positive regulation of protein phosphorylation

7559487

TgeneF2

GO:0007166

cell surface receptor signaling pathway

1672265

TgeneF2

GO:0009611

response to wounding

9639571

TgeneF2

GO:0030168

platelet activation

9038223

TgeneF2

GO:0030194

positive regulation of blood coagulation

9038223

TgeneF2

GO:0032967

positive regulation of collagen biosynthetic process

9639571

TgeneF2

GO:0042730

fibrinolysis

12855810

TgeneF2

GO:0045861

negative regulation of proteolysis

1695900

TgeneF2

GO:0048712

negative regulation of astrocyte differentiation

1691280

TgeneF2

GO:0051281

positive regulation of release of sequestered calcium ion into cytosol

1672265|19052258

TgeneF2

GO:0051480

regulation of cytosolic calcium ion concentration

19052258

TgeneF2

GO:0051838

cytolysis by host of symbiont cells

20421939

TgeneF2

GO:0061844

antimicrobial humoral immune response mediated by antimicrobial peptide

20421939

TgeneF2

GO:0070945

neutrophil mediated killing of gram-negative bacterium

20421939

TgeneF2

GO:0090218

positive regulation of lipid kinase activity

11309392

TgeneF2

GO:1900016

negative regulation of cytokine production involved in inflammatory response

20421939

TgeneF2

GO:1900182

positive regulation of protein localization to nucleus

11309392

TgeneF2

GO:1900738

positive regulation of phospholipase C-activating G-protein coupled receptor signaling pathway

20164183

TgeneF2

GO:2000379

positive regulation of reactive oxygen species metabolic process

17275676


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGARVOVTCGA-13-0760-01ALPPchr3

188059507

+F2chr11

46741252

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5UTR-3CDSENST00000448637ENST00000311907LPPchr3

188059507

+F2chr11

46741252

+
5UTR-3CDSENST00000448637ENST00000530231LPPchr3

188059507

+F2chr11

46741252

+
intron-3CDSENST00000312675ENST00000311907LPPchr3

188059507

+F2chr11

46741252

+
intron-3CDSENST00000312675ENST00000530231LPPchr3

188059507

+F2chr11

46741252

+
5UTR-3CDSENST00000543006ENST00000311907LPPchr3

188059507

+F2chr11

46741252

+
5UTR-3CDSENST00000543006ENST00000530231LPPchr3

188059507

+F2chr11

46741252

+
intron-3CDSENST00000471917ENST00000311907LPPchr3

188059507

+F2chr11

46741252

+
intron-3CDSENST00000471917ENST00000530231LPPchr3

188059507

+F2chr11

46741252

+

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FusionProtFeatures for LPP_F2


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
LPP

Q93052

F2

P00734

May play a structural role at sites of cell adhesion inmaintaining cell shape and motility. In addition to thesestructural functions, it may also be implicated in signalingevents and activation of gene transcription. May be involved insignal transduction from cell adhesion sites to the nucleusallowing successful integration of signals arising from solublefactors and cell-cell adhesion sites. Also suggested to serve as ascaffold protein upon which distinct protein complexes areassembled in the cytoplasm and in the nucleus.{ECO:0000269|PubMed:10637295, ECO:0000269|Ref.2}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for LPP_F2


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for LPP_F2


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
LPPATP5J2, PPP2R1A, ELAVL1, EGLN2, VHL, CLNS1A, PNPO, HNRNPL, CPT1A, HSPA5, AGFG1, ALAD, ARPC3, ARPC4, CALR, DBNL, HSPBP1, IPO11, P3H1, DPP9, EFTUD1, FEN1, FKBP10, RPRD1B, SAE1, SURF2, UFM1, NIF3L1, NPLOC4, OGT, PPME1, PPP2R5D, RANGAP1, RDX, SH3GLB1, TPRKB, UBE3A, ZPR1, SUZ12, RNF2, COPS5, GMPPA, PICALM, NINL, XPO1, CDH1, PTPN21, PPP2R3A, WDYHV1, SERPINB2, PDLIM7, LPXN, CBLC, MRPL38, WASF3, MTNR1A, G3BP1, TESF2SERPINE1, FGA, SERPIND1, ITGA2B, PLAT, CPB2, THBD, SERPINB6, F5, SERPING1, THBS1, ALB, FN1, ST13, DDIT3, SPP1


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for LPP_F2


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status
TgeneF2P00734DB00001LepirudinProthrombinbiotechapproved
TgeneF2P00734DB06404Human C1-esterase inhibitorProthrombinbiotechapproved
TgeneF2P00734DB06695Dabigatran etexilateProthrombinsmall moleculeapproved
TgeneF2P00734DB00006BivalirudinProthrombinsmall moleculeapproved|investigational
TgeneF2P00734DB00100Coagulation Factor IX (Recombinant)Prothrombinbiotechapproved|investigational
TgeneF2P00734DB00278ArgatrobanProthrombinsmall moleculeapproved|investigational
TgeneF2P00734DB01593ZincProthrombinsmall moleculeapproved|investigational
TgeneF2P00734DB04786SuraminProthrombinsmall moleculeapproved|investigational
TgeneF2P00734DB09228Conestat alfaProthrombinbiotechapproved|investigational
TgeneF2P00734DB13151Anti-inhibitor coagulant complexProthrombinbiotechapproved|investigational
TgeneF2P00734DB00055Drotrecogin alfaProthrombinbiotechapproved|investigational|withdrawn
TgeneF2P00734DB04898XimelagatranProthrombinsmall moleculeapproved|investigational|withdrawn
TgeneF2P00734DB00170MenadioneProthrombinsmall moleculeapproved|nutraceutical

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RelatedDiseases for LPP_F2


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneLPPC3495559Juvenile arthritis1CTD_human
TgeneF2C0020640Inherited Factor II deficiency11CTD_human;ORPHANET;UNIPROT
TgeneF2C0040053Thrombosis4CTD_human
TgeneF2C0027051Myocardial Infarction3CTD_human
TgeneF2C0042487Venous Thrombosis3CTD_human
TgeneF2C0007786Brain Ischemia2CTD_human
TgeneF2C0085762Alcohol abuse2PSYGENET
TgeneF2C0002395Alzheimer's Disease1CTD_human
TgeneF2C0003873Rheumatoid Arthritis1CTD_human
TgeneF2C0005779Blood Coagulation Disorders1CTD_human
TgeneF2C0012739Disseminated Intravascular Coagulation1CTD_human
TgeneF2C0015695Fatty Liver1CTD_human
TgeneF2C0019080Hemorrhage1CTD_human
TgeneF2C0020564Hypertrophy1CTD_human
TgeneF2C0023890Liver Cirrhosis1CTD_human
TgeneF2C0027720Nephrosis1CTD_human
TgeneF2C0027746Nerve Degeneration1CTD_human
TgeneF2C0028754Obesity1CTD_human
TgeneF2C0030524Paratuberculosis1CTD_human
TgeneF2C0037198Sinus Thrombosis, Intracranial1CTD_human
TgeneF2C0038454Cerebrovascular accident1CTD_human
TgeneF2C0040038Thromboembolism1CTD_human;HPO
TgeneF2C0085605Liver Failure1CTD_human
TgeneF2C0162819Skin Diseases, Vascular1CTD_human
TgeneF2C0398623Thrombophilia1CTD_human
TgeneF2C0400966Non-alcoholic Fatty Liver Disease1CTD_human
TgeneF2C1412000Mesenteric vascular insufficiency1CTD_human
TgeneF2C1861172Venous Thromboembolism1CTD_human
TgeneF2C2239176Liver carcinoma1CTD_human